mRNA_H-paniculata_contig25783.7022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25783.7022.1
Unique NamemRNA_H-paniculata_contig25783.7022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: D8LBV6_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV6_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.410e-34
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RIGRQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDDDGPQ 249
            R+ +QVL++KAKGHY VLG++K A +DQIKKAYRK AL+ HPDKN  P+AHEAFQAIGTAFAVLSD +KRAHY+R+GD DGPQ
Sbjct:  126 RMVKQVLNSKAKGHYDVLGIEKGANDDQIKKAYRKLALRLHPDKNGAPQAHEAFQAIGTAFAVLSDADKRAHYDRYGDGDGPQ 208
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A6H5JQ06_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ06_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 3.190e-34
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RIGRQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDDDGPQ 249
            R+ +QVL +K KGHY VLGV+K A +DQIKKAYRK AL+ HPDKN  P+AHEAFQAIGTAFAVLSD +KRAHY+R+GDDDGPQ
Sbjct:  157 RMVKQVLTSKKKGHYDVLGVEKGANDDQIKKAYRKLALRLHPDKNGAPQAHEAFQAIGTAFAVLSDGDKRAHYDRYGDDDGPQ 239
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A8J2SL43_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL43_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.990e-27
Identity = 50/77 (64.94%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   10 RQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDDD 240
            ++V+ AK +GHYAVLG++K+A EDQIK+AYRK ALKFHPDKN  P+A EAF+ IG AFA LSD++KR HY+ +GDD+
Sbjct:   86 KKVIAAKRRGHYAVLGIEKTADEDQIKRAYRKLALKFHPDKNRAPDADEAFKCIGLAFATLSDKDKRRHYDMYGDDE 162
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A7S2XU25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XU25_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.840e-27
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    4 IGRQVLDAKAKGHYAVLGVDK-SATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDDD 240
            + R V+  K +GHYAVLGVDK +AT+D IK+AYRK ALK HPDKN  P A EAF+ +G A+A+LSD EK+AHY+R+GD+D
Sbjct:   25 LARSVVQKKGQGHYAVLGVDKETATDDTIKRAYRKLALKLHPDKNKAPSASEAFKLLGHAYAILSDNEKKAHYDRWGDED 104
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A4D9D2B9_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2B9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.060e-26
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:   10 RQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDDDGPQ 249
            R ++ +K KGHY VL V ++AT+DQIKK+YRK ALKFHPDKN  P+A EAF+AI TAF VLSD +KR  Y++FGDDDG +
Sbjct:  115 RTIIQSKKKGHYEVLSVSRTATDDQIKKSYRKLALKFHPDKNAAPQADEAFKAISTAFQVLSDPDKRRSYDQFGDDDGTE 194
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: F0YIU4_AURAN (J domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIU4_AURAN)

HSP 1 Score: 107 bits (267), Expect = 5.720e-26
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   10 RQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDDD 240
            RQ+L  K +GHY VLGV KSA +D+IKKAYRK ALKFHPDKN  P A EAF+ +G A+AVLSD EKRA Y+R+GD+D
Sbjct:  101 RQILRLKNRGHYEVLGVSKSAGDDEIKKAYRKLALKFHPDKNRAPMADEAFKCVGLAYAVLSDGEKRASYDRYGDED 177
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A7S2DVK4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DVK4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.200e-24
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 RIGRQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDDD 240
            R+ +Q++ A  KGHY VLGV K ATED +KKAY+K ALK HPDKN  PEA  AF+A+  A++VLSD EK+ HY+ +G DD
Sbjct:   95 RMAKQIIAAGKKGHYEVLGVGKDATEDAVKKAYKKLALKLHPDKNSAPEAESAFKAVSMAYSVLSDSEKKRHYDLYGSDD 174
