mRNA_H-paniculata_contig2572.7007.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2572.7007.1
Unique NamemRNA_H-paniculata_contig2572.7007.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2572.7007.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.690e-10
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = -2 
Query:  383 SCQAERNFSALALLINNLRKTMLPSKVEKMIFLKLNQNF-PEVQDYSKAVDSRIAKAAKAVKEVAAVLEKAAGHEFTVVI 619
            SCQAERNFSALA LI +LR +MLP KVE+++FL+LN+ + PEV+    AV++  A AA+  ++VA V  +AAG    + +
Sbjct:  428 SCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVVLTL 507
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BLAST of mRNA_H-paniculata_contig2572.7007.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.180e-9
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = -2 
Query:  383 SCQAERNFSALALLINNLRKTMLPSKVEKMIFLKLNQNF-PEVQDYSKAVDSRIAKAAKAVKEVAAVLEKAAGHEFTVVI 619
            SCQAERNFSALA LI +LR +MLP KVE+++FL+LN+ + PEV+    AV++  A AA+  ++VA V  +AAG    + +
Sbjct:  756 SCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVVLTL 835
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BLAST of mRNA_H-paniculata_contig2572.7007.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.000e-6
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -2 
Query:  410 SCQAERNFSALALLINNLRKTMLPSKVEKMIFLKLNQNF-PEVQDYSKAV-DSRIAKAAKAVKEVAAVLEKA 619
            SCQAERNFSALA LI  LR  MLPSKVE+M+F++LN++   EV++   AV  ++ AK   A   +AA  E+A
Sbjct:  572 SCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERA 643
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BLAST of mRNA_H-paniculata_contig2572.7007.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.440e-6
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -2 
Query:  410 SCQAERNFSALALLINNLRKTMLPSKVEKMIFLKLNQNF-PEVQDYSKAV-DSRIAKAAKAVKEVAAVLEKA 619
            SCQAERNFSALA LI  LR  MLPSKVE+M+F++LN++   EV++   AV  ++ AK   A   +AA  E+A
Sbjct:  767 SCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKAAKTKVAQSSMAAQEERA 838
[Close]
BLAST of mRNA_H-paniculata_contig2572.7007.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.630e-5
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = -2 
Query:  389 SCQAERNFSALALLINNLRKTMLPSKVEKMIFLKLNQNF-PEVQDYSKAVDSRIAKAAKAVKEVAAVLEKAAGHEFTV 619
            SCQAERNFSALA LI NLR  MLP +VE+M+ ++LN+    EV+ +  AV      A K   + AA  E+ A     +
Sbjct:  464 SCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLDEVRAFDAAVSRAREMATKNAAKSAAAQEERANKPIDI 541
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2572.7007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE8.690e-1050.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.180e-950.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE4.000e-652.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE4.440e-652.78Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JXV5_9PHAE2.630e-544.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2572contigH-paniculata_contig2572:11366..12535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1160
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2572.7007.1prot_H-paniculata_contig2572.7007.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2572 11523..12135 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.966835-UTR-H-paniculata_contig2572:11365..115221622929762.966835-UTR-H-paniculata_contig2572:11365..11522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 11366..11522 -
1691481000.3902087-UTR-H-paniculata_contig2572:11365..115221691481000.3902087-UTR-H-paniculata_contig2572:11365..11522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 11366..11522 -
1622929763.0083368-UTR-H-paniculata_contig2572:12135..125351622929763.0083368-UTR-H-paniculata_contig2572:12135..12535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 12136..12535 -
1691481000.4180222-UTR-H-paniculata_contig2572:12135..125351691481000.4180222-UTR-H-paniculata_contig2572:12135..12535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2572 12136..12535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.9816449-CDS-H-paniculata_contig2572:11522..116541622929762.9816449-CDS-H-paniculata_contig2572:11522..11654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 11523..11654 -
