mRNA_H-paniculata_contig25719.7006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25719.7006.1
Unique NamemRNA_H-paniculata_contig25719.7006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: A0A6H5KIW5_9PHAE (Aqp protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIW5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.190e-13
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    7 ITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            + + V A DAFG EVLCTFLLV TVFAA DG LG+K  H   LLP  IGMAVLL
Sbjct:  154 LADNVSATDAFGAEVLCTFLLVVTVFAACDGELGRKTAHTGPLLPLVIGMAVLL 207
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: D8LTV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.160e-12
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 AVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            A QA +AFG EVLCTFLLV TVF A DG LG+K+ H   LLP  IGMAVL+
Sbjct:  152 AAQAGEAFGAEVLCTFLLVVTVFTACDGELGRKNAHTGPLLPLVIGMAVLI 202
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: A0A6H5JZJ3_9PHAE (Aqp protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.130e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    7 ITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            I + V A +AFG EVLCTFLLV TVF A DG LG+K+ H   LLP  IGMAVL+
Sbjct:  389 IADGVSAIEAFGAEVLCTFLLVVTVFTACDGELGRKNAHTGPLLPLVIGMAVLI 442
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: A0A835YY46_9STRA (Aquaporin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY46_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.470e-7
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 HMITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            +++ N V A  A GGE+LCT+LLVT V  AT+  L + + H   LLP+ IGM V+L
Sbjct:  149 NVVNNQVGAHQALGGEILCTWLLVTVVLCATNPGLQKAYVHQAVLLPWVIGMTVML 204
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: A0A1Y1I4M6_KLENI (Aquaporin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4M6_KLENI)

HSP 1 Score: 53.5 bits (127), Expect = 4.640e-7
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   31 DAFGGEVLCTFLLVTTVFAATDGVLGQKHG--HIHALLPFAIGMAVLL 168
            DA G E++ TF+L+TTVFAATD V   + G  HI AL PFAIG+AV +
Sbjct:   94 DALGVEIIGTFVLITTVFAATDPVRSCREGSPHISALAPFAIGVAVFI 141
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: UPI0016531371 (probable aquaporin PIP1-4 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531371)

HSP 1 Score: 50.8 bits (120), Expect = 6.580e-6
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:    1 HMITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            +++++     D FG E++ TF+LV TVF+ATD  L  +  H+  L P  IG AV L
Sbjct:  168 NVVSDGYSKVDGFGAEIIGTFVLVYTVFSATDAKLSARDSHVPILAPLPIGFAVFL 223
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: UPI0010A40AF8 (aquaporin PIP1-3 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A40AF8)

HSP 1 Score: 48.5 bits (114), Expect = 4.400e-5
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:    1 HMITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            +M+ +     DA G E++ TF+LV TVF+ATD     +  H+  L P  IG AV L
Sbjct:  165 NMVNHGYTKGDALGAEIVGTFILVYTVFSATDAKRNARDSHVPLLAPLPIGFAVFL 220
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: UPI000A29B3A4 (probable aquaporin PIP1-5 n=3 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29B3A4)

HSP 1 Score: 47.8 bits (112), Expect = 4.460e-5
Identity = 21/56 (37.50%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:    1 HMITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            +++ +        G E++ TF+LV TVF+ATD     +  H+H L+P  IG AV L
Sbjct:   76 NVVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVHILVPLPIGFAVFL 131
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: O23770_CRAPL (Major intrinsic protein PIPa2 n=2 Tax=asterids TaxID=71274 RepID=O23770_CRAPL)

HSP 1 Score: 48.1 bits (113), Expect = 6.050e-5
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 1 
Query:    1 HMITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            +++ N     D  G E+L TF+LV TVF+ATD     +  H+  L P  IG AV L
Sbjct:  168 NVVANGYTKGDGLGAEILGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFL 223
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BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Match: A0A6P8DZT0_PUNGR (aquaporin PIP1-1-like n=2 Tax=Punica granatum TaxID=22663 RepID=A0A6P8DZT0_PUNGR)

