mRNA_H-paniculata_contig258.7028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig258.7028.1
Unique NamemRNA_H-paniculata_contig258.7028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 469 bits (1208), Expect = 1.650e-161
Identity = 235/385 (61.04%), Postives = 287/385 (74.55%), Query Frame = 1 
Query:    1 MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPLCPTVHQIRLILRYCILRAKRR--TCAE-----------TSSLQPPLVECCNNIVQED---EGTAKANPGQGAQNLGAALSCGLADSPGRG--------ERLGRAVRHILDFAKRDLHQTIEGPDEDYDAPEFCAEEGESLTRARAVPPNEDHMLCGYRTSQIER 1083
            MRYF+L+KPRGC+TST+DD GRGRPTVY+VA+AAG+P+FGPVGRLD+DTSGVL+FTDD+KLKKAISSP++KGKA VGTVPSMEKVYH L+AGT+ P+DK +  ++EPLH+ RK+DGPGG WTKPAE R+L TK FK G+PVPWRFKPGT ATITW+EVVLREGKNRQIRRLCRRS+FELTRLHR+SVGPI+LGD++EGS RELTR EVEALYKRCLP DPLCPT+  ++ IL+  + +  RR  T AE           +S++  P  +       ED      AKA  G+          C     PGR         E L   ++ ++DFA+RDLH+T  GPD +   P++C  E ESL +ARAVPPNE HM+CGYR+SQIER
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMDVPQKDMPERPTAEDAEQRRAAKARDGERG------CPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIER 379
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.810e-82
Identity = 143/261 (54.79%), Postives = 174/261 (66.67%), Query Frame = 1 
Query:  355 GCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPLCPTVHQIRLILRYCILRAKRR--TCAE-----------TSSLQPPLVECCNNIVQED---EGTAKANPGQ-GAQNLGAALSCGLADSPGRGER-LGRAVRHILDFAKRDLHQTIEGPDEDYDAPEFCAEEGESLTRARAVPPNEDHMLCGYRTSQIER 1083
            G WTKPAE R+L TK FK G+PVPWRFKPGT ATITW+EVVLREGKNRQIRRLCRRS+FELTRLHR+SVGPI+LGD+ EGS RELTR EVEALYKRCLP DPLCPT+  ++ IL+  + +  RR  T AE           +S++  P  +      +ED      AK   G+ G                  GE  L   V+ ++DF++RDLH+T  GPD +   P++C  E ESL +ARAVPPNE HM+CGYR+SQIER
Sbjct:   15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDAPERPTREDAEQRWAAKVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIER 275
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A6H5L0P5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P5_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.820e-52
Identity = 80/102 (78.43%), Postives = 97/102 (95.10%), Query Frame = 1 
Query:    1 MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVH 306
            MRYF+L+KPRGC+TST+DD GRGRPTVY+VA+AAG+P+FGPVGRLD+DTSGVL+FTDD+KLKKAISSP++KGKA VGTVPSMEKVYH L+AGT+ P+DK V+
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAAGVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGVN 102
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A2E7M5B4_9DELT (PseudoU_synth_2 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M5B4_9DELT)

HSP 1 Score: 162 bits (409), Expect = 1.160e-43
Identity = 92/228 (40.35%), Postives = 127/228 (55.70%), Query Frame = 1 
Query:    1 MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPLCPTVHQI 684
            MRYF+LNKP GCIT+  D AGR   TVY+       P    VGRLDY T G+L+FTDD +L +A+ +P FKG+A   TVP + KVY   +   +DPDD  +  + +PL Y        G  T+PA  R +  +                    +W+EV L EG++RQ+R LC RS  ++ +L R+++GP+ LGDL+    R L   EV ALY+  +P DP  P  HQ+
Sbjct:    1 MRYFMLNKPAGCITAKRDFAGRS--TVYDHVPTH-FPELPHVGRLDYATEGLLLFTDDGRLAQALLNPGFKGRASPETVPPLAKVYRVKVRDRLDPDDHRIKLLEQPLRYR------SGVVTRPALSRFVLHR-----------------TRASWLEVTLFEGRHRQVRMLCERSGLQVLKLRRIALGPLELGDLRLRWCRPLHEAEVGALYEAAMPADPR-PPFHQL 201
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 139 bits (350), Expect = 2.750e-35
Identity = 83/217 (38.25%), Postives = 121/217 (55.76%), Query Frame = 1 
Query:   13 LLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYKRCLPLDPL 663
            ++NKP GCIT+  DD   GR TVY    A   P+ G VGRLDY+T G+L+FTDD +L +A+ + +F G         +EKVYH  I G V+  D  + ++ EPL       GPG   T+PA  R+++ +                    +W+E+V+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+L+    R L R EV ALY   L  D L
Sbjct:    1 MMNKPAGCITARTDD--EGRQTVYAHVPAH-FPALGHVGRLDYNTEGLLLFTDDGRLSQALLNKAFSGAP-------VEKVYHVKIKGIVEDGDARLARLEEPL-----KSGPGKT-TEPARARVVERRD-----------------KTSWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL 184
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: UPI0019E4CA9C (rRNA pseudouridine synthase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E4CA9C)

HSP 1 Score: 126 bits (316), Expect = 4.890e-30
Identity = 79/211 (37.44%), Postives = 118/211 (55.92%), Query Frame = 1 
Query:    7 YFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYK 639
            Y+LLNKP+GC+T+  D   RGR TV ++ +      + PVGRLDYDT+GVLI T+D +L  A++ P    K E+      +K YHAL+ G   P ++ + ++RE +      DG     T PA++R+L+ KG K                 +W+E+++ EGKNRQ++R+C     ++ RL R   GP+ + DL  G  R L   E+EAL K
Sbjct:   64 YYLLNKPKGCVTTMKDP--RGRLTVNDLLKDIDERVY-PVGRLDYDTTGVLIITNDGELANALAHP----KKEI------DKYYHALVQGV--PSNEALKRLREGVQL---EDGK----TAPAKIRVLEIKGNK-----------------SWLEIIIHEGKNRQVKRMCEAISHKVLRLKRTRFGPLEVNDLASGKIRALKDGEIEALKK 235
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A7S1FRY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRY8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.490e-29
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:    7 YFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYY 333
            YF L+KPRGC++ST D+ G GR T+Y+     G P  G VGRLD+DTSGV++ T+D KL  A++SP FKG A+  TV  +EKVY   +AG  + + + +  ++EPLHY+
Sbjct:   25 YFALHKPRGCLSSTKDETGLGRLTIYDFVTRCGFPKVGHVGRLDFDTSGVILLTNDVKLSIALTSPRFKGNADPDTVSPLEKVYLVTVAGYFEENSEAIRLLQEPLHYH 133
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: E6SKM7_THEM7 (Pseudouridine synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKM7_THEM7)

HSP 1 Score: 125 bits (314), Expect = 6.140e-29
Identity = 79/210 (37.62%), Postives = 118/210 (56.19%), Query Frame = 1 
Query:    4 RYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEAL 633
            RY +L+KPRG +T+  D   +GRP+V +    AG+    PVGRLD+D+ G+L+ TDD +L  A++ P  +          ++KVYH L+ G ++P  + + ++R+ +      DGP          RIL+ +             PG      W+EVVLREG+ RQ+RR+CR   +++ RL RV+VGP+ LG L  G  R L+R EVEAL
