mRNA_H-paniculata_contig25739.7012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25739.7012.1
Unique NamemRNA_H-paniculata_contig25739.7012.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25739.7012.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 2.860e-73
Identity = 110/164 (67.07%), Postives = 132/164 (80.49%), Query Frame = 1 
Query:    1 QIMALNQSCCGPTAPGPNDMVIHYRNYRAELTPEQYNSLHFKDLDYKFYDTVLREAVTSSGGPPDNVWIVGEFNQEDTLVQQLQAEHA-VKIAERVKDQFYAFCFLTRASRLIMAPSTFSWWTAFLGNATEIHYPL--QNRGVTTSLIAVKDEPRYVYRDHAGK 483
            +IMAL+ SCCGPTAPGP D+VIH+RNYRAELT EQY  L FKDLDY+FY+ VLR+A  S+ GPP+ VW+VGEFN E+ L ++LQ +H  VK AE V+DQF+AFCFL+RA RL+MA STFSWW AFLG  TE+H+PL  QN+GVT   IAV DE RYVYRD AG+
Sbjct:   45 KIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAV-DEGRYVYRDEAGR 207
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BLAST of mRNA_H-paniculata_contig25739.7012.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 6.610e-71
Identity = 110/164 (67.07%), Postives = 132/164 (80.49%), Query Frame = 1 
Query:    1 QIMALNQSCCGPTAPGPNDMVIHYRNYRAELTPEQYNSLHFKDLDYKFYDTVLREAVTSSGGPPDNVWIVGEFNQEDTLVQQLQAEHA-VKIAERVKDQFYAFCFLTRASRLIMAPSTFSWWTAFLGNATEIHYPL--QNRGVTTSLIAVKDEPRYVYRDHAGK 483
            +IMAL+ SCCGPTAPGP D+VIH+RNYRAELT EQY  L FKDLDY+FY+ VLR+A  S+ GPP+ VW+VGEFN E+ L ++LQ +H  VK AE V+DQF+AFCFL+RA RL+MA STFSWW AFLG  TE+H+PL  QN+GVT   IAV DE RYVYRD AG+
Sbjct:  212 KIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAV-DEGRYVYRDEAGR 374
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BLAST of mRNA_H-paniculata_contig25739.7012.1 vs. uniprot
Match: A0A349D2R7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peribacteria bacterium TaxID=2053688 RepID=A0A349D2R7_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 6.060e-8
Identity = 48/163 (29.45%), Postives = 74/163 (45.40%), Query Frame = 1 
Query:    1 QIMALNQSCCGPTA-PGPNDMVIHYRN---YRAELTPEQYNSLHFKDLDYKFYDTVLREAVTSSGGPPDNVWIVGEFNQEDTLVQQLQAEHAVKIAERVKDQFYAFCFLTRASRLIMAPSTFSWWTAFLGNATEIHYPLQNRGVTTS----LIAVKDEPRYVY 465
            QI    Q  C   A P P  +V+H R     R E  P          L + FY  VL+ A        D++ I  +  ++    +    +  +K  + ++D    FCFL  A ++ ++ ST+SWW A+L +ATEI++P    G  +S    +    DEPRY Y
Sbjct:   96 QIRTWMQPACSAAAKPDPRALVMHVRRGDYLRVEGYP----------LPFSFYKDVLKRADF------DHLVICTDDPRDPFFRKFRHHDPEIKSGDLLED----FCFLKSAKKIALSQSTYSWWAAYLSDATEIYFPRSLTGPFSSSRPDIDLEVDEPRYRY 238
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BLAST of mRNA_H-paniculata_contig25739.7012.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.250e-6
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  304 FCFLTRASRLIMAPSTFSWWTAFLGNATEIHYPLQNRGVTTSLIAVKDEPRYVYRDHAGK 483
            F +L RA+RL++  ST+SWW A++G ATE+H P    GV T  +   DE RYV+ D A +
Sbjct:  164 FAYLARATRLVVTESTYSWWAAYVGQATEVHAP----GVGTVPVPA-DERRYVFHDIASR 218
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BLAST of mRNA_H-paniculata_contig25739.7012.1 vs. uniprot
Match: F0YD20_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD20_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 5.280e-6
Identity = 44/155 (28.39%), Postives = 69/155 (44.52%), Query Frame = 1 
Query:   43 PGPNDMVIHYRNYRAELTPEQYNSLHFKDLDYKFYDTVLREAVTSSGGPPDNVWIVGEFNQEDT-----LVQQLQAEHA-VKIAERVKDQFYA-----FCFLTRASRLIMAPSTFSWWTAFLGNATEIHYPLQNRGVTTSLIAVK-DEPRYVYRD 471