HSP 1 Score: 48.1 bits (113), Expect = 6.070e-5
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:    1 HMITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIGMAVLL 168
            +++ N     D+ G E+L TF+LV TVF+ATD     +  H+  L P  IG AV L
Sbjct:  169 NVVANGYTRVDSLGAEILGTFILVYTVFSATDAKRHARDSHVPILAPLPIGFAVFL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25719.7006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KIW5_9PHAE2.190e-1366.67Aqp protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D8LTV4_ECTSI1.160e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZJ3_9PHAE2.130e-1262.96Aqp protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YY46_9STRA1.470e-748.21Aquaporin n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A1Y1I4M6_KLENI4.640e-758.33Aquaporin n=1 Tax=Klebsormidium nitens TaxID=10523... [more]
UPI00165313716.580e-641.07probable aquaporin PIP1-4 n=1 Tax=Helianthus annuu... [more]
UPI0010A40AF84.400e-541.07aquaporin PIP1-3 n=1 Tax=Prosopis alba TaxID=20771... [more]
UPI000A29B3A44.460e-537.50probable aquaporin PIP1-5 n=3 Tax=Arabidopsis lyra... [more]
O23770_CRAPL6.050e-541.07Major intrinsic protein PIPa2 n=2 Tax=asterids Tax... [more]
A0A6P8DZT0_PUNGR6.070e-541.07aquaporin PIP1-1-like n=2 Tax=Punica granatum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25719contigH-paniculata_contig25719:200..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog2880.D8LTV5
Preferred nameMIP
KEGG koko:K09863,ko:K09864,ko:K09865,ko:K09866,ko:K09867,ko:K09868,ko:K09872
KEGG TC1.A.8,1.A.8.11,1.A.8.8
KEGG Pathwayko04924,ko04962,ko04964,ko04970,ko04976,map04924,map04962,map04964,map04970,map04976
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000302,GO:0000323,GO:0001101,GO:0001568,GO:0001654,GO:0001655,GO:0001656,GO:0001666,GO:0001822,GO:0001944,GO:0002088,GO:0002237,GO:0002790,GO:0003008,GO:0003014,GO:0003091,GO:0003094,GO:0003097,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003779,GO:0005102,GO:0005198,GO:0005212,GO:0005215,GO:0005216,GO:0005217,GO:0005221,GO:0005223,GO:0005253,GO:0005261,GO:0005267,GO:0005326,GO:0005372,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005783,GO:0005791,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005887,GO:0005901,GO:0005902,GO:0005903,GO:0005911,GO:0006139,GO:0006163,GO:0006164,GO:0006182,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006820,GO:0006833,GO:0006836,GO:0006855,GO:0006869,GO:0006884,GO:0006915,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007267,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007565,GO:0007568,GO:0007586,GO:0007588,GO:0007589,GO:0007600,GO:0007601,GO:0008092,GO:0008150,GO:0008152,GO:0008154,GO:0008219,GO:0008284,GO:0008324,GO:0008361,GO:0008509,GO:0008519,GO:0008643,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009314,GO:0009410,GO:0009411,GO:0009414,GO:0009415,GO:0009416,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009611,GO:0009612,GO:0009617,GO:0009624,GO:0009628,GO:0009636,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009887,GO:0009888,GO:0009892,GO:0009914,GO:0009925,GO:0009941,GO:0009987,GO:0009991,GO:0010008,GO:0010015,GO:0010033,GO:0010035,GO:0010038,GO:0010053,GO:0010054,GO:0010226,GO:0010243,GO:0010256,GO:0010466,GO:0010496,GO:0010591,GO:0010592,GO:0010605,GO:0010632,GO:0010634,GO:0010817,GO:0010876,GO:0010941,GO:0010951,GO:0010959,GO:0012501,GO:0012505,GO:0012506,GO:0014070,GO:0014074,GO:0015075,GO:0015077,GO:0015079,GO:0015103,GO:0015112,GO:0015144,GO:0015166,GO:0015168,GO:0015238,GO:0015250,GO:0015267,GO:0015276,GO:0015318,GO:0015669,GO:0015670,GO:0015672,GO:0015696,GO:0015698,GO:0015701,GO:0015706,GO:0015711,GO:0015718,GO:0015721,GO:0015722,GO:0015791,GO:0015793,GO:0015833,GO:0015849,GO:0015850,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016323,GO:0016324,GO:0018130,GO:0018995,GO:0019222,GO:0019233,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019755,GO:0019899,GO:0019904,GO:0020003,GO:0021537,GO:0021591,GO:0021670,GO:0021700,GO:0022411,GO:0022414,GO:0022600,GO:0022603,GO:0022607,GO:0022622,GO:0022803,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030042,GO:0030054,GO:0030072,GO:0030104,GO:0030133,GO:0030135,GO:0030136,GO:0030141,GO:0030154,GO:0030155,GO:0030157,GO:0030162,GO:0030165,GO:0030184,GO:0030185,GO:0030334,GO:0030335,GO:0030424,GO:0030430,GO:0030658,GO:0030659,GO:0030667,GO:0030900,GO:0030950,GO:0030952,GO:0031045,GO:0031090,GO:0031224,GO:0031225,GO:0031226,GO:0031253,GO:0031300,GO:0031301,GO:0031302,GO:0031303,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031410,GO:0031526,GO:0031625,GO:0031667,GO:0031668,GO:0031960,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032127,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032526,GO:0032535,GO:0032809,GO:0032835,GO:0032870,GO:0032879,GO:0032940,GO:0032941,GO:0032984,GO:0032991,GO:0033036,GO:0033267,GO