mRNA_H-paniculata_contig1108.699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1108.699.1
Unique NamemRNA_H-paniculata_contig1108.699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: D8LRQ0_ECTSI (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 5.850e-39
Identity = 71/100 (71.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MVGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            MV FVD QV ELKK W  KRQLAF  L L MIV S LMIWKS+MV+TKSESPVV+VL+ SM PA Q GD+LFL NGDE +R GE+VVFKI+ R+IPIVHR
Sbjct:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLSGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHR 100
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: A0A835Z4U9_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.640e-37
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    4 VGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            +  VD QV ELKK WK KRQLAF  L L MIV S LMIWKS+MV+T+SESPVV+VL+ SM PA Q GD+LFL N D+ IRVGE+VVFKI+ RDIPIVHR
Sbjct:    1 MDIVDKQVVELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVVTRSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHR 99
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: A0A7S3M735_9STRA (Signal peptidase I n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M735_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.510e-36
Identity = 68/96 (70.83%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   13 VDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            V NQV E+KK WK KRQL    L L MIVFS LMIWK +MV+TKSESPVV+VL+ SM PA Q GD+LFLTN D+ IR GEIVVFKI+ RDIPIVHR
Sbjct:    4 VKNQVVEIKKLWKNKRQLTLQALNLAMIVFSALMIWKGLMVVTKSESPVVVVLSGSMEPAFQRGDILFLTNQDDPIRAGEIVVFKIKDRDIPIVHR 99
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: A0A7S1U989_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.560e-36
Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 MVGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            M   V  QV ELKK W  KRQL F +L L MIVFS LMIWKS+MVLTKSESPVV+VL+ SM PA Q GD+LFL+N D  IRVGEIVVFKI+ RDIPIVHR
Sbjct:    1 MWEIVQMQVFELKKLWANKRQLLFQSLNLAMIVFSALMIWKSLMVLTKSESPVVVVLSGSMEPAFQRGDILFLSNHDSPIRVGEIVVFKIKDRDIPIVHR 100
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: A0A7S0SWE0_9STRA (Signal peptidase I n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE0_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.140e-36
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    4 VGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            +  V NQ  ELKK WK KRQL+F  L L MIVFS LMIWK +M +TKSESPVV+VL+ SM PA Q GD+LFL N D+ IRVGEIVVFKI+ RDIPIVHR
Sbjct:    1 MNIVKNQAFELKKLWKNKRQLSFQGLNLAMIVFSALMIWKGLMFITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHR 99
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: A0A7S2RVP6_9STRA (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.690e-35
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:   13 VDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            +D Q+ ELKK W+ KRQ  F  L L MIVFS LMIWK +M +TKSESPVV+VL+ SM PA Q GD+LFL N D+ IRVGE+VVFKI+ RDIPIVHR
Sbjct:    4 IDAQISELKKLWRNKRQFLFQALNLAMIVFSALMIWKGLMFITKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHR 99
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: A0A6V1QND9_HETAK (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK)

HSP 1 Score: 127 bits (319), Expect = 3.590e-35
Identity = 65/100 (65.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 MVGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            M+  ++ Q+ ELKK WK KR LAF  L L MIVFS LMIWKS+MV T+SESPVV+VL+ SM PA Q GD+LFLTN  + IR GE+VVFKI+ R+IPIVHR
