prot_H-paniculata_contig2573.7009.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2573.7009.1
Unique Nameprot_H-paniculata_contig2573.7009.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length590
Homology
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 1.320e-103
Identity = 182/272 (66.91%), Postives = 216/272 (79.41%), Query Frame = 0
Query:   12 MEFEGADLGHNSIHGLVRTMSGSLDQLTN-----QQRGGS--------TNGSADEPKRGSVSEEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFLAEQLLRDDWEGVGLGLEGMNGMNLVEAMAEAMDEMR---NNRDE 267
            MEFEG D    +++ LVRT+SG LD L +      QR            + SA++ +  S SE+EPPECRVCRGEPEPGRRL+APCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYDP  P  +P++QVL TCG+KV +KWLP  +R+++V  LWL+FVPVCTSWLYRIWIHRT VLLPQ FL+RL  ACIW+DCISGIIVTAAIILSFLSLMTFADFLA+QLLRDD+ G+GL     +GMNLVEAMAEAMD++R   NN ++
Sbjct:    1 MEFEGED--QRTLNELVRTLSGRLDLLIDGDQPPHQRAXXXXXXXXXXASPSAEDARGPSPSEDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDPGAPTCVPLYQVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDFGGIGL-----DGMNLVEAMAEAMDDLRIDNNNNNQ 265          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 5.590e-103
Identity = 181/271 (66.79%), Postives = 214/271 (78.97%), Query Frame = 0
Query:   12 MEFEGADLGHNSIHGLVRTMSGSLDQLTN-----QQRGGS--------TNGSADEPKRGSVSEEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFLAEQLLRDDWEGVGLGLEGMNGMNLVEAMAEAMDEMR--NNRDE 267
            MEFEG D    +++ LVRT+SG LD L +      QR            + SA++    S SE+EPPECRVCRGEPEPGRRL+APCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYD   P  +P++QVL TCG+KV +KWLP  +R+++V  LWL+FVPVCTSWLYRIWIHRT VLLPQ FL+RL  ACIW+DCISGIIVTAAIILSFLSLMTFADFLA+QLLRDD+ G+GL     +GMNLVEAMAEAMD++R  NN ++
Sbjct:    1 MEFEGED--QRTLNELVRTLSGRLDLLIDGDQPPHQRAXXXXXXXXXXASPSAEDAHGPSPSEDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDAGAPQRVPLYQVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDFGGIGL-----DGMNLVEAMAEAMDDLRIDNNNNQ 264          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 257 bits (656), Expect = 3.050e-70
Identity = 133/230 (57.83%), Postives = 166/230 (72.17%), Query Frame = 0
Query:   12 MEFEGADLGHNSIHGLVRTMSGSLDQL--TNQQRGGSTNGSADEPKRGSVSEEEPP--ECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFLAEQ-LLRDDWE 236
            MEF+G++LG      +VR++SG L +L  T++ R     G A EP      EEEP   ECRVCRGEPE GRRL+APCLCSGSIM+ HEDCL +WL HS KDSCELCG  F FTPVY P+ PA+LP WQV  +C ++    WLP  +R  +   LWLV VP+ TSWLYR+WIHR+ +LLP   ++R+T AC W DC+SG I+ AAIILSFLSLMTFADF+A+Q LLR++W+
Sbjct:    1 MEFDGSNLG------MVRSVSGKLLRLPSTDELRLSRVRG-ASEPDE----EEEPEVLECRVCRGEPELGRRLYAPCLCSGSIMYIHEDCLQQWLAHSKKDSCELCGHTFAFTPVYAPDAPALLPAWQVAASCLRRALTLWLPRALRAALAAALWLVVVPLATSWLYRVWIHRSRMLLPAQLMQRMTLACAWGDCVSGAIIAAAIILSFLSLMTFADFIADQILLREEWD 219          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 214 bits (546), Expect = 6.330e-56
Identity = 99/161 (61.49%), Postives = 127/161 (78.88%), Query Frame = 0
Query:   66 ECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFL 226
            ECRVCRG  E GR+L APCLCSGSIM+ H++CLL+WLKHSGKD CELCG  F+F PVY  + P  LPV +++ TC +++   WLPF++R+++ T+LWL  VP+ TSWLYRIWIHR+     + F++RLT  CIW+D ISG+IV AAI+LSFLSLM+FADFL
Sbjct:   16 ECRVCRGPEEEGRKLFAPCLCSGSIMYCHQECLLQWLKHSGKDRCELCGHQFQFNPVYAEDAPTQLPVHRIVRTCLRRLITDWLPFILRILLATSLWLFVVPLTTSWLYRIWIHRS-----RAFIQRLTMPCIWSDSISGLIVAAAIMLSFLSLMSFADFL 171          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: A0A2P4YC57_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC57_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.790e-51
Identity = 94/173 (54.34%), Postives = 115/173 (66.47%), Query Frame = 0
