mRNA_H-paniculata_contig25778.7019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25778.7019.1
Unique NamemRNA_H-paniculata_contig25778.7019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: A0A6H5KGP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP7_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.850e-51
Identity = 91/150 (60.67%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:    1 LPGTPESADLRGPVSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTDKKGNEGLGGAARGAAXXXXXXXXXXXAPA-------------------RKRQKRLVLEALVRDSLGL 393
            LP TP+S+DLRGP SRWHAFIDLC  HHLPVGGRITGYLARPLPL+R GC  +PLV FPV VP+NCPYFPYGEAYIPLITR +        GAA+GAA           A +                   RKRQKR VLEALVR+SLGL
Sbjct:  106 LPDTPDSSDLRGPASRWHAFIDLCAAHHLPVGGRITGYLARPLPLERSGCVLSPLVAFPVDVPKNCPYFPYGEAYIPLITRAET-------GAAKGAAAGGDDDAGTALASSLLVQSVQDRGNGSEGSSQERKRQKREVLEALVRESLGL 248
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: A0A024TBP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBP2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.780e-19
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:   40 VSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTDKK 255
            +SRWH F+DL +  H+ VGGR+TGYLARP+ L R GC+   + PF V VP+NC YFPY  A +PL+T  ++K
Sbjct:  137 LSRWHDFLDLALNWHVHVGGRVTGYLARPIDLRRDGCDVV-MTPFQVDVPDNCTYFPYHAALVPLVTLLERK 207
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: T0QRP7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QRP7_SAPDV)

HSP 1 Score: 85.5 bits (210), Expect = 2.090e-17
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   16 ESADLRGPVSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTDK 252
            E  D    +SRW+ F+DL +  H  + GRITGYLARPL L+RPGC  + L    V VP +C YFPY EA +PLITR ++
Sbjct:  125 ERDDANHTISRWYEFLDLALNWHTKLHGRITGYLARPLSLERPGCTVS-LRAVSVDVPPHCSYFPYQEALVPLITRCEE 202
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: A0A1V9ZAL4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAL4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.470e-17
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   16 ESADLRGPVSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTDKK 255
            E  D    +SRW+ F+D  +  H  + GRITGYLARPL L RPGC  + L P  V VP NC YFPY +A +PL+   ++K
Sbjct:  125 ERDDANYTISRWYDFLDAVLNWHTKLHGRITGYLARPLDLTRPGCSVS-LTPVQVDVPANCTYFPYAQALVPLVVLVERK 203
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: D7G1B4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B4_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.350e-14
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LPGTPESADLRGPVSRWHAFIDLCVGHHLPVGGRITG 111
            LP TP+S+DLRGP SRWHAFIDLC  HHLPVGGRITG
Sbjct:  181 LPDTPDSSDLRGPASRWHAFIDLCAAHHLPVGGRITG 217
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: A0A0P1AAC8_PLAHL (Guanidinoacetate methyltransferase and related proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAC8_PLAHL)

HSP 1 Score: 73.9 bits (180), Expect = 5.890e-13
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   34 GPVSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTD 249
            G  SRWH F+D+ +  H   G RI+GYLAR + L RPGC+   +    V VPENC YFPY EA +P+IT  D
Sbjct:  139 GKRSRWHDFLDVAL-KHCTGGARISGYLAREVALQRPGCQVK-VTRVKVDVPENCSYFPYKEALVPVITVVD 208
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: A0A329T1W0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1W0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.290e-13
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    7 GTPESAD--LRGPVSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTD 249
            G P ++D  L    SRWH F+D+ V  H   G RITGYLAR L L RPGC+ + +    V VPE+C YFP+  A +PLIT  D
Sbjct:  128 GNPLTSDGALGRQRSRWHDFLDIAV-KHCTTGARITGYLARQLDLQRPGCQVS-VSRVQVDVPEHCNYFPHKTALVPLITVVD 208
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BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: A0A6A3L5H5_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L5H5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.570e-11
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:   34 GPVSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTD 249
            G  SRWH F+D+ +  H   G R++GYLAR + L RPGC  A +    V VPENC YFP+  A +P+IT  D
Sbjct:  140 GRRSRWHEFLDVAL-EHCANGARVSGYLAREVDLQRPGCRVA-VTTVQVGVPENCNYFPHKAALVPVITVVD 209
[Close]
BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: A0A3M6VQ81_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQ81_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.940e-11
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   43 SRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTD 249
            SRWH F+D+ + H    G RI+GYLAR L L RPGC+   +    V VPE+C YFP+  A IPLIT T+
Sbjct:  142 SRWHEFLDVVLSH-CATGARISGYLARELDLQRPGCQLF-VSKVQVDVPEHCNYFPHKTALIPLITVTN 208
[Close]
BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Match: W2WDM9_PHYPR (Uncharacterized protein (Fragment) n=9 Tax=Phytophthora TaxID=4783 RepID=W2WDM9_PHYPR)

HSP 1 Score: 68.6 bits (166), Expect = 5.480e-11
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   43 SRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGCEAAPLVPFPVQVPENCPYFPYGEAYIPLITRTD 249
            SRWH F+D+ +  H   G RI+GYLAR L L RPGC+    +   V VPE+C YFP+  A +P+IT  D
Sbjct:  141 SRWHDFLDVAL-KHCTTGARISGYLARKLDLQRPGCQVTISI-VQVDVPEHCNYFPHKTALVPVITVVD 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25778.7019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KGP7_9PHAE2.850e-5160.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024TBP2_9STRA3.780e-1954.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
T0QRP7_SAPDV2.090e-1751.90Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZAL4_9STRA2.470e-1748.75Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
D7G1B4_ECTSI4.350e-1483.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0P1AAC8_PLAHL5.890e-1351.39Guanidinoacetate methyltransferase and related pro... [more]
A0A329T1W0_9STRA6.290e-1349.40Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3L5H5_9STRA1.570e-1148.61Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A3M6VQ81_9STRA2.940e-1152.17Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
W2WDM9_PHYPR5.480e-1149.28Uncharacterized protein (Fragment) n=9 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25778contigH-paniculata_contig25778:301..2293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog157072.XP_008880410.1
KEGG rclassRC00003,RC00614
KEGG koko:K00542
KEGG ReactionR01883
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-arginine N5-methyltransferase activity
EggNOG OGsKOG1709@1,KOG1709@2759
EC2.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.7047-CDS-H-paniculata_contig25778:300..5921622929764.7047-CDS-H-paniculata_contig25778:300..592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25778 301..592 -
1691481001.0030558-CDS-H-paniculata_contig25778:300..5921691481001.0030558-CDS-H-paniculata_contig25778:300..592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25778 301..592 -
1622929764.725128-CDS-H-paniculata_contig25778:2183..22931622929764.725128-CDS-H-paniculata_contig25778:2183..2293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25778 2184..2293 -
1691481001.0155616-CDS-H-paniculata_contig25778:2183..22931691481001.0155616-CDS-H-paniculata_contig25778:2183..2293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25778 2184..2293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25778.7019.1prot_H-paniculata_contig25778.7019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25778 301..2293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25778.7019.1

>prot_H-paniculata_contig25778.7019.1 ID=prot_H-paniculata_contig25778.7019.1|Name=mRNA_H-paniculata_contig25778.7019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
LPGTPESADLRGPVSRWHAFIDLCVGHHLPVGGRITGYLARPLPLDRPGC
EAAPLVPFPVQVPENCPYFPYGEAYIPLITRTDKKGNEGLGGAARGAAPP
REDSSATTTAPARKRQKRLVLEALVRDSLGLGV*
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mRNA from alignment at H-paniculata_contig25778:301..2293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25778.7019.1 ID=mRNA_H-paniculata_contig25778.7019.1|Name=mRNA_H-paniculata_contig25778.7019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1993bp|location=Sequence derived from alignment at H-paniculata_contig25778:301..2293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCCGGTACACCAGAGTCTGCAGACCTCAGAGGTCCGGTGTCGCGATG
GCACGCCTTCATAGACCTTTGCGTCGGCCACCATCTTCCAGTAGGTGGAC
GAATAACTGGGTGAGCATGATGTGGTGACCTCTCTCCAGCAAAGTTACCC
AGTATTTAGTAGCTCGATAGCTCAACATTCATCTGCTTTTCTTGATATCT
GCTTCCTCTGCGATCTTCTATCTCTATCTCTCTCCCTCGCTCTCCACGCC
CACACCCATTTCACACGCCCGCATCATACAAGCATAATCGAAAACTTTAG
CTAGTACAGCAGGCTGAGACCGGGTAGTGTAAGGGCGTTCTTTTTGGCAC
AGGGAAACCTTTCTTTTGCGGATGAAAGCTATTGTCAATAAGGACGAGTA
AAAAGCTATATAATAGACACATAGCGTTAAGAACAGGCGACGATAATAAT
ACAGATGTTTAACGTGATCACGATATTTGGGCACCCACCCTGAGGAGAGA
TTGTCGTGACCCAAACGTTTGAGTGACCCCTTGTTAAACTCATTTTGCTG
ATAGGTGTATGCGCCATAAATGACCACTTAGTGAAGCCAGCTGCCCCCCC
CCCCCCCCCCCCCCCCTGTATTGTGGGATGGCATTTTGACGTTTTTACAC
GTTTGTAACCTCTTCGGACCGTAAGCATTTTTTGCAACGCCCGAGCATCA
CCTGTACGCATCAACCTTTGTTATTTTGAGCCGAGGGCTAAATGCCGATG
AGTCGACCAACCACTTCTCTTTTCAGATGAAACGAACAAACCCACAAAAG
CGCGTCTGTAGCCATTTTTTCAGCACATAAAGCCATTTTGCATTAAAAAA
AGAATGCTCCAAAAGTAGATTCATGAGAACAGATTTTGAGATGTGAGCCC
CCGGGGGGTTAGTTTACTTAGTAGGGAGAGATGAAAATCCATCCACTTTC
ACGATGTTCGGATTCTGGATTGTGTTTGGTGTAATGCGGGGATTCGCCAC
TGATGTGCTTGTAGCTTCCACAACGATAAGAGCCACAGGTAATGACAAGC
GGTGTAACGACATCTGTGTACAGTATGCTCAAGTTTGAACACACCTCGAT
TTATTAACTGCAGTGCACATACCCGTGGCATTCGTTAGCTCTGTACTCCG
ACATTGTGTATGGCATGGTATGTAATAAATACATGGGGACCAAAATAAGG
TACGGTACTGAAAATGCAGCCACTAGGGTACATTATCTATATTTCCGCGG
CACCCAATATAGTACCTGATATATGGGACCAACTACTGTATCATTTTACA
TCGCATTCGCGTGCCGGCAACGTGTAGACTCCATTCTAGCGCTTCGTAAA
AATCAAGAATCAACGACTAGCGACATTCCAAGAATCACACCGGTACAACT
CTAGTGCAGTCAGAGTGTGGGTTTCCTATCTCAAGTACGTCTCAAAGTGC
ACACTCATGCTCTCCTTTATATTATTTTATCCTCAGGAGACCATGGTAAA
ACCTGGACTAATGCTTTCACACCGATGCCCTTGAGTGTACACTGGAGTTA
TTACATGAGCGTCAGAGCTATAACTCAACTTACTGTCGCAGGGGTTGACT
TACATACGAATGAGAATCCCAGCGGGTATGAAGTCGTTGTTGTTGTTGTT
GTTGTTGTTACACCGATGCCGTCCCCCCCATTTCGCACGACTAAACCGCA
GGTACCTCGCAAGGCCGCTACCTCTGGACCGCCCTGGCTGCGAAGCAGCA
CCACTTGTACCTTTCCCGGTCCAAGTGCCGGAGAACTGCCCATACTTCCC
ATACGGAGAGGCATACATTCCTTTGATCACGCGAACAGATAAAAAAGGCA
ACGAAGGTCTTGGGGGGGCAGCACGCGGCGCAGCCCCACCGAGGGAAGAT
TCCAGCGCGACAACGACTGCGCCTGCACGAAAAAGGCAAAAACGTCTGGT
GTTGGAAGCTCTGGTTCGAGATAGTCTAGGCCTCGGGGTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25778:301..2293-

>mRNA_H-paniculata_contig25778.7019.1 ID=mRNA_H-paniculata_contig25778.7019.1|Name=mRNA_H-paniculata_contig25778.7019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig25778:301..2293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCCGGTACACCAGAGTCTGCAGACCTCAGAGGTCCGGTGTCGCGATG
GCACGCCTTCATAGACCTTTGCGTCGGCCACCATCTTCCAGTAGGTGGAC
GAATAACTGGTTGCCCGGTACACCAGAGTCTGCAGACCTCAGAGGTCCGG
TGTCGCGATGGCACGCCTTCATAGACCTTTGCGTCGGCCACCATCTTCCA
GTAGGTGGACGAATAACTGGGTACCTCGCAAGGCCGCTACCTCTGGACCG
CCCTGGCTGCGAAGCAGCACCACTTGTACCTTTCCCGGTCCAAGTGCCGG
AGAACTGCCCATACTTCCCATACGGAGAGGCATACATTCCTTTGATCACG
CGAACAGATAAAAAAGGCAACGAAGGTCTTGGGGGGGCAGCACGCGGCGC
AGCCCCACCGAGGGAAGATTCCAGCGCGACAACGACTGCGCCTGCACGAA
AAAGGCAAAAACGTCTGGTGTTGGAAGCTCTGGTTCGAGATAGTCTAGGC
CTCGGGGTTTAGGTACCTCGCAAGGCCGCTACCTCTGGACCGCCCTGGCT
GCGAAGCAGCACCACTTGTACCTTTCCCGGTCCAAGTGCCGGAGAACTGC
CCATACTTCCCATACGGAGAGGCATACATTCCTTTGATCACGCGAACAGA
TAAAAAAGGCAACGAAGGTCTTGGGGGGGCAGCACGCGGCGCAGCCCCAC
CGAGGGAAGATTCCAGCGCGACAACGACTGCGCCTGCACGAAAAAGGCAA
AAACGTCTGGTGTTGGAAGCTCTGGTTCGAGATAGTCTAGGCCTCGGGGT
TTAG
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