            P P+D+V+H R   + L        HF    Y  Y+             P  + +V   ++        LV++L AE     IA+    + +      F ++TRA RL++  ST+SWW A+LG A E+H P       + ++ V   EP YV+ D
Sbjct:  280 PRPDDVVVHVRLCDSPL--------HF--YKYYSYENYFEHIFRHLEPAPARIRVVTGCDERKPGVVRELVERLGAERVFTAIADGTSKKPHRSVAADFLYMTRAKRLVVTESTYSWWAAYLGAADEVHAP------ASGVVPVPYQEPHYVFHD 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25739.7012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G107_ECTSI2.860e-7367.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G104_ECTSI6.610e-7167.07Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ect... [more]
A0A349D2R7_9BACT6.060e-829.45Uncharacterized protein n=1 Tax=Candidatus Peribac... [more]
A0A8J2T2Q7_9STRA1.250e-646.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YD20_AURAN5.280e-628.39Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25739contigH-paniculata_contig25739:2173..3433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue2e-56
Seed eggNOG ortholog2880.D7G107
Hectar predicted targeting categoryother localisation
EggNOG OGs2D12B@1,2SGFI@2759
Ec32 ortholog descriptionalpha-1,2-fucosyltransferase, putative
Ec32 orthologEc-22_001510.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size498
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25739.7012.1prot_H-paniculata_contig25739.7012.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25739 2179..3433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.3135953-UTR-H-paniculata_contig25739:2172..21781622929763.3135953-UTR-H-paniculata_contig25739:2172..2178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25739 2173..2178 +
1691481000.5512223-UTR-H-paniculata_contig25739:2172..21781691481000.5512223-UTR-H-paniculata_contig25739:2172..2178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25739 2173..2178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929763.3267007-CDS-H-paniculata_contig25739:2178..22981622929763.3267007-CDS-H-paniculata_contig25739:2178..2298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25739 2179..2298 +
1691481000.56042-CDS-H-paniculata_contig25739:2178..22981691481000.56042-CDS-H-paniculata_contig25739:2178..2298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25739 2179..2298 +
1622929763.728745-CDS-H-paniculata_contig25739:2507..26571622929763.728745-CDS-H-paniculata_contig25739:2507..2657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25739 2508..2657 +
1691481000.5680234-CDS-H-paniculata_contig25739:2507..26571691481000.5680234-CDS-H-paniculata_contig25739:2507..2657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25739 2508..2657 +
1622929763.8804536-CDS-H-paniculata_contig25739:3211..34331622929763.8804536-CDS-H-paniculata_contig25739:3211..3433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25739 3212..3433 +
1691481000.575999-CDS-H-paniculata_contig25739:3211..34331691481000.575999-CDS-H-paniculata_contig25739:3211..3433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25739 3212..3433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25739.7012.1

>prot_H-paniculata_contig25739.7012.1 ID=prot_H-paniculata_contig25739.7012.1|Name=mRNA_H-paniculata_contig25739.7012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MALNQSCCGPTAPGPNDMVIHYRNYRAELTPEQYNSLHFKDLDYKFYDTV
