mRNA_H-paniculata_contig25663.6989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25663.6989.1
Unique NamemRNA_H-paniculata_contig25663.6989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25663.6989.1 vs. uniprot
Match: D8LIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG0_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 1.180e-95
Identity = 152/293 (51.88%), Postives = 209/293 (71.33%), Query Frame = 1 
Query:    1 QVAGAMAIGALIKGDMQAGDVYRVALDFHLSGITSNVEPKAAPALGLMALYWQHLGDDQLKLHWLAYLRGSLGNGHVSLKYLVLCIQYLDYAVEARPRPGVSSLTATRRSLHTVSCLLSYMPNIINPSGGQAIAVAFCDDLGTCLRALQNDTHAEVAKLLCKSLRALLLVMLGRGDRAMILLQSIPMLIQRSEGGNPDAMRALPLSWDALLISGALTFLLGQLPTYRRIRAAVVTSVNTLPPEARWSYCLPNPDSDPEAYIDHLCDSSSNICSIVCSIAAKTSFGQLPFYSDD 879
            QV GA+++GALI GD +A   Y ++L +HL  +         P+L L+ALYWQH G+D+LK+ W+ + R  L N       LVL I+YLDYA EA PRPGV  + ++ R+LH++SCLL+ MP I+NP+ G+A A+  C++L  C+  L+N+T  E+  LLC SLRALLL MLG+ D A  +L +IP L+    GGNP  +RALPLSWDALLI+ AL+FLLGQ  TY+R+R+AV  + + +P EARW++CLP P SDP+AY+ H C+SSSNIC+I+C IA++T+FG  PFYSD+
Sbjct:  171 QVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNGLTGVGVVPSLALVALYWQHRGEDELKIEWVGHARRVLANVQSIPANLVLSIEYLDYAREAHPRPGVELMPSSHRALHSISCLLANMPAIVNPAVGRAAAIGSCEELSICILGLRNETSVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATD-VPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDE 462
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BLAST of mRNA_H-paniculata_contig25663.6989.1 vs. uniprot
Match: A0A6H5JAW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW1_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.550e-56
Identity = 117/293 (39.93%), Postives = 157/293 (53.58%), Query Frame = 1 
Query:    1 QVAGAMAIGALIKGDMQAGDVYRVALDFHLSGITSNVEPKAAPALGLMALYWQHLGDDQLKLHWLAYLRGSLGNGHVSLKYLVLCIQYLDYAVEARPRPGVSSLTATRRSLHTVSCLLSYMPNIINPSGGQAIAVAFCDDLGTCLRALQNDTHAEVAKLLCKSLRALLLVMLGRGDRAMILLQSIPMLIQRSEGGNPDAMRALPLSWDALLISGALTFLLGQLPTYRRIRAAVVTSVNTLPPEARWSYCLPNPDSDPEAYIDHLCDSSSNICSIVCSIAAKTSFGQLPFYSDD 879
            QV GA+++GALI GD +A   Y ++L +HL  + S       P+L L+ALYWQH G+D+LK+ W+ + R  L N                                                                             T  E+  LLC SLRALLL MLG+ D A  +L +IP L+    GGNP  +RALPLSWDALLI+ AL+FLLGQ  TY+R+R+AV  + + +P EARW++CLP P SDP+AY+ H C+SSSNIC+I+C IA++T+FG  PFYSD+
Sbjct:  179 QVVGAISLGALISGDQEAAHAYYLSLRYHLGDVNSLTGVGVVPSLALVALYWQHRGEDELKIEWVGHARRVLAN---------------------------------------------------------------------------VQTSVELTLLLCTSLRALLLAMLGQRDAATDVLDTIPSLVDVGSGGNPSVVRALPLSWDALLIASALSFLLGQGATYQRLRSAVELATD-VPAEARWTFCLPEPGSDPQAYVVHECNSSSNICNIMCEIASRTNFGAQPFYSDE 395
