mRNA_H-paniculata_contig25637.6983.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25637.6983.1
Unique NamemRNA_H-paniculata_contig25637.6983.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 79.0 bits (193), Expect = 1.020e-14
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  139 PVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            PV + +  K      W EA+  E + +E    WT V ++ KG    SA+W F   +DE+GNV + +ARLVARG+SQ+  +D+ E FAP
Sbjct:  174 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAP 261          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 79.0 bits (193), Expect = 1.780e-14
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  139 PVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            PV + +  K      W EA+  E + +E    WT V ++ KG    SA+W F   +DE+GNV + +ARLVARG+SQ+  +D+ E FAP
Sbjct:  549 PVSYEEAIKGPEGEKWKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAP 636          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 73.9 bits (180), Expect = 1.050e-12
Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   43 KSEFACLCLCEDFAFACGVDPPLGHVTDTEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVD--SVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            K E A      +     G DP       ++E P   +  +   +   W EA++VE + L+N   WT VD  + RK     +A+W F    D  GNV+K +ARLVARGF+Q H +D+ + + P
Sbjct:  836 KMEMAMHNAATEMVMLVGQDP-----VASQEDPQMLAQARASPNWPKWEEAIKVELDSLDNTGTWTIVDLPAARKA---ITAKWVFKTKQDADGNVSKYKARLVARGFTQMHGIDYHDTYLP 949          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.170e-11
Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  106 PLGHV-TDTEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFA 399
            P+G   +D E  P+ + D+     K  W  A++ E +G +    +T V  + +G     ++W F+W  +E+G +   +AR+VARGFSQ H +DF   F+
Sbjct:   96 PIGQKPSDVEAVPMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFS 194          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A392MKZ8_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MKZ8_9FABA)

HSP 1 Score: 68.2 bits (165), Expect = 9.390e-11
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  133 EPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            + P  F++++K     +W +A+  E E +EN   W  + ++  G+N    +W F    +E+G + K +ARLV +G+SQ+H VD+ EVFAP
Sbjct:   48 DDPKNFAEVEKFE---VWRKAMDQEMESIENSNTWH-LTTLPDGANAIGVKWIFKTKYNEKGEIEKHKARLVDKGYSQKHGVDYNEVFAP 133          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: Q9ZQE9_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQE9_ARATH)

HSP 1 Score: 67.4 bits (163), Expect = 2.040e-10
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  184 WHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            W EA+  E + +E  + W  VD   K  N  S +W +    D  GN  K +ARLVARGFSQ++ +D+LE FAP
Sbjct:  849 WEEAMNEEIKVIEKNRTWKLVDKPEK-KNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAP 920          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS)

HSP 1 Score: 67.4 bits (163), Expect = 2.050e-10
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  184 WHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            W EA++ E E +E  K W  VD   K  N  S +W +       GN  K +ARLVARGFSQ++ VD+LE FAP
Sbjct:  865 WEEAMKEEIEMIEKNKTWKLVDKPEK-KNVISVKWIYKIKTYANGNHIKHKARLVARGFSQEYGVDYLETFAP 936          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A0J7K016_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K016_LASNI)

HSP 1 Score: 66.2 bits (160), Expect = 3.480e-10
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1
Query:  133 EPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            + P+ + +  + +    W EA+  E E L     W    +  KG +    RW F    D  GNV + +ARLVARGF+Q+H +D+ E F+P
Sbjct:  188 QEPISYEEAVQSSEAPKWREAINNEIESLHRNNVWELTQAP-KGQDIIDNRWTFKAKRDANGNVQRYKARLVARGFTQRHGIDYQETFSP 276          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A151SQX0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SQX0_CAJCA)

HSP 1 Score: 65.9 bits (159), Expect = 6.840e-10
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  127 TEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            T   P+ F++  K   +  W +A+ VE + +E    W   D + KG      +W +   ++E+G + K +ARLV +G++Q+H VD+ EVFAP
Sbjct:  794 TGSDPILFAEAVK---EEKWKKAMDVEIQAIEKNGTWELTD-LPKGQKTIGVKWVYKTKLNEKGEIDKFKARLVVKGYNQEHGVDYQEVFAP 881          
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Match: A0A438JE14_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JE14_VITVI)