Sbjct:   68 RYVMLHKPRGMVTTLRDP--QGRPSVGDFCRRAGLRGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPLEP--QRLRRLRDGVLL---DDGPARA----RSARILRPR-------------PGGG----WVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLTAGQWRPLSRQEVEAL 239
[Close]
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A2W4K569_9FIRM (Pseudouridine synthase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A2W4K569_9FIRM)

HSP 1 Score: 121 bits (303), Expect = 4.860e-28
Identity = 80/212 (37.74%), Postives = 113/212 (53.30%), Query Frame = 1 
Query:    4 RYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALYK 639
            RY +L+KPRG +T+  D   +GRPTV E+    G+    PVGRLD+D+ G+L+ TDD +L  A++ P  +       VP   KVYH L+ G V  D   + ++RE +   R  DGP       A  R               R +P   AT  W+E+ + EG+ RQ+RR+C    + + RL RV+VGP+ LG+L  G  R L   EVEAL +
Sbjct:   68 RYVMLHKPRGVLTTMYDP--QGRPTVAEICRRQGLEGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHQ-------VP---KVYHVLVRGQVTAD--RLRRLREGV---RLEDGPARA----ATAR---------------RLRPENGAT--WVEITIHEGRKRQVRRMCAAVGWRVLRLVRVAVGPLRLGNLAPGQLRPLRPEEVEALAR 241
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BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Match: A0A3M2HUY3_9GAMM (Pseudouridine synthase n=1 Tax=Lysobacter pythonis TaxID=2483112 RepID=A0A3M2HUY3_9GAMM)

HSP 1 Score: 119 bits (298), Expect = 2.040e-27
Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 1 
Query:    7 YFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTSGVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKEVHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTTATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSSRELTRTEVEALY 636
            + +LNKPRG +T+  D+  RGR TVY   E AG+    PVGRLD  + G+L+F++D +    I+ P      E G     +K YH  +AG   P   E+ +M E +      D  G C      +R+      ++G+               W+E+VL EG+NRQIRRL    DFE+ RL RV+VGP+ LGDL +G  REL   E  +L+
Sbjct:   72 WLMLNKPRGLLTTVCDE--RGRDTVYRCFEGAGLGWIAPVGRLDKASEGLLLFSNDPEWAARITDP------ERGP----DKTYHVQVAGI--PGAAELRRMHEGI------DDAGEC------LRVASASLLRRGD------------RNAWLEIVLDEGRNRQIRRLLTGLDFEVLRLVRVAVGPLRLGDLGKGEWRELAHDEAMSLF 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig258.7028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV84_ECTSI1.650e-16161.04Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3F2_9PHAE1.810e-8254.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0P5_9PHAE1.820e-5278.43PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2E7M5B4_9DELT1.160e-4340.35PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A838IEP5_9DELT2.750e-3538.25Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
UPI0019E4CA9C4.890e-3037.44rRNA pseudouridine synthase n=1 Tax=Proteobacteria... [more]
A0A7S1FRY8_9STRA4.490e-2948.62Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