:0033326,GO:0033363,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0033762,GO:0033993,GO:0034219,GO:0034220,GO:0034599,GO:0034614,GO:0034641,GO:0034644,GO:0034654,GO:0035295,GO:0035377,GO:0035378,GO:0035379,GO:0035690,GO:0035821,GO:0036293,GO:0036294,GO:0036477,GO:0040007,GO:0040012,GO:0040017,GO:0042044,GO:0042045,GO:0042060,GO:0042127,GO:0042221,GO:0042383,GO:0042476,GO:0042493,GO:0042538,GO:0042542,GO:0042592,GO:0042594,GO:0042631,GO:0042802,GO:0042886,GO:0042891,GO:0042981,GO:0042995,GO:0043005,GO:0043010,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043269,GO:0043270,GO:0043281,GO:0043434,GO:0043624,GO:0043627,GO:0043656,GO:0043657,GO:0043679,GO:0043855,GO:0043933,GO:0044057,GO:0044058,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044241,GO:0044249,GO:0044271,GO:0044281,GO:0044297,GO:0044298,GO:0044306,GO:0044389,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044434,GO:0044435,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044706,GO:0044853,GO:0045121,GO:0045177,GO:0045178,GO:0045202,GO:0045765,GO:0045766,GO:0045785,GO:0045861,GO:0046068,GO:0046390,GO:0046483,GO:0046541,GO:0046658,GO:0046677,GO:0046683,GO:0046688,GO:0046689,GO:0046691,GO:0046717,GO:0046873,GO:0046875,GO:0046877,GO:0046878,GO:0046879,GO:0046903,GO:0046942,GO:0048145,GO:0048146,GO:0048364,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048588,GO:0048589,GO:0048592,GO:0048593,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050878,GO:0050886,GO:0050891,GO:0050896,GO:0050953,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051181,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051261,GO:0051262,GO:0051270,GO:0051272,GO:0051289,GO:0051290,GO:0051291,GO:0051336,GO:0051346,GO:0051384,GO:0051458,GO:0051591,GO:0051592,GO:0051702,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0051851,GO:0051924,GO:0051928,GO:0052547,GO:0052548,GO:0052652,GO:0055037,GO:0055038,GO:0055044,GO:0055085,GO:0055086,GO:0060255,GO:0060322,GO:0060429,GO:0060456,GO:0060491,GO:0060548,GO:0060560,GO:0060986,GO:0061326,GO:0061437,GO:0061440,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0065010,GO:0070062,GO:0070293,GO:0070295,GO:0070301,GO:0070382,GO:0070482,GO:0070633,GO:0070887,GO:0071214,GO:0071229,GO:0071236,GO:0071241,GO:0071248,GO:0071260,GO:0071280,GO:0071288,GO:0071300,GO:0071310,GO:0071320,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071453,GO:0071456,GO:0071462,GO:0071466,GO:0071470,GO:0071472,GO:0071474,GO:0071478,GO:0071482,GO:0071495,GO:0071496,GO:0071548,GO:0071549,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071731,GO:0071732,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072009,GO:0072012,GO:0072014,GO:0072019,GO:0072020,GO:0072022,GO:0072032,GO:0072044,GO:0072070,GO:0072073,GO:0072080,GO:0072170,GO:0072205,GO:0072207,GO:0072210,GO:0072220,GO:0072224,GO:0072229,GO:0072230,GO:0072232,GO:0072234,GO:0072236,GO:0072237,GO:0072239,GO:0072243,GO:0072358,GO:0072359,GO:0072488,GO:0072521,GO:0072522,GO:0080090,GO:0080147,GO:0080170,GO:0085018,GO:0090066,GO:0090407,GO:0090558,GO:0090596,GO:0090627,GO:0097159,GO:0097205,GO:0097237,GO:0097305,GO:0097327,GO:0097366,GO:0097435,GO:0097458,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098791,GO:0098793,GO:0098805,GO:0098857,GO:0098858,GO:0098862,GO:0099094,GO:0099402,GO:0099503,GO:0104004,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0150034,GO:1901135,GO:1901137,GO:1901293,GO:1901342,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901618,GO:1901652,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1902743,GO:1902745,GO:1903561,GO:1904018,GO:1905392,GO:1990349,GO:2000026,GO:2000116,GO:2000117,GO:2000145,GO:2000147
EggNOG free text desc.water channel activity
EggNOG OGsCOG0580@1,KOG0223@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04147
Exons1
Model size168
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.90099-CDS-H-paniculata_contig25719:199..3641622929762.90099-CDS-H-paniculata_contig25719:199..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25719 200..364 -
1691481000.3720117-CDS-H-paniculata_contig25719:199..3641691481000.3720117-CDS-H-paniculata_contig25719:199..364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25719 200..364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929762.9170434-UTR-H-paniculata_contig25719:364..3671622929762.9170434-UTR-H-paniculata_contig25719:364..367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25719 365..367 -
1691481000.3820808-UTR-H-paniculata_contig25719:364..3671691481000.3820808-UTR-H-paniculata_contig25719:364..367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25719 365..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25719.7006.1prot_H-paniculata_contig25719.7006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25719 200..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25719.7006.1

>prot_H-paniculata_contig25719.7006.1 ID=prot_H-paniculata_contig25719.7006.1|Name=mRNA_H-paniculata_contig25719.7006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MITNAVQAEDAFGGEVLCTFLLVTTVFAATDGVLGQKHGHIHALLPFAIG
MAVLL
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mRNA from alignment at H-paniculata_contig25719:200..367-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25719.7006.1 ID=mRNA_H-paniculata_contig25719.7006.1|Name=mRNA_H-paniculata_contig25719.7006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig25719:200..367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATGATAACAAACGCTGTTCAGGCAGAGGATGCATTCGGCGGCGAGGT
GCTGTGCACGTTCCTCCTCGTCACGACCGTTTTCGCGGCGACGGATGGAG
TGCTGGGCCAGAAGCACGGCCACATTCACGCCCTCCTACCCTTCGCTATC
GGCATGGCTGTCTTGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig25719:200..367-

>mRNA_H-paniculata_contig25719.7006.1 ID=mRNA_H-paniculata_contig25719.7006.1|Name=mRNA_H-paniculata_contig25719.7006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig25719:200..367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAACAAACGCTGTTCAGGCAGAGGATGCATTCGGCGGCGAGGTGCT
GTGCACGTTCCTCCTCGTCACGACCGTTTTCGCGGCGACGGATGGAGTGC
TGGGCCAGAAGCACGGCCACATTCACGCCCTCCTACCCTTCGCTATCGGC
ATGGCTGTCTTGCTCATGATAACAAACGCTGTTCAGGCAGAGGATGCATT
CGGCGGCGAGGTGCTGTGCACGTTCCTCCTCGTCACGACCGTTTTCGCGG
CGACGGATGGAGTGCTGGGCCAGAAGCACGGCCACATTCACGCCCTCCTA
CCCTTCGCTATCGGCATGGCTGTCTTGCTC
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