Sbjct:    1 MMELIEQQLDELKKLWKNKRALAFQALNLAMIVFSALMIWKSLMVWTQSESPVVVVLSGSMEPAFQRGDILFLTNHQDPIRAGEVVVFKIKDREIPIVHR 100
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: A0A6U5HKR9_9STRA (Signal peptidase I n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5HKR9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.120e-34
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 MVGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            M   +D Q+ ELKK W  KRQLAF  L L MIVFS LMIWK +M +TKSESPVV+VL+ SM PA Q GD+LFL N +  + VG++VVFKI  RDIPIVHR
Sbjct:    1 MKDIIDKQIVELKKLWLNKRQLAFQALNLAMIVFSALMIWKGLMCVTKSESPVVVVLSGSMEPAFQRGDILFLDNSNPEVAVGDVVVFKIRDRDIPIVHR 100
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BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: F0YAE9_AURAN (Signal peptidase I n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YAE9_AURAN)

HSP 1 Score: 123 bits (309), Expect = 1.590e-33
Identity = 65/96 (67.71%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   13 VDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            VD Q+ ELKK WK KR L    L L MIVFS LMIWK +M +TKSESPVV+VL+ SM PA Q GD+LFL N D  IRVGE+VVFKI+ RDIPIVHR
Sbjct:    4 VDQQIFELKKLWKNKRLLLHQGLNLAMIVFSALMIWKGLMFVTKSESPVVVVLSGSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHR 99
[Close]
BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Match: W7TFR1_9STRA (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFR1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.330e-33
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 MVGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSESPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR 300
            M   V  Q+ ELKK W+  R L   +L L MIVFS LMIWK +M LTKSESPVV+VL+ SM PA Q GD+LFL N D+ IRVGEIVVFKI+ RDIPIVHR
Sbjct:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHR 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1108.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ0_ECTSI5.850e-3971.00Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A835Z4U9_9STRA2.640e-3769.70Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S3M735_9STRA1.510e-3670.83Signal peptidase I n=1 Tax=Spumella elongata TaxID... [more]
A0A7S1U989_9STRA1.560e-3671.00Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S0SWE0_9STRA2.140e-3668.69Signal peptidase I n=1 Tax=Chromulina nebulosa Tax... [more]
A0A7S2RVP6_9STRA1.690e-3566.67Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A6V1QND9_HETAK3.590e-3565.00Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A6U5HKR9_9STRA4.120e-3463.00Signal peptidase I n=1 Tax=Corethron hystrix TaxID... [more]
F0YAE9_AURAN1.590e-3367.71Signal peptidase I n=3 Tax=Pelagomonadales TaxID=5... [more]
W7TFR1_9STRA3.330e-3365.00Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1108contigH-paniculata_contig1108:15613..16656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue3.4e-30
Seed eggNOG ortholog2880.D8LRQ0
Preferred nameSEC11C
KEGG koko:K10686,ko:K13280
KEGG Pathwayko03060,ko04120,map03060,map04120
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.signal peptide processing
EggNOG OGsCOG0681@1,KOG3342@2759
Ec32 ortholog descriptionSec11 homolog, catalytic subunit of the Signal Peptidase Complex
Ec32 orthologEc-12_000620.1
EC3.4.21.89,6.2.1.45
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.9973118-CDS-H-paniculata_contig1108:15612..157851622928814.9973118-CDS-H-paniculata_contig1108:15612..15785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1108 15613..15785 +