E6SKM7_THEM76.140e-2937.62Pseudouridine synthase n=1 Tax=Thermaerobacter mar... [more]
A0A2W4K569_9FIRM4.860e-2837.74Pseudouridine synthase n=1 Tax=Firmicutes bacteriu... [more]
A0A3M2HUY3_9GAMM2.040e-2737.14Pseudouridine synthase n=1 Tax=Lysobacter pythonis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig258contigH-paniculata_contig258:24196..28299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score472.2
Seed ortholog evalue2.1e-130
Seed eggNOG ortholog2880.D7FV84
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs2D5AV@1,2SXY6@2759
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_000160.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1329
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig258.7028.1prot_H-paniculata_contig258.7028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig258 24196..28062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.2575388-CDS-H-paniculata_contig258:24195..242981622929766.2575388-CDS-H-paniculata_contig258:24195..24298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 24196..24298 +
1691481001.656538-CDS-H-paniculata_contig258:24195..242981691481001.656538-CDS-H-paniculata_contig258:24195..24298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 24196..24298 +
1622929766.280257-CDS-H-paniculata_contig258:24789..248921622929766.280257-CDS-H-paniculata_contig258:24789..24892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 24790..24892 +
1691481001.6699328-CDS-H-paniculata_contig258:24789..248921691481001.6699328-CDS-H-paniculata_contig258:24789..24892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 24790..24892 +
1622929766.3018768-CDS-H-paniculata_contig258:25832..259261622929766.3018768-CDS-H-paniculata_contig258:25832..25926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 25833..25926 +
1691481001.6801064-CDS-H-paniculata_contig258:25832..259261691481001.6801064-CDS-H-paniculata_contig258:25832..25926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 25833..25926 +
1622929766.3165889-CDS-H-paniculata_contig258:26183..262381622929766.3165889-CDS-H-paniculata_contig258:26183..26238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 26184..26238 +
1691481001.6898518-CDS-H-paniculata_contig258:26183..262381691481001.6898518-CDS-H-paniculata_contig258:26183..26238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 26184..26238 +
1622929766.3270583-CDS-H-paniculata_contig258:26595..267141622929766.3270583-CDS-H-paniculata_contig258:26595..26714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 26596..26714 +
1691481001.7048972-CDS-H-paniculata_contig258:26595..267141691481001.7048972-CDS-H-paniculata_contig258:26595..26714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 26596..26714 +
1622929766.3398986-CDS-H-paniculata_contig258:27244..272971622929766.3398986-CDS-H-paniculata_contig258:27244..27297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 27245..27297 +
1691481001.722161-CDS-H-paniculata_contig258:27244..272971691481001.722161-CDS-H-paniculata_contig258:27244..27297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 27245..27297 +
1622929766.3597834-CDS-H-paniculata_contig258:27497..280621622929766.3597834-CDS-H-paniculata_contig258:27497..28062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 27498..28062 +
1691481001.7342105-CDS-H-paniculata_contig258:27497..280621691481001.7342105-CDS-H-paniculata_contig258:27497..28062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig258 27498..28062 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929766.3763928-UTR-H-paniculata_contig258:28062..282991622929766.3763928-UTR-H-paniculata_contig258:28062..28299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig258 28063..28299 +
1691481001.746809-UTR-H-paniculata_contig258:28062..282991691481001.746809-UTR-H-paniculata_contig258:28062..28299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig258 28063..28299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig258.7028.1

>prot_H-paniculata_contig258.7028.1 ID=prot_H-paniculata_contig258.7028.1|Name=mRNA_H-paniculata_contig258.7028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MRYFLLNKPRGCITSTIDDAGRGRPTVYEVAEAAGIPSFGPVGRLDYDTS
GVLIFTDDFKLKKAISSPSFKGKAEVGTVPSMEKVYHALIAGTVDPDDKE
VHKMREPLHYYRKMDGPGGCWTKPAEVRILKTKGFKKGEPVPWRFKPGTT
ATITWMEVVLREGKNRQIRRLCRRSDFELTRLHRVSVGPILLGDLKEGSS
RELTRTEVEALYKRCLPLDPLCPTVHQIRLILRYCILRAKRRTCAETSSL
QPPLVECCNNIVQEDEGTAKANPGQGAQNLGAALSCGLADSPGRGERLGR
AVRHILDFAKRDLHQTIEGPDEDYDAPEFCAEEGESLTRARAVPPNEDHM
LCGYRTSQIERGE*
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mRNA from alignment at H-paniculata_contig258:24196..28299+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig258.7028.1 ID=mRNA_H-paniculata_contig258.7028.1|Name=mRNA_H-paniculata_contig258.7028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4104bp|location=Sequence derived from alignment at H-paniculata_contig258:24196..28299+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTACTTTTTACTCAACAAGCCAAGAGGGTGCATCACGTCTACTAT
CGATGATGCTGGAAGAGGCAGGCCGACTGTCTATGAAGTTGCCGAGGCTG
CAGGTGACACCTCTCAAACTGGACACATGCAGTACCGTACCGTACCGTAC
CGTACCGTACCGCACCGTACAGTACAGACAATACAGAACGGCTTATGACA
CACGATACTCTGTACCAGGTAAACACATCAATTACCCACACTTCGCTCAA
TACAAGCATGTTCCGAAGCACAGTTGTAGGAGCCCACTCTGATGGTTACT
CTACATTCTGTATTTGTACAACCCACCCATTACAGTGAAATGAATTTTTC
ATGGATGATTTTCACGAGTATTTTGGAATCACGGCCAGCGGATTGGCGGA
TGTGAAAACTGCGCATGAATTGGTCAACGTTCAACATAAGTTAGTACGAG
GGTACAATATTTGAATATTGAACACCCGAACATCCCGGAGACATGTATGC
CGAGTACACCGGATGTCGAAGATCCTTCCCCGATGCCTACCAATCCACCT
CCATGCTCGTGATCGATCGGATAATATGTTCAACATGCGCTCAGGGATCC
CTAGTTTCGGTCCGGTAGGGAGGCTGGATTATGACACCTCTGGAGTGCTG
ATCTTCACAGATGATTTCAAGCTGAAAAAAGCCATCTCATCCCCTAGGTG
AATATTGCTTATATTCCCGTCTTTCGCCTACTCGTCAGTGTTGATTATAT
CAGCTGCTAGTGTACCTGGCGATCTTGTAGCAGTTATCTGCGGTAGGGTG
GAATGTATTTTACTGCCCATCCGGAGGTCGCGAGGTCAGCACTCTCCTGT
ATTTTACGTTGCGTTTGGTTCTCTGGTGCTGTCTACGGCTGGTAATTTCG