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BLAST of mRNA_H-paniculata_contig25663.6989.1 vs. uniprot
Match: A0A835ZC43_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC43_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.150e-54
Identity = 122/291 (41.92%), Postives = 165/291 (56.70%), Query Frame = 1 
Query:    1 QVAGAMAIGALIKGDMQAGDVYRVALDFHLSGITSNVEPKAAPALGLMALYWQHLGDDQLKLHWLAYLRGSLGN-GHVSLKYLVLCIQYLDYAVEARPRPGVSSLTATRRSLHTVSCLLSYMPNIINPSGGQAIAVAFCDDLGTCLRALQNDTHAEVAKLLCKSLRALLLVMLGRGDRAMILLQSIPMLIQRSEGGNPDAMRALPLSWDALLISGALTFLLGQLPTYRRIRAAVVTSVNTLPPEARWSYCLPNPDSDPEAYIDHLCDSSSNICSIVCSIAAKTSFGQLPFY 870
            Q+AGA+A+GALI+GD  A + Y  A   HL  + S   P+AA  L ++A YWQ+ GDD  K  +L + R  L   G V    L LC+++LDY    RP     +L    R+LHTVSC+L+ + +++ PS G A A+A+C  L  C  AL   T A +  LLC +L + LLVMLGR   A   L  +P ++       PDA RALPLSWDA LI+  L+FLL    TY R+ AAV  + N      +W+  LP P + P  Y+ H C S+SNICS++C +   T  G   FY
Sbjct:  254 QLAGALAVGALIRGDRVA-EAYHAAARAHLKALFSAPSPEAASVLCMLAFYWQYRGDDDKKGVYLRHARLGLDRAGAVPPLELQLCMEHLDYETAGRPVRDARALPPRLRALHTVSCVLADIQDLMEPSAGPAPALAYCAQLADCSAAL--GTGAGLPALLCAALHSFLLVMLGRRADAAAALSRVPDVLDAC----PDAPRALPLSWDAALIAATLSFLLRLEATYARLHAAVERAQNATA-ATQWTCRLPAPGAPPAQYLGHACRSTSNICSVICKVGHHTQCGMHSFY 536
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25663.6989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIG0_ECTSI1.180e-9551.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAW1_9PHAE1.550e-5639.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC43_9STRA2.150e-5441.92Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25663contigH-paniculata_contig25663:579..3292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-18_003820.1
Exons4
Model size879
Cds size864
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25663.6989.1prot_H-paniculata_contig25663.6989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25663 579..3277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.9171362-CDS-H-paniculata_contig25663:578..7281622929759.9171362-CDS-H-paniculata_contig25663:578..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 579..728 -
1691480999.0140784-CDS-H-paniculata_contig25663:578..7281691480999.0140784-CDS-H-paniculata_contig25663:578..728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 579..728 -