1691480630.670751-CDS-H-paniculata_contig1108:15612..157851691480630.670751-CDS-H-paniculata_contig1108:15612..15785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1108 15613..15785 +
1622928815.0068731-CDS-H-paniculata_contig1108:16529..166561622928815.0068731-CDS-H-paniculata_contig1108:16529..16656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1108 16530..16656 +
1691480630.6834235-CDS-H-paniculata_contig1108:16529..166561691480630.6834235-CDS-H-paniculata_contig1108:16529..16656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1108 16530..16656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1108.699.1prot_H-paniculata_contig1108.699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1108 15613..16656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1108.699.1

>prot_H-paniculata_contig1108.699.1 ID=prot_H-paniculata_contig1108.699.1|Name=mRNA_H-paniculata_contig1108.699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MVGFVDNQVKELKKQWKRKRQLAFHTLYLVMIVFSGLMIWKSIMVLTKSE
SPVVIVLTDSMLPAIQHGDVLFLTNGDERIRVGEIVVFKIEGRDIPIVHR
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mRNA from alignment at H-paniculata_contig1108:15613..16656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1108.699.1 ID=mRNA_H-paniculata_contig1108.699.1|Name=mRNA_H-paniculata_contig1108.699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig1108:15613..16656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGGTTTGTGGACAATCAGGTGAAGGAGTTGAAAAAGCAATGGAA
GAGGAAGCGACAACTGGCGTTCCACACCCTGTACTTGGTCATGATCGTGT
TCTCAGGGCTGATGATATGGAAGTCGATCATGGTGCTCACGAAGTCTGAG
AGTCCTGTCGTCATTGTCTTGACGTAGGTATATTGATACCTGGGATAGAT
AAGTGTTGGATATATTGGGGGGAGGAAATAGAGGAGGGTATGATACTGGT
ACGCTGTTTGCGGTCATGTCGAATTGTGGTCAGTTTTTCATGTGTTCGCG
GATCATCGTTTTCCCCTATTTAGTGCAGGGCTCGATCTGCCCTTACCTTC
ACTTGGACTGGTTGCATTTTTTCTTCTGTATGGCAGTGTCATGTGCGTGT
TTGAGTTGGTAGAGAATAACACGAACATAGAGTAAGTAAATGGTGCCAAG
AGCCTACCTCTCCCAACTTGTCCCAGTAAGGGCAGTAGTCAGCTGGGGTG
TTACTGCTCATGGGGCCCCATTTCCTATCAGCACTAGTGTGTCTTCCAAA
ATGAGATCAAACTCTTAAATGAGGTTCAAGTCCAAAATAGAACTTTCCCT
AATCTACAACACTCATGACCAGTGATCTTCATTTGGAGTACCCAATGTAT
CTCAATAGTGCGGACGCAATACGACCGGCTACTGTGCGCAAACCACGTGC
CCAATGCATACCGTACGGCTAATAGCTGCACAATGATGCACGTGTCACGG
GCGCAAGAGGTTTATCCGGGTCAGGTTCGAACGGCCTTTAGATGTTATGG
TGATACAAATACGTCAGACGTCTCATCTTTCTCTCGCCCACCCACTCCCC
ACGGCGCCTCGTATGCCGTACCTACCCACGAAAATGTATCCCCATCTGAC
TATATCGTACTTAAAAGTGATTCAATGCTGCCAGCGATTCAACACGGAGA
TGTTCTGTTCCTAACCAATGGAGACGAGCGGATTCGGGTGGGCGAGATAG
TGGTGTTCAAGATTGAGGGCAGGGATATCCCCATCGTGCATCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1108:15613..16656+

>mRNA_H-paniculata_contig1108.699.1 ID=mRNA_H-paniculata_contig1108.699.1|Name=mRNA_H-paniculata_contig1108.699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig1108:15613..16656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGGGTTTGTGGACAATCAGGTGAAGGAGTTGAAAAAGCAATGGAA
GAGGAAGCGACAACTGGCGTTCCACACCCTGTACTTGGTCATGATCGTGT
TCTCAGGGCTGATGATATGGAAGTCGATCATGGTGCTCACGAAGTCTGAG
AGTCCTGTCGTCATTGTCTTGACATGGTGGGGTTTGTGGACAATCAGGTG
AAGGAGTTGAAAAAGCAATGGAAGAGGAAGCGACAACTGGCGTTCCACAC
CCTGTACTTGGTCATGATCGTGTTCTCAGGGCTGATGATATGGAAGTCGA
TCATGGTGCTCACGAAGTCTGAGAGTCCTGTCGTCATTGTCTTGACTGAT
TCAATGCTGCCAGCGATTCAACACGGAGATGTTCTGTTCCTAACCAATGG
AGACGAGCGGATTCGGGTGGGCGAGATAGTGGTGTTCAAGATTGAGGGCA
GGGATATCCCCATCGTGCATCGGTGATTCAATGCTGCCAGCGATTCAACA
CGGAGATGTTCTGTTCCTAACCAATGGAGACGAGCGGATTCGGGTGGGCG
AGATAGTGGTGTTCAAGATTGAGGGCAGGGATATCCCCATCGTGCATCGG
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