1691481000.398266-CDS-H-paniculata_contig2572:11522..116541691481000.398266-CDS-H-paniculata_contig2572:11522..11654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 11523..11654 -
1622929762.9979434-CDS-H-paniculata_contig2572:11664..121351622929762.9979434-CDS-H-paniculata_contig2572:11664..12135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 11665..12135 -
1691481000.4103677-CDS-H-paniculata_contig2572:11664..121351691481000.4103677-CDS-H-paniculata_contig2572:11664..12135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2572 11665..12135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2572.7007.1

>prot_H-paniculata_contig2572.7007.1 ID=prot_H-paniculata_contig2572.7007.1|Name=mRNA_H-paniculata_contig2572.7007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MPSCFFQHRGNFLHGLRRLGYPRIDSLAVVLDLREVLVQLQEDHLLDLGG
EHRLAQVVDQQSERRKIALRLAAGINSRMTCQIQAVFVRLLKGRERILTL
IVEPFGKVRVTVLLAGSATARPPAREKAEPAAAAAAAARRPAMVAAELAQ
RPVCEAASQQRLQSRQRSRCHRQLLPRSYYTYAVWRPQLNGCASSVRTSQ
*
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mRNA from alignment at H-paniculata_contig2572:11366..12535-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2572.7007.1 ID=mRNA_H-paniculata_contig2572.7007.1|Name=mRNA_H-paniculata_contig2572.7007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig2572:11366..12535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATCTGTGACGCACAATCGCAAGAAAGGAAAAGATGAACAATAAAAATA
AAATCAAAGCGAAGTTGCTATCAAGTACTGAAAAACCTTGTCCTGAAAGG
CCTTCCTTGTCCAGAGTAAAGTACAAAACAGTGGACAATACGCCGAAGTA
CTTTTACGAGAAAACCCGGTACGAAAAAACTAGTTGAAAGCATAGCAAAT
TTTGCAAAAATAGAACCTCTCACCGATGATACCTTCAATCGATATAAGAT
AAAAAATAAATAAAAAAATACAACTCGCATCCACGAAAACAATCAAAACC
AAAAACCAGTAGGATAGATATTGAACAAATGAGCGCCTCACACTTTACCA
TAGTTACCCACTAACTTTGGTCTATCGCACTAAATCACAACTGTAAATTC
ATGCCCAGCTGCTTTTTCCAGCACCGCGGCAACTTCCTTCACGGCCTTCG
CCGCCTTGGCTATCCGCGAATCGACAGCCTTGCTGTAGTCCTGGACCTCC
GGGAAGTTTTGGTTCAACTTCAGGAAGATCATCTTCTCGACCTTGGAGGG
GAGCATCGTCTTGCGCAGGTTGTTGATCAACAGAGCGAGCGCAGAAAAAT
TGCGCTCCGCCTGGCAGCTGGCATAAACTCACGCATGACATGCCAAATCC
AAGCTGTCTTTGTACGTTTACTCAAAGGACGGGAAAGAATCTTGACCTTG
ATCGTTGAGCCATTCGGGAAAGTGAGAGTCACTGTTTTGCTAGCAGGGTC
TGCGACAGCACGGCCACCAGCTCGCGAGAAAGCAGAGCCTGCAGCAGCAG
CAGCAGCAGCAGCTCGCAGGCCAGCAATGGTGGCTGCAGAGCTTGCACAG
CGACCAGTTTGCGAGGCAGCAGTGACTGCAGAGCCAGCAGCGTTTGCAGA
GCCGGCAGCGGTCGCGTTGCCATCGCCAGCTGCTGCCGCGCTCATACTAC
ACGTATGCTGTCTGGCGACCACAACTAAACGGCTGTGCATCAAGTGTGCG
CACTAGTCAATGAAGCATGATACGAAGACCTTGCGATACACTAATACACC
AACCAGCAGACCCGCGGTCGTGGGGACCTGTTCACGGTACTATATTGGTA
CGGTAACGAGGTTTCACGATACGGTAATAGTACGGTAACGGGGTTCCCGA
TACGGTCACGGTACGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2572:11366..12535-

>mRNA_H-paniculata_contig2572.7007.1 ID=mRNA_H-paniculata_contig2572.7007.1|Name=mRNA_H-paniculata_contig2572.7007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig2572:11366..12535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCAGCTGCTTTTTCCAGCACCGCGGCAACTTCCTTCACGGCCTTCG
CCGCCTTGGCTATCCGCGAATCGACAGCCTTGCTGTAGTCCTGGACCTCC
GGGAAGTTTTGGTTCAACTTCAGGAAGATCATCTTCTCGACCTTGGAGGG
GAGCATCGTCTTGCGCAGGTTGTTGATCAACAGAGCGAGCGCAGAAAAAT
TGCGCTCCGCCTGGCAGCTGGCATAAACTCACGCATGACATGCCAAATCC
AAGCTGTCTTTGTACGTTTACTCAAAGGACGGGAAAGAATCTTGACCTTG
ATCGTTGAGCCATTCGGGAAAGTGAGAGTCACTGTTTTGCTAGCAGGGTC
TGCGACAGCACGGCCACCAGCTCGCGAGAAAGCAGAGCCTGCAGCAGCAG
CAGCAGCAGCAGCTCGCAGGCCAGCAATGGTGGCTGCAGAGCTTGCACAG
CGACCAGTTTGCGAGGCAGCAATGCCCAGCTGCTTTTTCCAGCACCGCGG
CAACTTCCTTCACGGCCTTCGCCGCCTTGGCTATCCGCGAATCGACAGCC
TTGCTGTAGTCCTGGACCTCCGGGAAGTTTTGGTTCAACTTCAGGAAGAT
CATCTTCTCGACCTTGGAGGGGAGCATCGTCTTGCGCAGGTTGTTGATCA
ACAGAGCGAGCGCAGAAAAATTGCGCTCCGCCTGGCAGCTGGCATAAACT
CACGCATGACATGCCAAATCCAAGCTGTCTTTGTACGTTTACTCAAAGGA
CGGGAAAGAATCTTGACCTTGATCGTTGAGCCATTCGGGAAAGTGAGAGT
CACTGTTTTGCTAGCAGGGTCTGCGACAGCACGGCCACCAGCTCGCGAGA
AAGCAGAGCCTGCAGCAGCAGCAGCAGCAGCAGCTCGCAGGCCAGCAATG
GTGGCTGCAGAGCTTGCACAGCGACCAGTTTGCGAGGCAGCAAGCCAGCA
GCGTTTGCAGAGCCGGCAGCGGTCGCGTTGCCATCGCCAGCTGCTGCCGC
GCTCATACTACACGTATGCTGTCTGGCGACCACAACTAAACGGCTGTGCA
TCAAGTGTGCGCACTAGTCAATGAAGCCAGCAGCGTTTGCAGAGCCGGCA
GCGGTCGCGTTGCCATCGCCAGCTGCTGCCGCGCTCATACTACACGTATG
CTGTCTGGCGACCACAACTAAACGGCTGTGCATCAAGTGTGCGCACTAGT
CAATGA
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