Query:   54 PKRGSVSEEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFL 226
            P      +E+  ECRVCRGE EP RRL APC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD N P +LP  ++L T  + V LKWLPF +R V+V  LWL   P CTSWLYR+W+ R S ++   F +R  A  I  D  SG+I+   I+ SFL+LM+FADFL
Sbjct:   16 PPFNEFDDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELLTTGLRVVLLKWLPFALRAVLVFVLWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDAPHIVADIFSGVILIVCIVFSFLALMSFADFL 188          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: D0RMI7_PHYIT (RING-CH-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMI7_PHYIT)

HSP 1 Score: 190 bits (482), Expect = 1.160e-50
Identity = 92/166 (55.42%), Postives = 113/166 (68.07%), Query Frame = 0
Query:   61 EEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFL 226
            +E+  ECRVCRGE EP RRL APC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD N P +LP  ++L T  + V LKW PF +R V+V  LWL   P CTSWLYR+W+ R S ++   F +R  A  I  D  SG+I+   I+ SFL+LM+FADFL
Sbjct:   14 DEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHQFTFTPLYDANAPDVLPWTELLGTGLRVVLLKWFPFALRAVLVLVLWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDAPHIVTDIFSGVILIVCIVFSFLALMSFADFL 179          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: I2CQM3_NANGC (E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM3_NANGC)

HSP 1 Score: 183 bits (464), Expect = 1.730e-50
Identity = 96/174 (55.17%), Postives = 114/174 (65.52%), Query Frame = 0
Query:   66 ECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLT---AACIWNDCISGIIVTAAIILSFLSLMTFADFLAEQLLRDDWE 236
            ECRVCR   E    L  PC C+GSI  TH++CLL+WL+HSGKDSCELC   F F PVY  + P  +P  QVL  C +K    +LPFVVRLVIV  LWL  VP  TSW+YRIWIHR S+L+P    +RL    +  +WND +SGII+   II SFLSLM+FADFL     R  WE
Sbjct:   49 ECRVCR---ESNGILFRPCKCAGSIRSTHQECLLQWLQHSGKDSCELCKHKFHFQPVYADDAPTHIPARQVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWIYRIWIHRASLLVPDLIRRRLHGEGSGMLWNDAVSGIIIVGFIIFSFLSLMSFADFL-----RFHWE 214          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: A0A3M6VPX7_9STRA (RING-CH-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPX7_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.890e-49
Identity = 95/168 (56.55%), Postives = 118/168 (70.24%), Query Frame = 0
Query:   59 VSEEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFL 226
            V EE+  ECRVCRGE EP RRL APC CSGSI +TH DCL +WL HSGK  CELCG  F FTP+YD N P  LP  ++L T  + + LKWLPF +R+V+V  LWL   P CTSWLYR+W+ R S ++   FL+R  A+ I  D  SG+++  +II SFL+LM+FADFL
Sbjct:   27 VEEEDEEECRVCRGEAEPDRRLFAPCKCSGSIRYTHSDCLDQWLTHSGKSFCELCGHEFTFTPLYDANAPDTLPWTELLGTGLRVLLLKWLPFALRVVLVLLLWLAVAPWCTSWLYRMWLLRASAMVNVNFLERFDASHIVTDIFSGLVLIVSIIFSFLALMSFADFL 194          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: A0A0W8D8L6_PHYNI (E3 ubiquitin-protein ligase MARCH6 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D8L6_PHYNI)

HSP 1 Score: 191 bits (484), Expect = 2.640e-49
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 0
Query:   59 VSEEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFL 226
            + +E+  ECRVCRGE EP RRL APC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD N P +LP  ++L T  + V LKWLPF +R  +V  LWL   P CTSWLYR+W+ R S ++   F +R  A  I  D  SG+I+   I+ SFL+LM+FADFL
Sbjct:   23 IEDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELLGTGLRVVLLKWLPFALRAALVLVLWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDAPHIVADIFSGVILIVCIVFSFLALMSFADFL 190          
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Match: G4YP00_PHYSP (RING-CH-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4YP00_PHYSP)

