mRNA_H-paniculata_contig2561.6971.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2561.6971.1
Unique NamemRNA_H-paniculata_contig2561.6971.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A847F6D1_9DELT (PNPLA domain-containing protein n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A847F6D1_9DELT)

HSP 1 Score: 143 bits (360), Expect = 3.140e-36
Identity = 98/243 (40.33%), Postives = 135/243 (55.56%), Query Frame = 1 
Query:  214 PTADIVLSAGNCAFAHHCGFLEGVEQALSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKTFRSTAARDWTGLSACTRWRPGRRVLVHCVED--GRGLKGDISGLGDWVQDPRIVVIRSPRSRSS-FLRG--LVEYEQEHMVALKRMLQVV 927
            P  D++LS+G   FA H GFL GVE+A      GAVLGTSSGA++G L+AAG+S   I  +IE+  +    L       RNP RGLFSL  LV  L+ ++P  F++L  PFAV V D+ G   L+ SGPLP+A+AAS A   +F+P+ + G+        D  G+ A  RWR G   L+H +    GR L G + G           VI SPRSR++ F  G    E E+ + +  +R+  V+
Sbjct:    5 PRVDLILSSGFLGFARHLGFLRGVEEAGLAP--GAVLGTSSGAVIGGLYAAGHSVNAIEAMIEEFRRPILRLGFA----RNPLRGLFSLGRLVEFLEAHVPARFDQLELPFAVGVTDARGAHRLITSGPLPQAIAASSAIPRVFQPIAVDGELCVDGGVCDRVGVRAYDRWRDGHDPLIHRILPSLGRELPGALLGRR---------VIESPRSRANLFSLGNFRAEAEESYRITAERLQTVL 232
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A2E7MCG6_9DELT (PNPLA domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7MCG6_9DELT)

HSP 1 Score: 142 bits (359), Expect = 4.260e-36
Identity = 97/213 (45.54%), Postives = 119/213 (55.87%), Query Frame = 1 
Query:  223 DIVLSAGNCAFAHHCGFLEGVEQ-ALSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKTFRSTAARDWTGLSACTRWRPGRRVLVHCVEDGRGLKGDISGLGDWVQDPRIVVIRSPRSRSS 858
            D+VLS+G  AFA HCGFL GVEQ  L VD V    GTSSGALVGALWAAGY A+ IA  +  +      LA+++ P   PWRGLFSL  L+  L+++LP  F  L  PF V V   D   +LL  GPLPEA+AAS A   +F PV I G  +R     D  GL     +R  R  +VH VE   G         D      + V+R+PRS +S
Sbjct:    9 DLVLSSGFLAFARHCGFLAGVEQHRLPVDGV---CGTSSGALVGALWAAGYPAEAIAERLSADRP----LAIMRPPLA-PWRGLFSLGGLITRLRDWLPSDFAGLERPFGVGVMGPDRCSTLLTEGPLPEAIAASCAVPGLFAPVRIGGTWYRDGGVVDRIGLQVWRSYRGERNFVVHQVERSAGK--------DTPVPVDVAVVRTPRSGAS 205
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A2E7ZVM8_9DELT (PNPLA domain-containing protein n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E7ZVM8_9DELT)