LREAVTSSGGPPDNVWIVGEFNQEDTLVQQLQAEHAVKIAERVKDQFYAF
CFLTRASRLIMAPSTFSWWTAFLGNATEIHYPLQNRGVTTSLIAVKDEPR
YVYRDHAGKELKL*
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mRNA from alignment at H-paniculata_contig25739:2173..3433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25739.7012.1 ID=mRNA_H-paniculata_contig25739.7012.1|Name=mRNA_H-paniculata_contig25739.7012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1261bp|location=Sequence derived from alignment at H-paniculata_contig25739:2173..3433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTATGGCGCTGAACCAGTCGTGCTGCGGCCCGACCGCGCCCGGCCC
CAACGACATGGTCATTCACTATCGCAATTATAGAGCGGAGCTGACGCCTG
AGCAGTACAACTCGCTCCATTTTAAGGTATGTCCCATGTATGAATCATAT
ACATACCGCACACACCACTAGGTACATAAGTGTCTTGTTTCCCACCGTCT
GAGTCGAGACACGCCCATGGCGTGCGTTGCGCTTTGTAGCACGGCCTTTG
TTTACGGACGAAGTGAGCGAGGGAGAAAATCTCACGCGGTGGCGAAATAA
CGAAATGCTTGTTAAATGTTTGTTGCAATCGACAGGACCTTGATTACAAG
TTCTATGACACCGTTCTACGTGAAGCAGTCACTTCCTCTGGTGGACCTCC
CGACAACGTGTGGATAGTGGGAGAATTCAACCAGGAGGACACCCTGGTGC
AGCAGTTACAGGCGGAGCACGCTGTCAAAATAGCTGTGAGTGCCCCTAAT
GGAGAACGGTTGGAAACATGCAGGGGTTGGTGTACTATCAGCGTGTTGGG
GGTAACCTTGATGAGCAGCTTAGGGAAGGGGCTCGATATGTTGGCATGTC
TACTGTATTAGTGAGCAGATATACCCTTTATGGGAAGCTGAGAAAGGGGG
CTTCGCATCTTAGTTCTTCTTTTGTAGTAGCGGCAATTGAATCTGCGGGG
CATATATATTTTTGGATGTACGCCGCGTTTCATGTGCAGGCCTGTGCACC
CGTTGCTGCCTGCACCTGACGCCGTTGAAGCGCCTCACATGTCACGCAGC
CTCATATGCTATTTGTTGGCGCTGCGAATTACCTGATGCCAGCACAAACG
TTCTACACCTTGCCACGCGAGTGCCGACTGCTTGCCCGCTCCTCTCCAAA
TCCAGCGCTGCGATACCGGTAGCACCGATACCTCCCCTCGTCCGAGCTTT
GTGGGCTTCCTTCATGTTTCAAATATACTAAACGTAATCGCCAGTTGCAC
GCTGTTTACTGGACGCGGTTTTATCTTTTTCGTATGCAGGAGAGGGTGAA
AGATCAATTCTACGCCTTTTGCTTCCTGACTCGAGCGTCGCGCCTCATAA
TGGCACCTAGCACGTTCAGCTGGTGGACTGCATTCCTCGGCAACGCGACA
GAGATTCACTACCCTTTGCAAAATAGAGGTGTCACAACGTCGTTGATTGC
GGTGAAGGACGAGCCGCGCTACGTGTATCGGGATCACGCCGGGAAGGAGC
TAAAGCTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25739:2173..3433+

>mRNA_H-paniculata_contig25739.7012.1 ID=mRNA_H-paniculata_contig25739.7012.1|Name=mRNA_H-paniculata_contig25739.7012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig25739:2173..3433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTGAACCAGTCGTGCTGCGGCCCGACCGCGCCCGGCCCCAACGA
CATGGTCATTCACTATCGCAATTATAGAGCGGAGCTGACGCCTGAGCAGT
ACAACTCGCTCCATTTTAAGATGGCGCTGAACCAGTCGTGCTGCGGCCCG
ACCGCGCCCGGCCCCAACGACATGGTCATTCACTATCGCAATTATAGAGC
GGAGCTGACGCCTGAGCAGTACAACTCGCTCCATTTTAAGGACCTTGATT
ACAAGTTCTATGACACCGTTCTACGTGAAGCAGTCACTTCCTCTGGTGGA
CCTCCCGACAACGTGTGGATAGTGGGAGAATTCAACCAGGAGGACACCCT
GGTGCAGCAGTTACAGGCGGAGCACGCTGTCAAAATAGCTGACCTTGATT
ACAAGTTCTATGACACCGTTCTACGTGAAGCAGTCACTTCCTCTGGTGGA
CCTCCCGACAACGTGTGGATAGTGGGAGAATTCAACCAGGAGGACACCCT
GGTGCAGCAGTTACAGGCGGAGCACGCTGTCAAAATAGCTGAGAGGGTGA
AAGATCAATTCTACGCCTTTTGCTTCCTGACTCGAGCGTCGCGCCTCATA
ATGGCACCTAGCACGTTCAGCTGGTGGACTGCATTCCTCGGCAACGCGAC
AGAGATTCACTACCCTTTGCAAAATAGAGGTGTCACAACGTCGTTGATTG
CGGTGAAGGACGAGCCGCGCTACGTGTATCGGGATCACGCCGGGAAGGAG
CTAAAGCTATAGGAGAGGGTGAAAGATCAATTCTACGCCTTTTGCTTCCT
GACTCGAGCGTCGCGCCTCATAATGGCACCTAGCACGTTCAGCTGGTGGA
CTGCATTCCTCGGCAACGCGACAGAGATTCACTACCCTTTGCAAAATAGA
GGTGTCACAACGTCGTTGATTGCGGTGAAGGACGAGCCGCGCTACGTGTA
TCGGGATCACGCCGGGAAGGAGCTAAAGCTATAG
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