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A1V9YCV1_9STRA (DnaJ subfamily B protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCV1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.670e-23
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 RIGRQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGD 234
            +I RQ+   K   HYAVLGVDKSA E++IKKAYRK ALK HPDKN  P A +AF+A+G AF VLSDE+KR+ Y+R+GD
Sbjct:   94 KIVRQIKACKT--HYAVLGVDKSADENEIKKAYRKLALKLHPDKNSAPGAEDAFKAVGKAFTVLSDEQKRSDYDRYGD 169
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A2P4YST8_9STRA (DnaJ subfamily B protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YST8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.530e-23
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:   34 KGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDD 237
            K HY VL V ++ATE++IKKAYRK ALK HPDKN  P A +AF+A+G AFA+LSD +KRAHY+R+GDD
Sbjct:  112 KNHYEVLAVQQAATENEIKKAYRKLALKLHPDKNSAPGAEDAFKAVGKAFAILSDPDKRAHYDRYGDD 179
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BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Match: A0A0P1AZM3_PLAHL (Molecular chaperone (DnaJ superfamily) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZM3_PLAHL)

HSP 1 Score: 97.8 bits (242), Expect = 1.140e-22
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   10 RQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEAHEAFQAIGTAFAVLSDEEKRAHYNRFGDD 237
            RQ+   K   HY VL V ++ATE +IKKAYRK ALK HPDKN  P A +AF+A+G AFAVLSD +KRAHY+R+GDD
Sbjct:  107 RQIKACKT--HYEVLAVQQNATESEIKKAYRKLALKLHPDKNSAPGAEDAFKAVGKAFAVLSDHDKRAHYDRYGDD 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25783.7022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBV6_ECTSI1.410e-3473.49Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A6H5JQ06_9PHAE3.190e-3474.70HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A8J2SL43_9STRA3.990e-2764.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2XU25_9STRA6.840e-2762.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9D2B9_9STRA1.060e-2663.75J domain-containing protein n=2 Tax=Monodopsidacea... [more]
F0YIU4_AURAN5.720e-2667.53J domain-containing protein n=1 Tax=Aureococcus an... [more]
A0A7S2DVK4_9STRA3.200e-2458.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1V9YCV1_9STRA2.670e-2364.10DnaJ subfamily B protein n=1 Tax=Achlya hypogyna T... [more]
A0A2P4YST8_9STRA4.530e-2366.18DnaJ subfamily B protein n=1 Tax=Phytophthora palm... [more]
A0A0P1AZM3_PLAHL1.140e-2263.16Molecular chaperone (DnaJ superfamily) n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25783contigH-paniculata_contig25783:188..2278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog2880.D8LBV6
KEGG koko:K09518
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.0432894-CDS-H-paniculata_contig25783:187..2701622929765.0432894-CDS-H-paniculata_contig25783:187..270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25783 188..270 -
1691481001.1075585-CDS-H-paniculata_contig25783:187..2701691481001.1075585-CDS-H-paniculata_contig25783:187..270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25783 188..270 -
1622929765.0780127-CDS-H-paniculata_contig25783:2112..22781622929765.0780127-CDS-H-paniculata_contig25783:2112..2278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25783 2113..2278 -
1691481001.1171799-CDS-H-paniculata_contig25783:2112..22781691481001.1171799-CDS-H-paniculata_contig25783:2112..2278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25783 2113..2278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25783.7022.1prot_H-paniculata_contig25783.7022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25783 188..2278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25783.7022.1

>prot_H-paniculata_contig25783.7022.1 ID=prot_H-paniculata_contig25783.7022.1|Name=mRNA_H-paniculata_contig25783.7022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
RIGRQVLDAKAKGHYAVLGVDKSATEDQIKKAYRKRALKFHPDKNPVPEA
HEAFQAIGTAFAVLSDEEKRAHYNRFGDDDGPQ
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mRNA from alignment at H-paniculata_contig25783:188..2278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25783.7022.1 ID=mRNA_H-paniculata_contig25783.7022.1|Name=mRNA_H-paniculata_contig25783.7022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2091bp|location=Sequence derived from alignment at H-paniculata_contig25783:188..2278- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATTGGTCGACAGGTACTGGATGCCAAAGCTAAGGGTCACTACGCCGT
ATTAGGCGTGGATAAATCGGCGACGGAGGACCAAATCAAAAAGGCCTATC
GAAAACGGGCCCTCAAGTTTCACCCAGATAAGAACCCAGTTCCGGAGGCA
CACGAGGCCTTCCAAGGTAAGATGTTGCCCTCTAGTGTTTAGATTGTGAC
ATAGACGTGCCTGAGTTGAGAGAATGAAAGCGCCTCGGAGATCTATCTAG
GTGTCTACGGAGATCCGGATAAGTCGGTCGGGTGATGAAGATTGGTGGAG
ATATAACGTAGGTGACTGTCCCGTATAAGTATAACTTTTTTTTCTCCCTG
GTCTCGCGGGGATCTAAAGGCCTCCTAATGGGACCTGAGATACGTTGACC
TACCTGTCTGGAGGTGGCTGAGGAGTTTTGTAGACGTGTTGGTCATTATT
TACTAATGGTCGTTTTCTAATTCACCTTTTTTGTAGGGATATTCTCTGTA
TCGTGTGGTGAATTTTTCTGAATTCATGAAACCGTGTGCGAAATAGATGA
CCTTGAGCTCTGCTGCTGCAAGGCTGTTGGGTGCTGCCCCCGTTGTCATG
GATAATAATGGCTAAGATGAAAATACACTTCGTCCATGCCTCGAAGCATA
TTTCGCAGAAGGGGCCGATTGCAGTCTGTATGCAGTTGTTGATCTGGAGA
ATGACAAGCTTTGGATAATGTACACCCGCAACGGTAGAGACCAATCTTCG
TTGTGGTGGAGCATCCATGAGATGGAAATGTATATCTTCCACATGCTCCA
TGGTCGATTCATTTTTTACTGGTCTTTCATCGCTAGGTTGGCTATTAAGT
TGCACCTTGACTTGAAATCAGTATCCAACATCCAGTGTCGCCAGTGTACA
TGGAGCACAGTACCCTCAGCACTGTTGAATACGGTGGCGTGACAATACTG
GCGGTACTGTAGGATGTTATCTCTATTGATGTGACAATACTGGCGGTACT
GTAGGATGTTATCTCTATTGATGTGATGATACTGGCGGTACTGTAGGATG
TTATCTCTATTGATGTGACGATACTGGCGGTACTGTAGGATGTTATTTGT
ATTGATGTGACAATACTGGTGACTGAAGAATATCGAGTATTTTCGGCACT
ACATACTGGAGATACTGCAGGAATACTGAGTGTTTCAGGGCTGACAGTAT
CGATGGTATCCAGTATAACGAGTACTTGCTGGTGACGTACGTAGTACCTT
ACTCGATATCTTCGGGTGCGAGTACTAGGGATACTGACTCACAGTAAGTA
TTTTGGGCTAACGATGCTGGCGGTACTGAACAACACCAAGTTTTTTGAGC
TGACGATACCAATGGTGCTGAAGTGATCGGGAGTAGTACAATAATGAGTA
TTGTACCCCTTTTGCAATTGTTGTCTACTTAGACCACTCCTCCGTTTTTG
TTTTTTTTTTCCGTCGCGGATCAGTTAGTGTATCGAAATCTCCAGAATTA
AGTTGGGAAAGTAATACTTTTTGTTGTTGCTGTTCATTATTTCGCGGTGA
GGGCAACAGCAGCTACACTCGTTTGACAATGAGGTTGACGACTGTCATGT
TTGAAAGTGTAGTTGCCCCTGCCCCCCGAGTATGTTTTTGCTACTTTTAC
TGCTGGGATTTCCGGAAACGTTTTTCTTGAAACGCTTGGGTATAGGACCG
TTAATGGATAATGACCAAGTCCCACAGTAATTCGTGGGGGAGTTTGTCTT
GTAACAATTGATAGAAACTATGAATAAACGTTGGCCAAGCCGCACCTTGG
TTTGTTGGAGGTTCGACTCTCTCGACCATGAAAATGGGACCGTAAAATAG
ATGATGACAAAGTTACGCGTTAGAATATGGGTGATAAATGGGATAGTGAC
AAAGTCGCCGGTTAGTTATTTGCCGAGATCAAAGAACACCTTGTCTTCAC
CCTCTGTTTTCTCCTTCGACTGCATCTTGGTAATCTTGTGTTTGTTGGAG
GATGACAGCGATCGGGACAGCGTTTGCCGTATTAAGCGACGAGGAGAAAA
GGGCACATTACAACCGATTCGGGGATGACGACGGGCCGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25783:188..2278-

>mRNA_H-paniculata_contig25783.7022.1 ID=mRNA_H-paniculata_contig25783.7022.1|Name=mRNA_H-paniculata_contig25783.7022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig25783:188..2278- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATTGGTCGACAGGTACTGGATGCCAAAGCTAAGGGTCACTACGCCGT
ATTAGGCGTGGATAAATCGGCGACGGAGGACCAAATCAAAAAGGCCTATC
GAAAACGGGCCCTCAAGTTTCACCCAGATAAGAACCCAGTTCCGGAGGCA
CACGAGGCCTTCCAAGCGGATTGGTCGACAGGTACTGGATGCCAAAGCTA
AGGGTCACTACGCCGTATTAGGCGTGGATAAATCGGCGACGGAGGACCAA
ATCAAAAAGGCCTATCGAAAACGGGCCCTCAAGTTTCACCCAGATAAGAA
CCCAGTTCCGGAGGCACACGAGGCCTTCCAAGCGATCGGGACAGCGTTTG
CCGTATTAAGCGACGAGGAGAAAAGGGCACATTACAACCGATTCGGGGAT
GACGACGGGCCGCAGCGATCGGGACAGCGTTTGCCGTATTAAGCGACGAG
GAGAAAAGGGCACATTACAACCGATTCGGGGATGACGACGGGCCGCAG
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