TAACTCATGAGAAGACGCTGTTTTGAGAAAGTACGCAGATGCCTTGACAC
GAGACGTGACTCAACAAGTCTATAGTAAATGGGAGGGAGGGAGGGGTGGG
GGGGGTGTTGTGGGATTTCAATGGGCAGCTGCGAACCGAGTATAAGAATG
TTCTGATGAGATTGAGAGTGGAGGGTTTTTGTCGATTTTGATAACAAAGA
TCTGGCGGTCAGAAAACCTATTTGGGGCATTTGCACTTCTTGGGAATATC
CAGTTCACGTCAAAGAAAAAAGAAATAAGTGAGTCCACCGATTCCGGAAA
TATCGCCAAAAATCACTGTTCATTGTACACTGGCATCGATTGAACGGTTT
TCGTTCGTTAGTCAAACCTCGAAGTTCAAACTTGTTCAACTCGGATATCG
GATACATCGTATTGACCGGCAGCTCGGCGCGGTCGTTTTTTTTCAAGGGT
GTGCAGGTCGAATCGTCGATCTTTGCTCTCAAAATTAACAAAAAAAAAAC
ATTCTTAATCTCACAAGTTATTCACTCTCAATCTCACCAAAACACCGTTT
ATGTGTATCCTTTGCGGATGGCCTTCATTGAAATCATTTGTACGTGTCAG
AGCCGCCGCACCAACCATCGACACCTTCATCACGGACGTAAGAATTGGGA
CTGACCACGGCTCGGCCAATCACGTGCTGTAACGACGATTGCGTCTCCGC
GATACGTGTTTGATACCTATTTCGTTTTTGTGGATAGCTTCAAGGGCAAG
GCGGAGGTTGGTACCGTACCTTCCATGGAGAAAGTTTACCATGCTCTCAT
CGCCGGGACGGTCGATCCAGACGACAAAGAGGTAAGATAGACCATCTGAG
TCGGAATTATTGTGAGGAATTTCGGTGTGGCACGCTGTAACACCCCCTGT
ATTGTCGCTCACATTTGCTCTTTGTGTAATGTGCAATTTTGAATGTCACA
GAATCTTGGAATTATCGGAAACGACGAACATAACATCAATATCCAAGTTC
CCCTTGTTGTTGCTTTACTGAGCTGTTTCAACTGTGCGCATGACCAATTG
AGTGTGATCGTTGCCGAAATGTACCATTCGCTATTCAGGTGCATAAAATG
AGAGAGCCTCTGCATTACTACCGAAAAATGGACGGTCCAGGAGGTAAGGA
TTGACCTTGGTTGTGTATGTACATCTATTTGTCGACGGTGCTGTGGGACT
GATTTATGTTGTCCGTGTTTTCATGTCCTCAACCTTCTTTGGAGGTGCCT
ACAATGGTACCATTGTAAAGCAGAGCTGAAAAGTTCAACATTTTGAAGGG
GTGGCGAGCTCCTCTATTTCTTGGGGCGTGTTGAAAGTCCTTCTAAACGT
TGGAAGTTGGTTCCGTGGTAATGAGGTAAAAATGTGGTGCAATCCCTTCA
CCCACTCGTTTCTATTTTGCGTGACCCCGTTGCCACTGCCTGGTCTTTCT
CTCGACATGAAGAGCCTTGCTACGCCTATTGCTCGATTTTCTCCGGCTAG
GGTGTTGGACCAAACCAGCGGAGGTGCGCATACTCAAAACCAAGGGTTTC
AAGAAAGGAGAACCAGTTCCGTGGAGATTTAAGCCAGGGACTACGGCGAC
GATAACGTGGATGGAAGTGGTAAGGAAGATTGGGTGCACGGTGGCCCCCA
TCCGTGAACACCTCTGCCGTTGTTCTGGAGGTTCGCAACAACAGTAGCGA
CGAACGTATACAGAAAGCGCACGTTTTCACTGAGTGCATGTTCTTGGAAG
TAAAGTCCTGCCTTTTCCCGTTTCCAACCGTTACTTCTCGTTTCCTTCAA
TGCCGCGCGCGGAACCGAGCAGCGACGCTCTCTTTGTACTGAAGGACGTT
ATACCAAACTAGTGTTGGCACCCATTTGATTGTTCGATTGGCAGAAAGTA
GATGATATTGCTCACGCTAAACTTCCCTAGAGGCTGCTTGAAGGATATTG
TTAAGAGCTTGAGTTACCGCGCTCATGGCACACAGTGTGTACACGCCGTC
ACACGATAACTAGGTACGCCACTTGTCTTGAACTTGCCATACGTCGGGCT
AGCCCCATGACTGTTGAGTGGAAAACTCAATTGTCAACAAAGAAGCGGTC
ACATTTTCACCAGCTCGTTTTGTCTTCGGTGATCTCCGTAATTGGCTAGG
TGCTACGTGAAGGCAAGAATCGGCAGATCAGGCGTCTCTGTCGCCGAAGC
GAGTGAGTGAACACTAGATCCATTATAGGCTTTTTCATCATGTAGCGTCC
CGTTCTCATTGAGCTTGTGCAATGAAACTATACGGTTTAGGTTATGTACT
GCCACACTTTGGTGGTTTCCTTCTTTGCTAACGCCCCACTCACCACCACT
GGCCTGTCTATTCGAGCTACATATTATAACACATGGCCGCTTGTCTTGAC
AGCTTCGAGCTCACAAGATTACATCGGGTGTCGGTGGGGCCAATCTTGCT
CGGCGACCTGAAGGAAGGGAGCAGTCGCGAGTTAACCCGGACGGAGGTGG
AAGCATTGTACAAGCGATGTCTTCCGCTGGATCCCCTATGCCCCACAGTA
CACCAAATCAGGCTTATCTTGAGGTATTGTATCTTGCGGGCCAAACGTCG
AACATGTGCTGAAACCTCATCGTTACAACCGCCGCTGGTCGAGTGTTGCA
ACAACATTGTACAGGAGGATGAAGGAACGGCGAAGGCAAACCCAGGACAG
GGGGCCCAGAATTTAGGAGCGGCTTTATCCTGTGGATTAGCTGATAGCCC
AGGACGGGGGGAGCGACTAGGGCGTGCGGTGCGCCATATCCTAGACTTCG
CGAAACGTGACTTACATCAAACTATAGAAGGCCCGGACGAAGACTACGAT
GCACCCGAGTTTTGTGCTGAGGAGGGGGAATCCTTGACGCGTGCCCGTGC
