mRNA_H-paniculata_contig25637.6983.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI) HSP 1 Score: 79.0 bits (193), Expect = 1.020e-14 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 139 PVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
PV + + K W EA+ E + +E WT V ++ KG SA+W F +DE+GNV + +ARLVARG+SQ+ +D+ E FAP
Sbjct: 174 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAP 261
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI) HSP 1 Score: 79.0 bits (193), Expect = 1.780e-14 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 139 PVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
PV + + K W EA+ E + +E WT V ++ KG SA+W F +DE+GNV + +ARLVARG+SQ+ +D+ E FAP
Sbjct: 549 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAP 636
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI) HSP 1 Score: 73.9 bits (180), Expect = 1.050e-12 Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 1
Query: 43 KSEFACLCLCEDFAFACGVDPPLGHVTDTEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVD--SVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
K E A + G DP ++E P + + + W EA++VE + L+N WT VD + RK +A+W F D GNV+K +ARLVARGF+Q H +D+ + + P
Sbjct: 836 KMEMAMHNAATEMVMLVGQDP-----VASQEDPQMLAQARASPNWPKWEEAIKVELDSLDNTGTWTIVDLPAARKA---ITAKWVFKTKQDADGNVSKYKARLVARGFTQMHGIDYHDTYLP 949
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 9.170e-11 Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 106 PLGHV-TDTEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFA 399
P+G +D E P+ + D+ K W A++ E +G + +T V + +G ++W F+W +E+G + +AR+VARGFSQ H +DF F+
Sbjct: 96 PIGQKPSDVEAVPMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFS 194
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A392MKZ8_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MKZ8_9FABA) HSP 1 Score: 68.2 bits (165), Expect = 9.390e-11 Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 133 EPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
+ P F++++K +W +A+ E E +EN W + ++ G+N +W F +E+G + K +ARLV +G+SQ+H VD+ EVFAP
Sbjct: 48 DDPKNFAEVEKFE---VWRKAMDQEMESIENSNTWH-LTTLPDGANAIGVKWIFKTKYNEKGEIEKHKARLVDKGYSQKHGVDYNEVFAP 133
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: Q9ZQE9_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQE9_ARATH) HSP 1 Score: 67.4 bits (163), Expect = 2.040e-10 Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 184 WHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
W EA+ E + +E + W VD K N S +W + D GN K +ARLVARGFSQ++ +D+LE FAP
Sbjct: 849 WEEAMNEEIKVIEKNRTWKLVDKPEK-KNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAP 920
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS) HSP 1 Score: 67.4 bits (163), Expect = 2.050e-10 Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 184 WHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
W EA++ E E +E K W VD K N S +W + GN K +ARLVARGFSQ++ VD+LE FAP
Sbjct: 865 WEEAMKEEIEMIEKNKTWKLVDKPEK-KNVISVKWIYKIKTYANGNHIKHKARLVARGFSQEYGVDYLETFAP 936
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A0J7K016_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K016_LASNI) HSP 1 Score: 66.2 bits (160), Expect = 3.480e-10 Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1
Query: 133 EPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
+ P+ + + + + W EA+ E E L W + KG + RW F D GNV + +ARLVARGF+Q+H +D+ E F+P
Sbjct: 188 QEPISYEEAVQSSEAPKWREAINNEIESLHRNNVWELTQAP-KGQDIIDNRWTFKAKRDANGNVQRYKARLVARGFTQRHGIDYQETFSP 276
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A151SQX0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SQX0_CAJCA) HSP 1 Score: 65.9 bits (159), Expect = 6.840e-10 Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 127 TEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
T P+ F++ K + W +A+ VE + +E W D + KG +W + ++E+G + K +ARLV +G++Q+H VD+ EVFAP
Sbjct: 794 TGSDPILFAEAVK---EEKWKKAMDVEIQAIEKNGTWELTD-LPKGQKTIGVKWVYKTKLNEKGEIDKFKARLVVKGYNQEHGVDYQEVFAP 881
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A438JE14_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JE14_VITVI) HSP 1 Score: 65.5 bits (158), Expect = 9.590e-10 Identity = 31/94 (32.98%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 121 TDTEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
T T +P + ++ + W A+ +E E +E W D + +G +W F ++E G V K +ARL+A+G++QQH +D+ EVFAP
Sbjct: 769 TSTADP----TTFEEAVQSSKWRAAMDLEIEAIERNGTWELTD-LPEGVKKIGVKWVFKTKLNENGKVDKCKARLLAKGYAQQHGIDYTEVFAP 857 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25637.6983.1 >prot_H-paniculata_contig25637.6983.1 ID=prot_H-paniculata_contig25637.6983.1|Name=mRNA_H-paniculata_contig25637.6983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp TSVTRYTGRNEVDRKSEFACLCLCEDFAFACGVDPPLGHVTDTEEPPVRFback to top mRNA from alignment at H-paniculata_contig25637:3189..3590+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25637.6983.1 ID=mRNA_H-paniculata_contig25637.6983.1|Name=mRNA_H-paniculata_contig25637.6983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig25637:3189..3590+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25637:3189..3590+ >mRNA_H-paniculata_contig25637.6983.1 ID=mRNA_H-paniculata_contig25637.6983.1|Name=mRNA_H-paniculata_contig25637.6983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig25637:3189..3590+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |