mRNA_H-paniculata_contig25710.7004.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: A0A6H5L457_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L457_9PHAE) HSP 1 Score: 120 bits (301), Expect = 7.670e-30 Identity = 55/68 (80.88%), Postives = 64/68 (94.12%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKAREGAS 205
QRKDSLAMYNNLVF+CF EC++SFRSK+LDDGE KCINVCAEK+IKLTSRV LRFQD+QQQKA++ A+
Sbjct: 17 QRKDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKYIKLTSRVALRFQDIQQQKAKDEAA 84
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: A0A024TE29_9STRA (zf-Tim10_DDP domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TE29_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 7.270e-15 Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQ 181
Q ++SL +YN +V CF EC +SFRSKKL+D E C+N+CAEKF+K T RVG+RF + QQ
Sbjct: 23 QLEESLMLYNRVVATCFNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAEAQQ 82
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: B7G5E1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E1_PHATC) HSP 1 Score: 79.3 bits (194), Expect = 1.110e-14 Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRF---QDLQQQKAREG 199
Q KDSL+MYNNLV +CF C SFRSK LD E CI CA++++K+T RVGLRF Q +QQ+K G
Sbjct: 23 QLKDSLSMYNNLVGRCFDGCVTSFRSKTLDKSEISCIEHCADRYVKMTQRVGLRFAEHQAMQQKKMELG 91
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: A0A7S3BME1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BME1_9EUKA) HSP 1 Score: 76.6 bits (187), Expect = 1.650e-13 Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKAREG 199
Q KD+L M+N LV +CF EC FRSK L E KCIN CAEKFIK + RVG RF +L Q+ G
Sbjct: 43 QMKDTLRMFNGLVERCFSECVNGFRSKALTAPEEKCINTCAEKFIKHSGRVGQRFGELTAQEQTRG 108
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: A0A1Y1IU56_KLENI (Mitochondrial import inner membrane translocon protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IU56_KLENI) HSP 1 Score: 75.1 bits (183), Expect = 3.410e-13 Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKA 190
Q +DSL MYNNLV KCF C +FR K LD E KCI CAEKF+K T+RV +RF +L A
Sbjct: 25 QMRDSLRMYNNLVEKCFSNCVDTFRRKTLDKDEDKCIRRCAEKFLKHTARVSMRFAELNSGAA 87
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: A0A2U1KNN5_ARTAN (Import inner membrane translocase subunit Tim9 n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KNN5_ARTAN) HSP 1 Score: 75.1 bits (183), Expect = 3.690e-13 Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKARE 196
Q +DSL MYNNLV +CF +C SFR K LD E C+ CAEKF+K + RVGLRF +L Q A +
Sbjct: 28 QVRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEESCVKRCAEKFLKHSMRVGLRFAELNQGAATQ 92
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: F0Y4A4_AURAN (zf-Tim10_DDP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4A4_AURAN) HSP 1 Score: 75.1 bits (183), Expect = 3.800e-13 Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTR----SFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKAREGASAAP 214
Q KDSL MYNNLV +CF C SFRSK LD E +CI CAEK+IKLT RVG RF + Q A +GA+ +P
Sbjct: 23 QMKDSLKMYNNLVEQCFAHCVAARDGSFRSKALDKKEDECICRCAEKYIKLTQRVGFRFAEHQ---AAQGAAPSP 94
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 n=3 Tax=Caryophyllales TaxID=3524 RepID=TIM9_MESCR) HSP 1 Score: 74.3 bits (181), Expect = 6.940e-13 Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKA 190
Q +DSL MYNNLV +CF +C SFR K LD E C+ CAEKF+K + RVGLRF +L Q A
Sbjct: 28 QIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAA 90
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: UPI001CB9A365 (mitochondrial import inner membrane translocase subunit Tim9 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9A365) HSP 1 Score: 74.3 bits (181), Expect = 6.940e-13 Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKARE 196
Q +DSL MYNNLV +CF +C SF+ K LD E C+ CAEKF+K + RVGLRF +L Q A +
Sbjct: 28 QIRDSLRMYNNLVERCFTDCVESFKRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAATQ 92
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Match: A0A835WK89_9CHLO (zf-Tim10_DDP domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WK89_9CHLO) HSP 1 Score: 74.3 bits (181), Expect = 9.070e-13 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query: 2 QRKDSLAMYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDLQQQKAREGASAA 211
Q +DSL MYN LV +CF EC RSK L E +C++ C EKF+ +T+RVG+RFQ+ Q ++ A+AA
Sbjct: 27 QVRDSLKMYNKLVERCFKECVEDMRSKALTGKEEQCVSKCCEKFMHVTARVGMRFQEFFSQMEQQAAAAA 96 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25710.7004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25710.7004.1 >prot_H-paniculata_contig25710.7004.1 ID=prot_H-paniculata_contig25710.7004.1|Name=mRNA_H-paniculata_contig25710.7004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp MYNNLVFKCFGECTRSFRSKKLDDGEAKCINVCAEKFIKLTSRVGLRFQDback to top mRNA from alignment at H-paniculata_contig25710:739..3482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25710.7004.1 ID=mRNA_H-paniculata_contig25710.7004.1|Name=mRNA_H-paniculata_contig25710.7004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2744bp|location=Sequence derived from alignment at H-paniculata_contig25710:739..3482+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25710:739..3482+ >mRNA_H-paniculata_contig25710.7004.1 ID=mRNA_H-paniculata_contig25710.7004.1|Name=mRNA_H-paniculata_contig25710.7004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig25710:739..3482+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |