mRNA_H-paniculata_contig2567.6991.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2567.6991.1
Unique NamemRNA_H-paniculata_contig2567.6991.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2567.6991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2567contigH-paniculata_contig2567:764..1156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.1338005-CDS-H-paniculata_contig2567:763..11561622929760.1338005-CDS-H-paniculata_contig2567:763..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2567 764..1156 +
1691480999.0680103-CDS-H-paniculata_contig2567:763..11561691480999.0680103-CDS-H-paniculata_contig2567:763..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2567 764..1156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2567.6991.1prot_H-paniculata_contig2567.6991.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2567 764..1156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2567.6991.1

>prot_H-paniculata_contig2567.6991.1 ID=prot_H-paniculata_contig2567.6991.1|Name=mRNA_H-paniculata_contig2567.6991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MARYCQTSGHAHVKAVNKILAYLHSTINEGIANEGGNHTELLGTLMQATQ
RIWTIESPFRGYYSFTMEAEYVALVEVENEILFLPQIQQSMESNIGEYRT
LVLEENEGTTKMANTLISSDGIKHRDVKYHS
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mRNA from alignment at H-paniculata_contig2567:764..1156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2567.6991.1 ID=mRNA_H-paniculata_contig2567.6991.1|Name=mRNA_H-paniculata_contig2567.6991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig2567:764..1156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGATATTGCCAAACATCAGGCCATGCTCACGTGAAGGCGGTAAA
CAAGATTCTGGCGTACTTACATAGTACCATAAACGAGGGGATTGCCAACG
AAGGGGGAAACCACACTGAGCTACTGGGTACACTGATGCAGGCTACGCAA
CGGATCTGGACGATAGAATCCCCGTTTAGAGGATATTACAGTTTTACAAT
GGAGGCCGAGTACGTCGCATTGGTAGAGGTGGAAAATGAGATACTGTTCC
TACCGCAAATCCAACAGTCCATGGAGTCGAACATAGGGGAGTACAGAACA
CTGGTCTTGGAAGAGAACGAAGGGACTACTAAAATGGCCAATACCCTCAT
CAGTAGCGACGGGATCAAGCACAGGGACGTCAAGTACCACTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2567:764..1156+

>mRNA_H-paniculata_contig2567.6991.1 ID=mRNA_H-paniculata_contig2567.6991.1|Name=mRNA_H-paniculata_contig2567.6991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig2567:764..1156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGATATTGCCAAACATCAGGCCATGCTCACGTGAAGGCGGTAAA
CAAGATTCTGGCGTACTTACATAGTACCATAAACGAGGGGATTGCCAACG
AAGGGGGAAACCACACTGAGCTACTGGGTACACTGATGCAGGCTACGCAA
CGGATCTGGACGATAGAATCCCCGTTTAGAGGATATTACAGTTTTACAAT
GGAGGCCGAGTACGTCGCATTGGTAGAGGTGGAAAATGAGATACTGTTCC
TACCGCAAATCCAACAGTCCATGGAGTCGAACATAGGGGAGTACAGAACA
CTGGTCTTGGAAGAGAACGAAGGGACTACTAAAATGGCCAATACCCTCAT
CAGTAGCGACGGGATCAAGCACAGGGACGTCAAGTACCACTCAATGGCAA
GATATTGCCAAACATCAGGCCATGCTCACGTGAAGGCGGTAAACAAGATT
CTGGCGTACTTACATAGTACCATAAACGAGGGGATTGCCAACGAAGGGGG
AAACCACACTGAGCTACTGGGTACACTGATGCAGGCTACGCAACGGATCT
GGACGATAGAATCCCCGTTTAGAGGATATTACAGTTTTACAATGGAGGCC
GAGTACGTCGCATTGGTAGAGGTGGAAAATGAGATACTGTTCCTACCGCA
AATCCAACAGTCCATGGAGTCGAACATAGGGGAGTACAGAACACTGGTCT
TGGAAGAGAACGAAGGGACTACTAAAATGGCCAATACCCTCATCAGTAGC
GACGGGATCAAGCACAGGGACGTCAAGTACCACTCA
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