TGTTCCACCCAATGAAGATCATATGTTGTGCGGATACCGTACCTCGCAGA
TCGAACGAGGGGAGTGATTGTAATATTATGGAACAATTGTGGCTGTTGTG
GCTGTCAACAGGTTTGTAGTTCATTTTTCTCTTCTGTTCCCAAGGATTAG
AGGTGGCAACGTAGCTGTTTTGGATTTAATACCAGGCAGACGTTTTCCCG
TTTTGAAACACCAAGAATTCGACAAAATGATCGTCGGATATTCAAGTATT
ACACAAGACAGGAATGCGTATAAGAATATTCGTCCACCTTGCACTACGTT
TTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig258:24196..28299+

>mRNA_H-paniculata_contig258.7028.1 ID=mRNA_H-paniculata_contig258.7028.1|Name=mRNA_H-paniculata_contig258.7028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig258:24196..28299+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTACTTTTTACTCAACAAGCCAAGAGGGTGCATCACGTCTACTAT
CGATGATGCTGGAAGAGGCAGGCCGACTGTCTATGAAGTTGCCGAGGCTG
CAGATGCGGTACTTTTTACTCAACAAGCCAAGAGGGTGCATCACGTCTAC
TATCGATGATGCTGGAAGAGGCAGGCCGACTGTCTATGAAGTTGCCGAGG
CTGCAGGGATCCCTAGTTTCGGTCCGGTAGGGAGGCTGGATTATGACACC
TCTGGAGTGCTGATCTTCACAGATGATTTCAAGCTGAAAAAAGCCATCTC
ATCCCCTAGGGATCCCTAGTTTCGGTCCGGTAGGGAGGCTGGATTATGAC
ACCTCTGGAGTGCTGATCTTCACAGATGATTTCAAGCTGAAAAAAGCCAT
CTCATCCCCTAGCTTCAAGGGCAAGGCGGAGGTTGGTACCGTACCTTCCA
TGGAGAAAGTTTACCATGCTCTCATCGCCGGGACGGTCGATCCAGACGAC
AAAGAGCTTCAAGGGCAAGGCGGAGGTTGGTACCGTACCTTCCATGGAGA
AAGTTTACCATGCTCTCATCGCCGGGACGGTCGATCCAGACGACAAAGAG
GTGCATAAAATGAGAGAGCCTCTGCATTACTACCGAAAAATGGACGGTCC
AGGAGGTGCATAAAATGAGAGAGCCTCTGCATTACTACCGAAAAATGGAC
GGTCCAGGAGGGTGTTGGACCAAACCAGCGGAGGTGCGCATACTCAAAAC
CAAGGGTTTCAAGAAAGGAGAACCAGTTCCGTGGAGATTTAAGCCAGGGA
CTACGGCGACGATAACGTGGATGGAAGTGGGTGTTGGACCAAACCAGCGG
AGGTGCGCATACTCAAAACCAAGGGTTTCAAGAAAGGAGAACCAGTTCCG
TGGAGATTTAAGCCAGGGACTACGGCGACGATAACGTGGATGGAAGTGGT
GCTACGTGAAGGCAAGAATCGGCAGATCAGGCGTCTCTGTCGCCGAAGCG
AGTGCTACGTGAAGGCAAGAATCGGCAGATCAGGCGTCTCTGTCGCCGAA
GCGACTTCGAGCTCACAAGATTACATCGGGTGTCGGTGGGGCCAATCTTG
CTCGGCGACCTGAAGGAAGGGAGCAGTCGCGAGTTAACCCGGACGGAGGT
GGAAGCATTGTACAAGCGATGTCTTCCGCTGGATCCCCTATGCCCCACAG
TACACCAAATCAGGCTTATCTTGAGGTATTGTATCTTGCGGGCCAAACGT
CGAACATGTGCTGAAACCTCATCGTTACAACCGCCGCTGGTCGAGTGTTG
CAACAACATTGTACAGGAGGATGAAGGAACGGCGAAGGCAAACCCAGGAC
AGGGGGCCCAGAATTTAGGAGCGGCTTTATCCTGTGGATTAGCTGATAGC
CCAGGACGGGGGGAGCGACTAGGGCGTGCGGTGCGCCATATCCTAGACTT
CGCGAAACGTGACTTACATCAAACTATAGAAGGCCCGGACGAAGACTACG
ATGCACCCGAGTTTTGTGCTGAGGAGGGGGAATCCTTGACGCGTGCCCGT
GCTGTTCCACCCAATGAAGATCATATGTTGTGCGGATACCGTACCTCGCA
GATCGAACGAGGGGAGTGACTTCGAGCTCACAAGATTACATCGGGTGTCG
GTGGGGCCAATCTTGCTCGGCGACCTGAAGGAAGGGAGCAGTCGCGAGTT
AACCCGGACGGAGGTGGAAGCATTGTACAAGCGATGTCTTCCGCTGGATC
CCCTATGCCCCACAGTACACCAAATCAGGCTTATCTTGAGGTATTGTATC
TTGCGGGCCAAACGTCGAACATGTGCTGAAACCTCATCGTTACAACCGCC
GCTGGTCGAGTGTTGCAACAACATTGTACAGGAGGATGAAGGAACGGCGA
AGGCAAACCCAGGACAGGGGGCCCAGAATTTAGGAGCGGCTTTATCCTGT
GGATTAGCTGATAGCCCAGGACGGGGGGAGCGACTAGGGCGTGCGGTGCG
CCATATCCTAGACTTCGCGAAACGTGACTTACATCAAACTATAGAAGGCC
CGGACGAAGACTACGATGCACCCGAGTTTTGTGCTGAGGAGGGGGAATCC
TTGACGCGTGCCCGTGCTGTTCCACCCAATGAAGATCATATGTTGTGCGG
ATACCGTACCTCGCAGATCGAACGAGGGGAGTGA
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