mRNA_H-paniculata_contig25667.6990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25667.6990.1
Unique NamemRNA_H-paniculata_contig25667.6990.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.230e-36
Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  113 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 242
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BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.440e-34
Identity = 60/129 (46.51%), Postives = 88/129 (68.22%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLV 387
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP LFC  +  I+ K R +++ LGV L AY+DD++
Sbjct:  112 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDII 240
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BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.160e-33
Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  502 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 631
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BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.280e-33
Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  481 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 610
[Close]
BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.300e-33
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E PA  I+ MD+G RR I    G+ QG+G+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  203 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISL 332
[Close]
BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.010e-32
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + +   P L  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:  480 QFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 609
[Close]
BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.200e-32
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+G AV GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP LFC  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:   28 QFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 157
[Close]
BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.210e-32
Identity = 60/130 (46.15%), Postives = 87/130 (66.92%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP L C  +  I+ K R +++ LGV L AY+DD+ L
Sbjct:   69 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLSCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 198
[Close]
BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.900e-32
Identity = 58/130 (44.62%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC++AFN+ KR  I+ + A   P +  ++ +CY E PA  I+ MD+GERR I   +G+ QG+G+GP LFC  +  I+ K R  ++ LGV L AY+DD+ L
Sbjct:  105 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISL 234
[Close]
BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.280e-31
Identity = 59/130 (45.38%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAIHTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFCMPMGLILRKCREQFEALGVELFAYLDDLVL 390
            Q+GVAV+GG E + + A+  HQ GHW++  DC+NAFN+ KR AI+ + A   P L  ++ +CY E  A  I+ MD+GERR I   +G+ QG+G+GP LF   +  I+ K R +++ LGV L AY+DD+ L
Sbjct:   69 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISL 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25667.6990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE3.230e-3646.92Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE3.440e-3446.51Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE4.160e-3346.92Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE4.280e-3346.92Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE6.300e-3346.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKQ2_9PHAE1.010e-3246.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE3.200e-3246.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUZ8_9PHAE4.210e-3246.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE9.900e-3244.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDD0_9PHAE1.280e-3145.38Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25667contigH-paniculata_contig25667:3072..3464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score68.9
Seed ortholog evalue2e-09
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.0852368-CDS-H-paniculata_contig25667:3071..34641622929760.0852368-CDS-H-paniculata_contig25667:3071..3464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25667 3072..3464 +
1691480999.0561595-CDS-H-paniculata_contig25667:3071..34641691480999.0561595-CDS-H-paniculata_contig25667:3071..3464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25667 3072..3464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25667.6990.1prot_H-paniculata_contig25667.6990.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25667 3072..3464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25667.6990.1

>prot_H-paniculata_contig25667.6990.1 ID=prot_H-paniculata_contig25667.6990.1|Name=mRNA_H-paniculata_contig25667.6990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
QYGVAVSGGAELMGLRAKAHHQLGHWLIALDCTNAFNSIKRAAILEEVAI
HTPGLTPFVTKCYGEKPANIIFQMDTGERRRIFSNTGIHQGNGLGPDLFC
MPMGLILRKCREQFEALGVELFAYLDDLVLV
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mRNA from alignment at H-paniculata_contig25667:3072..3464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25667.6990.1 ID=mRNA_H-paniculata_contig25667.6990.1|Name=mRNA_H-paniculata_contig25667.6990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig25667:3072..3464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATGGAGTAGCGGTCTCGGGCGGCGCGGAGCTCATGGGTCTCCGTGC
GAAAGCACATCACCAACTGGGGCATTGGCTTATCGCCCTCGACTGTACCA
ATGCATTCAACTCCATCAAGCGGGCAGCGATCTTGGAAGAAGTGGCAATC
CACACCCCGGGACTAACACCTTTCGTTACCAAATGCTACGGGGAGAAGCC
GGCAAATATTATTTTCCAGATGGATACCGGCGAACGTAGGAGAATATTCT
CGAACACGGGAATCCACCAGGGGAATGGACTGGGACCCGACCTCTTCTGC
ATGCCCATGGGACTGATCTTGCGCAAGTGCCGAGAACAATTCGAGGCTCT
GGGGGTGGAGCTATTTGCCTACCTGGACGATCTGGTGCTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig25667:3072..3464+

>mRNA_H-paniculata_contig25667.6990.1 ID=mRNA_H-paniculata_contig25667.6990.1|Name=mRNA_H-paniculata_contig25667.6990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig25667:3072..3464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATGGAGTAGCGGTCTCGGGCGGCGCGGAGCTCATGGGTCTCCGTGC
GAAAGCACATCACCAACTGGGGCATTGGCTTATCGCCCTCGACTGTACCA
ATGCATTCAACTCCATCAAGCGGGCAGCGATCTTGGAAGAAGTGGCAATC
CACACCCCGGGACTAACACCTTTCGTTACCAAATGCTACGGGGAGAAGCC
GGCAAATATTATTTTCCAGATGGATACCGGCGAACGTAGGAGAATATTCT
CGAACACGGGAATCCACCAGGGGAATGGACTGGGACCCGACCTCTTCTGC
ATGCCCATGGGACTGATCTTGCGCAAGTGCCGAGAACAATTCGAGGCTCT
GGGGGTGGAGCTATTTGCCTACCTGGACGATCTGGTGCTGGTACAGTATG
GAGTAGCGGTCTCGGGCGGCGCGGAGCTCATGGGTCTCCGTGCGAAAGCA
CATCACCAACTGGGGCATTGGCTTATCGCCCTCGACTGTACCAATGCATT
CAACTCCATCAAGCGGGCAGCGATCTTGGAAGAAGTGGCAATCCACACCC
CGGGACTAACACCTTTCGTTACCAAATGCTACGGGGAGAAGCCGGCAAAT
ATTATTTTCCAGATGGATACCGGCGAACGTAGGAGAATATTCTCGAACAC
GGGAATCCACCAGGGGAATGGACTGGGACCCGACCTCTTCTGCATGCCCA
TGGGACTGATCTTGCGCAAGTGCCGAGAACAATTCGAGGCTCTGGGGGTG
GAGCTATTTGCCTACCTGGACGATCTGGTGCTGGTA
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