HSP 1 Score: 192 bits (487), Expect = 2.810e-48
Identity = 93/166 (56.02%), Postives = 114/166 (68.67%), Query Frame = 0
Query:   61 EEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLPFVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWNDCISGIIVTAAIILSFLSLMTFADFL 226
            +E+  ECRVCRGE EPGRRL APC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD N P +LP  ++L T  + V LKWLPF +R  +V  LWL   P CTSWLYR+W+ R S ++   F +R  A  I  D  SG+I+   I+ SFL+LM+FADFL
Sbjct:   29 DEDEAECRVCRGEAEPGRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELLTTGLRVVLLKWLPFALRAALVLVLWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDAPRIVADIFSGVILIVCIVFSFLALMSFADFL 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2573.7009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE1.320e-10366.91RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI5.590e-10366.79RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A835YNH4_9STRA3.050e-7057.83RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A7S2RW40_9STRA6.330e-5661.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2P4YC57_9STRA2.790e-5154.34E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phy... [more]
D0RMI7_PHYIT1.160e-5055.42RING-CH-type domain-containing protein n=1 Tax=Phy... [more]
I2CQM3_NANGC1.730e-5055.17E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 ... [more]
A0A3M6VPX7_9STRA1.890e-4956.55RING-CH-type domain-containing protein n=2 Tax=Per... [more]
A0A0W8D8L6_PHYNI2.640e-4954.76E3 ubiquitin-protein ligase MARCH6 n=1 Tax=Phytoph... [more]
G4YP00_PHYSP2.810e-4856.02RING-CH-type domain-containing protein n=8 Tax=Phy... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 66..114
e-value: 4.8E-14
score: 62.7
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 67..113
e-value: 6.0E-11
score: 42.3
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 59..120
score: 19.018
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 51..125
e-value: 1.9E-18
score: 67.8
NoneNo IPR availablePANTHERPTHR13145SSM4 PROTEINcoord: 55..369
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 223..590
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 198..222
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 179..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..178
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..150
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 61..118
NoneNo IPR availableTMHMMTMhelixcoord: 195..217
NoneNo IPR availableTMHMMTMhelixcoord: 152..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2573contigH-paniculata_contig2573:775..12221 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2573.7009.1mRNA_H-paniculata_contig2573.7009.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2573 775..12303 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2573.7009.1 ID=prot_H-paniculata_contig2573.7009.1|Name=mRNA_H-paniculata_contig2573.7009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=590bp
MTAAYMLGHTRMEFEGADLGHNSIHGLVRTMSGSLDQLTNQQRGGSTNGS
ADEPKRGSVSEEEPPECRVCRGEPEPGRRLHAPCLCSGSIMHTHEDCLLE
WLKHSGKDSCELCGAVFRFTPVYDPNTPAILPVWQVLWTCGKKVFLKWLP
FVVRLVIVTTLWLVFVPVCTSWLYRIWIHRTSVLLPQPFLKRLTAACIWN
DCISGIIVTAAIILSFLSLMTFADFLAEQLLRDDWEGVGLGLEGMNGMNL
VEAMAEAMDEMRNNRDEPPRFDVVAHHNDDDNNADGVANNGVGGGEEVEA
AAEGGADLLNLAAWGDGAQQPWDENHDAEEKVEVDIYKAAEEPESDSEQG
DRRGTAAEQRAGVGVADIQTAADEHRWGGEEEKMDEGCTAATAAVVSFGT
PMMEEGGNNLNDPMNNEETDSTRNRADSHSDSFLDFQYRPPTPPRGWRGS
ARAGDIVTALDAEDCQSSPVEESKFSGDAAEVAGDAAAAAAAGTPPSSMP
VVPTGATAVAVGGVPRDMHTRGVRVEEEARSELLDPGARAGARQVNVAAG
AAGRAAAEMEAQARQAGNAAVPRQALGAGAPRVGMGDAGR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD