prot_H-paniculata_contig2564.6984.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2564.6984.1
Unique Nameprot_H-paniculata_contig2564.6984.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length347
Homology
BLAST of mRNA_H-paniculata_contig2564.6984.1 vs. uniprot
Match: A0A6H5LCE2_9PHAE (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE2_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.370e-53
Identity = 181/362 (50.00%), Postives = 200/362 (55.25%), Query Frame = 0
Query:    3 VTRQSIFELANALRDTAVPSNLPSQLRQRGMGGQNRGDVSSAHARFQDDFHNRGRAVEKANAERGGGGRSSSSKPVQLLYTKNWRGQEVVVEIEQSDEDEXXXXXXXXFDAXXXXXXXXXXXXXXXXANXXXXXXXXXXXXXMSGLLPSRASIKKKAAAVALKERQAAKRAKKALPGFLKGSRISGTDGNASSEVEDLSDDDADGVNGDSSLAVGGEGAGGSGAHARRLGAAAVNSVEELDEFKKRLLRETERMKQVWRRQQIERRVEAGLRKWWEVEDDDT----------------------AVEAGQNGCSTGGSRGGGGVAASGVLVEFRGRRVPIEALTPEDAAEMSPAEYIKFYNL 342
            V R+SIFEL ++LRDT VPSNLPSQLRQRGMGGQ RGDVSSAHARFQDDFH+RGRA +KA AERG  G  +SS+PVQ+LYTKNWRG+EVVVEIEQS                    XXXXXXXXXXXA  XXXXXXXXXXXX   LLPSRA++K+KAA           RAKKALP FLKGS ISG   N +                                 ARRLG AAV SV E DE KKRL   TERMKQVWRRQQ                                          A +A  +    G S G G      V V F    VPIEALT ED A+MS  +Y +FYN+
Sbjct:  206 VPRESIFELVHSLRDTVVPSNLPSQLRQRGMGGQQRGDVSSAHARFQDDFHHRGRAADKAAAERGAAGGRASSRPVQVLYTKNWRGEEVVVEIEQS--------------------XXXXXXXXXXXAEGXXXXXXXXXXXXXGLLLPSRAALKRKAADAXXXXXXXXXRAKKALPTFLKGSAISGNYNNTADXXXXXXXXXXXXXXXXXXXXXX--------XXARRLGVAAVTSVAERDEMKKRLRPWTERMKQVWRRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGAPQARTSARLLGLSAGVGAGQRFRVGVRF----VPIEALTEEDIAKMSAEDYTRFYNV 535          
BLAST of mRNA_H-paniculata_contig2564.6984.1 vs. uniprot
Match: D8LCF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF2_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 3.320e-39
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 0
Query:    3 VTRQSIFELANALRDTAVPSNLPSQLRQRGMGGQNRGDVSSAHARFQDDFHNRGRAVEKANAERGGGGRSSSSKPVQLLYTKNWRGQEVVVEIEQSDE 100
            V R+SIFEL ++LRD  VPSNLPSQLRQRGMGGQ RGDVSSAHARFQDDFH+RGRA +KA AERG  G  +SS+PVQ+LYTKNWRG+EVVVEIEQS++
Sbjct:    4 VPRESIFELVHSLRDIVVPSNLPSQLRQRGMGGQQRGDVSSAHARFQDDFHHRGRAADKAAAERGAAGGRASSRPVQVLYTKNWRGEEVVVEIEQSED 101          
BLAST of mRNA_H-paniculata_contig2564.6984.1 vs. uniprot
Match: A0A836CC40_9STRA (TFIIE alpha subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC40_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.920e-6
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 0
Query:   15 LRDTAVPSNLPSQLRQRGMGGQNRGDVSSAH-ARFQDDFHNRGRAVEKANAERGGGGRSSSSKPVQLLYTKNWRGQEVVVEIEQSDED 101
            L D  VPSNLPS+LR RG+GG  RG   ++  ARF+DD  +       A   +GG G   S++ V LLY +N  G EVVVEIE SD D
Sbjct:  281 LHDKPVPSNLPSELRARGVGGGARGSHGASKLARFRDDRFSLHAGY--AAGTKGGDGAHGSNRAVDLLYARNAAGYEVVVEIE-SDSD 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2564.6984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LCE2_9PHAE1.370e-5350.00HTH TFE/IIEalpha-type domain-containing protein n=... [more]
D8LCF2_ECTSI3.320e-3977.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC40_9STRA2.920e-648.86TFIIE alpha subunit-domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2564contigH-paniculata_contig2564:11064..17030 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2564.6984.1mRNA_H-paniculata_contig2564.6984.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2564 11064..17030 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2564.6984.1 ID=prot_H-paniculata_contig2564.6984.1|Name=mRNA_H-paniculata_contig2564.6984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=347bp
SSVTRQSIFELANALRDTAVPSNLPSQLRQRGMGGQNRGDVSSAHARFQD
DFHNRGRAVEKANAERGGGGRSSSSKPVQLLYTKNWRGQEVVVEIEQSDE
DEADEDWADEFDADGDNGDGGDGDDDDVDANGGGGGGGGGGGGGMSGLLP
SRASIKKKAAAVALKERQAAKRAKKALPGFLKGSRISGTDGNASSEVEDL
SDDDADGVNGDSSLAVGGEGAGGSGAHARRLGAAAVNSVEELDEFKKRLL
RETERMKQVWRRQQIERRVEAGLRKWWEVEDDDTAVEAGQNGCSTGGSRG
GGGVAASGVLVEFRGRRVPIEALTPEDAAEMSPAEYIKFYNLAAWR*
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