HSP 1 Score: 65.5 bits (158), Expect = 9.590e-10
Identity = 31/94 (32.98%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  121 TDTEEPPVRFSDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW*IDEQGNVTKPEARLVARGFSQQHNVDFLEVFAP 402
            T T +P    +  ++    + W  A+ +E E +E    W   D + +G      +W F   ++E G V K +ARL+A+G++QQH +D+ EVFAP
Sbjct:  769 TSTADP----TTFEEAVQSSKWRAAMDLEIEAIERNGTWELTD-LPEGVKKIGVKWVFKTKLNENGKVDKCKARLLAKGYAQQHGIDYTEVFAP 857          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25637.6983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI1.020e-1440.91Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0J7KM48_LASNI1.780e-1440.91Integrase catalytic domain-containing protein n=2 ... [more]
A0A5C3EBA0_9BASI1.050e-1233.61Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
A0A6H5JNP9_9PHAE9.170e-1132.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392MKZ8_9FABA9.390e-1135.56Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
Q9ZQE9_ARATH2.040e-1043.84Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A6D2HJM6_9BRAS2.050e-1046.58Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A0J7K016_LASNI3.480e-1034.44Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A151SQX0_CAJCA6.840e-1033.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JE14_VITVI9.590e-1032.98Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25637contigH-paniculata_contig25637:3189..3590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.0020876-CDS-H-paniculata_contig25637:3188..34911622929759.0020876-CDS-H-paniculata_contig25637:3188..3491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25637 3189..3491 +
1691480998.6701198-CDS-H-paniculata_contig25637:3188..34911691480998.6701198-CDS-H-paniculata_contig25637:3188..3491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25637 3189..3491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.0195339-UTR-H-paniculata_contig25637:3491..35901622929759.0195339-UTR-H-paniculata_contig25637:3491..3590Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25637 3492..3590 +
1691480998.679998-UTR-H-paniculata_contig25637:3491..35901691480998.679998-UTR-H-paniculata_contig25637:3491..3590Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25637 3492..3590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25637.6983.1prot_H-paniculata_contig25637.6983.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25637 3189..3491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25637.6983.1

>prot_H-paniculata_contig25637.6983.1 ID=prot_H-paniculata_contig25637.6983.1|Name=mRNA_H-paniculata_contig25637.6983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
TSVTRYTGRNEVDRKSEFACLCLCEDFAFACGVDPPLGHVTDTEEPPVRF
SDIKKLTHKTLWHEAVRVEFEGLENLKAWTCVDSVRKGSNNFSARWAFAW
*
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mRNA from alignment at H-paniculata_contig25637:3189..3590+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25637.6983.1 ID=mRNA_H-paniculata_contig25637.6983.1|Name=mRNA_H-paniculata_contig25637.6983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig25637:3189..3590+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCGGTTACCCGATATACTGGTAGGAATGAAGTAGACCGTAAGAGTGA GTTTGCGTGTTTGTGTTTGTGTGAAGATTTTGCTTTCGCATGTGGTGTTG ACCCGCCGCTAGGTCATGTTACTGACACAGAGGAGCCCCCTGTTCGTTTT TCAGACATCAAGAAGCTGACACATAAAACGTTGTGGCATGAGGCAGTCAG AGTAGAGTTCGAGGGCTTGGAAAATCTCAAAGCTTGGACTTGTGTAGACA GTGTGCGGAAAGGTTCCAATAATTTCAGTGCGAGATGGGCATTTGCATGG TAAATTGATGAGCAGGGGAACGTTACAAAGCCAGAGGCAAGGCTTGTAGC TCGAGGGTTTAGCCAGCAACACAACGTTGATTTTCTCGAAGTGTTTGCTC CT
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Coding sequence (CDS) from alignment at H-paniculata_contig25637:3189..3590+

>mRNA_H-paniculata_contig25637.6983.1 ID=mRNA_H-paniculata_contig25637.6983.1|Name=mRNA_H-paniculata_contig25637.6983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig25637:3189..3590+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCGGTTACCCGATATACTGGTAGGAATGAAGTAGACCGTAAGAGTGA
GTTTGCGTGTTTGTGTTTGTGTGAAGATTTTGCTTTCGCATGTGGTGTTG
ACCCGCCGCTAGGTCATGTTACTGACACAGAGGAGCCCCCTGTTCGTTTT
TCAGACATCAAGAAGCTGACACATAAAACGTTGTGGCATGAGGCAGTCAG
AGTAGAGTTCGAGGGCTTGGAAAATCTCAAAGCTTGGACTTGTGTAGACA
GTGTGCGGAAAGGTTCCAATAATTTCAGTGCGAGATGGGCATTTGCATGG
TAAACGTCGGTTACCCGATATACTGGTAGGAATGAAGTAGACCGTAAGAG
TGAGTTTGCGTGTTTGTGTTTGTGTGAAGATTTTGCTTTCGCATGTGGTG
TTGACCCGCCGCTAGGTCATGTTACTGACACAGAGGAGCCCCCTGTTCGT
TTTTCAGACATCAAGAAGCTGACACATAAAACGTTGTGGCATGAGGCAGT
CAGAGTAGAGTTCGAGGGCTTGGAAAATCTCAAAGCTTGGACTTGTGTAG
ACAGTGTGCGGAAAGGTTCCAATAATTTCAGTGCGAGATGGGCATTTGCA
TGGTAA
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