1622929759.9381635-CDS-H-paniculata_contig25663:1542..18181622929759.9381635-CDS-H-paniculata_contig25663:1542..1818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 1543..1818 -
1691480999.0229928-CDS-H-paniculata_contig25663:1542..18181691480999.0229928-CDS-H-paniculata_contig25663:1542..1818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 1543..1818 -
1622929759.9585187-CDS-H-paniculata_contig25663:2387..25991622929759.9585187-CDS-H-paniculata_contig25663:2387..2599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 2388..2599 -
1691480999.030539-CDS-H-paniculata_contig25663:2387..25991691480999.030539-CDS-H-paniculata_contig25663:2387..2599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 2388..2599 -
1622929759.9953482-CDS-H-paniculata_contig25663:3051..32771622929759.9953482-CDS-H-paniculata_contig25663:3051..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 3052..3277 -
1691480999.0379283-CDS-H-paniculata_contig25663:3051..32771691480999.0379283-CDS-H-paniculata_contig25663:3051..3277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25663 3052..3277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929760.0283728-UTR-H-paniculata_contig25663:3277..32921622929760.0283728-UTR-H-paniculata_contig25663:3277..3292Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25663 3278..3292 -
1691480999.045238-UTR-H-paniculata_contig25663:3277..32921691480999.045238-UTR-H-paniculata_contig25663:3277..3292Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25663 3278..3292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25663.6989.1

>prot_H-paniculata_contig25663.6989.1 ID=prot_H-paniculata_contig25663.6989.1|Name=mRNA_H-paniculata_contig25663.6989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=288bp
MAIGALIKGDMQAGDVYRVALDFHLSGITSNVEPKAAPALGLMALYWQHL
GDDQLKLHWLAYLRGSLGNGHVSLKYLVLCIQYLDYAVEARPRPGVSSLT
ATRRSLHTVSCLLSYMPNIINPSGGQAIAVAFCDDLGTCLRALQNDTHAE
VAKLLCKSLRALLLVMLGRGDRAMILLQSIPMLIQRSEGGNPDAMRALPL
SWDALLISGALTFLLGQLPTYRRIRAAVVTSVNTLPPEARWSYCLPNPDS
DPEAYIDHLCDSSSNICSIVCSIAAKTSFGQLPFYSDD
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mRNA from alignment at H-paniculata_contig25663:579..3292-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25663.6989.1 ID=mRNA_H-paniculata_contig25663.6989.1|Name=mRNA_H-paniculata_contig25663.6989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2714bp|location=Sequence derived from alignment at H-paniculata_contig25663:579..3292- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGCTGGGGCAATGGCTATCGGCGCGTTAATCAAAGGAGATATGCA
GGCGGGGGATGTGTATCGAGTCGCTCTGGATTTTCACCTTAGCGGGATTA
CGTCTAACGTCGAGCCGAAAGCGGCCCCGGCTTTAGGACTGATGGCGCTG
TACTGGCAGCATTTGGGTGACGATCAGCTGAAGCTGCACTGGTTGGCGTA
CTTGCGCGGCTCCTTGGGGAACGGGCACGTGAGTTTGAAATGTATCACAC
ACAATGTATATTGCGCCCTTTCGTCCGTGTTGCCATAGCATTTTTTATGT
CTGGTTTATCTACATGTTTATTATTTCACCATTAGTCTCTCTTCATTGGA
ATCGCTTTCATGTCCCCGAAATGCCCGTTTTCACTGATGTGGAAGACGGC
ATTGCTCCCGCATGCAACATTATTATTAATACCGGAAGGGCCAAAAACGT
GGCGTAGTTGTTGAAAAAAAGAATATGTTAACAAGGTGTTGTAGTTTTTT
TTTTGACATAATAAGAATAAGGATAGTCTAGATTTTGACAACACGTTTTT
CCGAGTTTGTTCTTAATAAGAAATAAATTTTACTTATGTTCTCATTATTG
CTGCTACTGCAGCTAATGCCGCCGCTGCCGCCGCTGCCGCTGCTGCTGTC
GTTCTTTTTGTTTCTATTCTTGCTGTATTACAGGTGTCGGGAGACCTCGT
CCTCTGCATCCAGTACCTCGACTACGCGGTGGAGGCCCGTCCCAGGCCTG
GGGTCTCGTCTCTGACTGCCACGCGAAGGTCGCTCCACACCGTCTCCTGC
TTGCTCTCCTACATGCCGAACATAATCAACCCCAGCGGCGGACAGGCCAT
CGCCGTGGCCTTCTGCGATGACCTCGGGACGTGCCTTCGCGCTTTGCAGA
ACGACGTGAGAACAAGGTTTTGTCGTGTTCTGAGGTGGGGGGCGTAGATT
ATTGATGATATATATTTTTTGTTGAATCATGACCACTATACAAATTTAGT
AATGATGACGGTTGAAATGCATGGCAGACAGTTCAAAATTTTGCGTAATT
TTATTAAACAAATTTAGGTTAAGAGCTGACTGACGGTGCTATTGTTTTGG
ACGAATTACATGATATTTTATTCCTCATACAAGCAGACTTTTCTTGACGA
CGAGCAAAACCAAAAAGAAGCACCAGGACCGACCACTCCACGCGCCGTTA
CAGAGGTTTGGAAATGAGTGTCCTTTAGTTGGTAATTGTCCTTTCAAAAT
GGGTCATTTGCCACTATGTGGGAAATAGTCTGATGCGCCTATTATTAAAT
CGCTACACTGGGGCCCGACCGTTAGTACATGATTGTTGTGTTCGTAGTCT
TTGCTATGGCATGCTATATTCCACTTGTCTTGTATACACCACACATCTGA
TGATATGATGGATTTATTATCCTCTCTTGTACCCCTTCCGTTCCCTGCCC
TAACCACGCACTGAATCTGATTAGACACACGCCGAAGTTGCGAAACTCCT
ATGTAAGTCCCTCCGGGCGCTCCTCCTGGTCATGCTAGGCCGCGGCGACA
GGGCCATGATCTTGCTGCAGTCCATCCCGATGTTGATTCAGAGGTCGGAA
GGGGGAAATCCGGACGCCATGCGCGCGCTGCCGCTGAGCTGGGACGCGCT
GCTGATCTCCGGCGCGCTCACGTTTCTTCTCGGACAGCTCCCGACCTATC
GGAGGATTCGCGCGGCTGTTGTGACGAGCGTAAATACCCTTCCACCGGAG
GTAGGTCTATATACCCTTTCGCCCCTATTTATTCCCTGGGTGTATCTTCA
TTTTTTGGACAGACGTCGCATCAGACCATGAGTGTCGAGCGCACTTGTTT
ACGGGCTCTGTCCAGGAAGAGGCGATGATTGTTTTTTTGTGGGCTGATTG
ATCATTTCTCACATAACAACCGATCGTCAAAAGCGGTGTTGGTCCATGGT
GGACATCTCCATTCGGAAGAAAAAAACGTGAAGCCTGCGCTTGGCTAGCG
TGTCTTAGGTGATCAGTAGTCCACGGATGCACCGCTTGCTTGCGCAGTGT
GGTCTTGTGACATGACATTTGCACATTGATGACTTTTTTGTTGTCGTTCG
ATTTTATTCATCTGTATATCTGCCAATAAACGATGTGACCGTTGACGTTG
TTAAGATGAATATAACACCAATAGTGCTTTTCTTGCCCGTTGATCTTTTT
GTCTGAGTCTTGAGAAGAATAGTTGCTGTTGCAGCAGTCAAATGCACTTG
CGTTTTCTACCCGGGTATTGGAGAGGGATGAAATCACAAACCAACGACGG
TGCTTCCGGGCGGACTAGTTCATAAGGGAGATGATTTACGTGTTTATTCG
GGTGCCGCATTTCAATGGATTAGTCGGGAAACACCGGGCGACAAGAGTCC
CTCTGTTTGTTGTGGAGGTGGCCAACTAACACCCGTCCAAGTGCAATGGA
CTATCTGCAAGGCTCTCGTGGCCCGCCTCTTTTTTTTCTATTGTTTGGTG
CAACAAGAACAAAACCGCTGTTAAAAATCACAATGTAAAAAATGATTTTT
GCTCAATTTTATAGGCCCGCTGGAGCTACTGCCTGCCGAACCCCGACAGC
GACCCCGAAGCCTACATCGACCACTTGTGCGATTCCAGCTCCAACATCTG
CTCCATCGTCTGCTCTATCGCCGCCAAGACGAGTTTCGGACAGCTCCCCT
TCTACTCGGACGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig25663:579..3292-

>mRNA_H-paniculata_contig25663.6989.1 ID=mRNA_H-paniculata_contig25663.6989.1|Name=mRNA_H-paniculata_contig25663.6989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at H-paniculata_contig25663:579..3292- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTATCGGCGCGTTAATCAAAGGAGATATGCAGGCGGGGGATGTGTA
TCGAGTCGCTCTGGATTTTCACCTTAGCGGGATTACGTCTAACGTCGAGC
CGAAAGCGGCCCCGGCTTTAGGACTGATGGCGCTGTACTGGCAGCATTTG
GGTGACGATCAGCTGAAGCTGCACTGGTTGGCGTACTTGCGCGGCTCCTT
GGGGAACGGGCACGTGAGTTTGAAATATGGCTATCGGCGCGTTAATCAAA
GGAGATATGCAGGCGGGGGATGTGTATCGAGTCGCTCTGGATTTTCACCT
TAGCGGGATTACGTCTAACGTCGAGCCGAAAGCGGCCCCGGCTTTAGGAC
TGATGGCGCTGTACTGGCAGCATTTGGGTGACGATCAGCTGAAGCTGCAC
TGGTTGGCGTACTTGCGCGGCTCCTTGGGGAACGGGCACGTGAGTTTGAA
ATACCTCGTCCTCTGCATCCAGTACCTCGACTACGCGGTGGAGGCCCGTC
CCAGGCCTGGGGTCTCGTCTCTGACTGCCACGCGAAGGTCGCTCCACACC
GTCTCCTGCTTGCTCTCCTACATGCCGAACATAATCAACCCCAGCGGCGG
ACAGGCCATCGCCGTGGCCTTCTGCGATGACCTCGGGACGTGCCTTCGCG
CTTTGCAGAACGACACCTCGTCCTCTGCATCCAGTACCTCGACTACGCGG
TGGAGGCCCGTCCCAGGCCTGGGGTCTCGTCTCTGACTGCCACGCGAAGG
TCGCTCCACACCGTCTCCTGCTTGCTCTCCTACATGCCGAACATAATCAA
CCCCAGCGGCGGACAGGCCATCGCCGTGGCCTTCTGCGATGACCTCGGGA
CGTGCCTTCGCGCTTTGCAGAACGACACACACGCCGAAGTTGCGAAACTC
CTATGTAAGTCCCTCCGGGCGCTCCTCCTGGTCATGCTAGGCCGCGGCGA
CAGGGCCATGATCTTGCTGCAGTCCATCCCGATGTTGATTCAGAGGTCGG
AAGGGGGAAATCCGGACGCCATGCGCGCGCTGCCGCTGAGCTGGGACGCG
CTGCTGATCTCCGGCGCGCTCACGTTTCTTCTCGGACAGCTCCCGACCTA
TCGGAGGATTCGCGCGGCTGTTGTGACGAGCGTAAATACCCTTCCACCGG
AGACACACGCCGAAGTTGCGAAACTCCTATGTAAGTCCCTCCGGGCGCTC
CTCCTGGTCATGCTAGGCCGCGGCGACAGGGCCATGATCTTGCTGCAGTC
CATCCCGATGTTGATTCAGAGGTCGGAAGGGGGAAATCCGGACGCCATGC
GCGCGCTGCCGCTGAGCTGGGACGCGCTGCTGATCTCCGGCGCGCTCACG
TTTCTTCTCGGACAGCTCCCGACCTATCGGAGGATTCGCGCGGCTGTTGT
GACGAGCGTAAATACCCTTCCACCGGAGGCCCGCTGGAGCTACTGCCTGC
CGAACCCCGACAGCGACCCCGAAGCCTACATCGACCACTTGTGCGATTCC
AGCTCCAACATCTGCTCCATCGTCTGCTCTATCGCCGCCAAGACGAGTTT
CGGACAGCTCCCCTTCTACTCGGACGACGCCCGCTGGAGCTACTGCCTGC
CGAACCCCGACAGCGACCCCGAAGCCTACATCGACCACTTGTGCGATTCC
AGCTCCAACATCTGCTCCATCGTCTGCTCTATCGCCGCCAAGACGAGTTT
CGGACAGCTCCCCTTCTACTCGGACGAC
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