HSP 1 Score: 140 bits (353), Expect = 6.530e-35
Identity = 88/213 (41.31%), Postives = 119/213 (55.87%), Query Frame = 1 
Query:  223 DIVLSAGNCAFAHHCGFLEGVEQALSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKTFRSTAARDWTGLSACTRWRPGRRVLVHCVEDGRGLKGDISGLGDWVQDPRIVVIRSPRSRSSF 861
            D+VLS+G  AFA H G L  ++       + AV+GTSSGALVGALWAAG+ A  I + +++          + +P   PWRGL SL  LV  L++ LPP  E+L  PFAV V D  G+  LL  G L  AVAAS A  +IF  V +QG+ F    A D   +    RWRPGR+ + H V+   G   ++S  G       ++ I++PRS +SF
Sbjct:   32 DLVLSSGFLAFARHIGVLRALQN--RQVEIEAVVGTSSGALVGALWAAGHDADQICQWLQERRPIS-----LMRPHLRPWRGLLSLQPLVQFLRQRLPPNVEDLPLPFAVGVIDLQGQHRLLTEGDLACAVAASCAMPWIFASVEVQGERFEDGGAADRLAVEPWRRWRPGRQAIAHQVQRTAGKDLNVSWQG-------VMRIQTPRSGASF 230
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A5J4XLA5_9CHLO (Patatin n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XLA5_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 8.720e-33
Identity = 98/253 (38.74%), Postives = 136/253 (53.75%), Query Frame = 1 
Query:  214 PTADIVLSAGNCAFAHHCGFLEGVEQALSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRG-LFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKTFRSTAARDWTGLSACTRWRPGRR-----------VLVHCVEDGRGLKG--DISGLGDWVQDPRIVVIRSPRSRSSFLRGLVEYEQEHMVALKRMLQVVA 930
            P  D+VLS+G  AFA H GFL+ VE+  S   V +++GTSSGA+ G+L+AAGYSA+ +A  + + +        + +P   PW+G + SL  +V  L++ LP TFEEL  P AV V D  GK  L+RSGPLPEAVAAS A   +F  V I G +            +A   WR  RR            LVH V+    L G  D++G G+     +I V RSP+S ++F   L  +E++   A  R    +A
Sbjct:   63 PKYDLVLSSGFLAFASHSGFLKAVEE--SKVPVASIVGTSSGAISGSLYAAGYSAEQVAAELARVAP-----IQLLRPNMQPWKGGVLSLDPVVERLRQLLPATFEELPVPLAVGVVDQTGKHMLIRSGPLPEAVAASAAIPMVFAAVDIPGASAGPHIDGGKVDRTALKAWRDARRESMQWGKQPPPALVHLVDRSSQLSGADDVAGTGE----KKITVCRSPKSGANFF-ALGNFEEQVSAAYARAQPAIA 303
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BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A2J7ZUI3_9CHLO (Patatin n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZUI3_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 1.090e-31
Identity = 96/239 (40.17%), Postives = 133/239 (55.65%), Query Frame = 1 
Query:  223 DIVLSAGNCAFAHHCGFLEGVEQA-LSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRG-LFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKT----FRSTAARDWTGLSACTRWRPGRRV------------------LVHCVEDGRGLKG--DISGLGDWVQDPRIVVIRSPRSRSSF 861
            D+VLS+G  AFA H GFL  VE+A LSV   G V+GTS+GAL GAL+ AGY+ + +A+ + + +      A + +P   PWRG   SL  +V  L++ LPP FE+L   FAV V  +DG+  L+ SGPLPEAVAAS A  F+F+ V + G++    F+     D  GL A   WR  RRV                  LVH +E      G  D++  G+      I+V++SPRS ++F
Sbjct:   12 DLVLSSGFLAFASHAGFLLAVEEAGLSV---GGVMGTSAGALTGALYCAGYTPRQVAKHLSENTP-----ATLLRPSLTPWRGGALSLEGVVARLRDLLPPRFEDLSREFAVGVVTADGRHLLIDSGPLPEAVAASAAIPFVFQAVDVPGRSRHGPFKDGGVVDRVGLKA---WRDRRRVQMKHHVFNGSASPRPPTCLVHVIERSSPFSGSDDMTATGE----SHILVVKSPRSGANF 235
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A8J4F2A3_9CHLO (Patatin n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F2A3_9CHLO)

HSP 1 Score: 132 bits (333), Expect = 4.980e-31
Identity = 103/259 (39.77%), Postives = 139/259 (53.67%), Query Frame = 1 
Query:  205 PSPPTADIVLSAGNCAFAHHCGFLEGVEQALSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVVL-LQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKT-----FRSTAARDWTGLSACTRWRPGRRV------------------LVHCVEDGRGLKG--DISGLGDWVQDPRIVVIRSPRSRSSFLRGLVEYEQEHMVA 903
            PS    D+VLS+G  AFA H GFL+ VE+ L +  VG V+GTS+GAL G+L+ AGY+ + +A  +  ++      A + +P   PWRG    LD V+  L++ LPPTFE+L   FAV V  SDG+  L+ SGPLPEAVAAS A  F+F+ V + G       F+     D  GL A   WR  RR                   LVH ++      G  D + +G+      IVVI+SPRS ++F   L  +E EHM A
Sbjct:   60 PSMDACDLVLSSGFLAFAGHAGFLQAVEE-LGLP-VGGVMGTSAGALAGSLFCAGYTPRQVASHLSDQTP-----ASLLRPSLAPWRGGALSLDRVISRLKDLLPPTFEDLHREFAVGVVTSDGRHLLIDSGPLPEAVAASAAIPFVFQAVDVPGHVARHGPFKDGGVVDRVGLKA---WRDRRRAQMKSAKGPSSASRPPPPCLVHVIDRSSPFSGFDDTTAMGE----SSIVVIKSPRSGANFF-DLGSFE-EHMDA 302
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A8J4GFF0_9CHLO (Patatin n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GFF0_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 3.920e-30
Identity = 100/255 (39.22%), Postives = 139/255 (54.51%), Query Frame = 1 
Query:  223 DIVLSAGNCAFAHHCGFLEGVEQALSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVV-LLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKT-----FRSTAARDWTGLSACTRWRPGRRV------------------LVHCVEDGRGLKG--DISGLGDWVQDPRIVVIRSPRSRSSFLRGLVEYEQEHMVALK 909
            D+VLS+G  AFA H GFL+ VE+ L +  VG V+GTS+GAL G+L+ AGY+ + +A+ +  ++      A + +P   PWRG    LD V+  L++ LPPTFE+L   FAV V  SDG+  L+ SGPLPEAVAAS A  F+F+ V + G       F+     D  GL A   WR  RR                   LVH ++      G  D + +G+      I+VI+SPRS ++F   L  +E EHM A +
Sbjct:   62 DLVLSSGFLAFAGHAGFLQAVEE-LGLP-VGGVMGTSAGALAGSLFCAGYTPRQVAKHLSDQTP-----ASLLRPSLAPWRGGALSLDQVINRLKDLLPPTFEDLHREFAVGVVTSDGQHLLIDSGPLPEAVAASAAIPFVFQAVDVPGHVSRHGPFKDGGVVDRVGLKA---WRDRRRAQIKSGKGPSSVARPPPPCLVHVIDRSSPFSGFDDTNAMGE----SSIMVIKSPRSGANFF-DLGSFE-EHMDAAR 300
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A7S3K4T2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4T2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.180e-29
Identity = 94/258 (36.43%), Postives = 137/258 (53.10%), Query Frame = 1 
Query:  223 DIVLSAGNCAFAHHCGFLEGVEQALSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKTFRSTAARDWTGLSACTRWRPGRRVLVHCVEDGRGLKGDISGL--GDWVQDPR-IVVIRSPRSRSSFLRGLVEYEQEHMVALKRMLQVVAPEVIHQLPSLYPDEAYAEY 987
            DIV+S+G C F+ H GF++ +E+     +  A++GTS GAL+G + AAGYSA DI+  + Q+            PRR    G+ SL  ++  L + LPP FE+L  P A+ V  +  K  LL SG LP AVAAS A   +F PV I G TF   A  D T L A   WR G  V   C      +K D + +   D +Q+    V++R+PR+RS+ L  L  + QE  +A +R L  ++      + SLY ++   ++
Sbjct:   61 DIVMSSGFCCFSSHVGFVQALEE--KSVKPSAIVGTSCGALIGGMLAAGYSANDISSELSQKLPIDELKLNKNLPRRG---GVLSLDGVIKRLAKLLPPKFEDLPIPLAIGVCQNFRKTQLLTSGDLPAAVAASCAVPGLFSPVQISGHTFSDAAGYDRTFLRAWRTWR-GDNVFGIC----NLVKNDGAPIFPHDGIQNNHNFVLVRTPRTRSATLWNLGNFHQESDLAKQRTLSQLSE--FRHISSLYSEQEETDF 306
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A4P5W348_9DELT (PNPLA domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5W348_9DELT)

HSP 1 Score: 120 bits (301), Expect = 9.010e-28
Identity = 89/249 (35.74%), Postives = 124/249 (49.80%), Query Frame = 1 
Query:  196 ELRPSPPTADIVLSAGNCAFAHHCGFLEGVEQA-LSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKTFRSTAARDWTGLSACTRWRPGRRVLVHCVEDGRGLKGDISGLGDWVQDPRIVVIRSPRSRSSFLRGLVEYEQEHMVALKRMLQVVAPEV 939
            E+ P P   D++LS+G  AFA H G L  +E A + +D   AV+GTSSGAL+GALWAAG  A +IA  + ++     +     +PR   W G  SL  L+  L + LP TF +L  PFA  V      P L   G LP AV AS A   +F P+ I+G ++R     D         WR  R V+ H V+   G   ++   G       + V+RSP+S +SF   L   E+   V+ +    V+  EV
Sbjct:    5 EVTPGPGAHDLLLSSGFLAFARHVGALAAIEDAGVPID---AVVGTSSGALIGALWAAGMPAAEIAAALAEKPP---YAFFSMQPRL--WEGALSLAPLLRWLTDRLPATFADLPRPFAAGVIGPGRVPRLFPEGNLPRAVVASCAIPGVFLPIDIEGVSYRDGGVADRLMFEPWVAWRGRRPVIAHVVDRSAGHDPNVDLAG-------VTVLRSPKSGASFF-SLGNVEEGVAVSRRAAAGVLGAEV 237
[Close]
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Match: A0A2D4SNF7_9DELT (PNPLA domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D4SNF7_9DELT)

HSP 1 Score: 118 bits (296), Expect = 6.370e-27
Identity = 85/216 (39.35%), Postives = 114/216 (52.78%), Query Frame = 1 
Query:  223 DIVLSAGNCAFAHHCGFLEGVEQA-LSVDRVGAVLGTSSGALVGALWAAGYSAKDIARIIEQESKEGGWLAVVKKPRRNP--WRGLFSLLDLVVLLQEYLPPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQGKTFRSTAARDWTGLSACTRWRPGRRVLVHCVEDGRGLKGDISGLGDWVQDPRIVVIRSPRSRSSF 861
            D++LS+G  AFA H GFL  +E+A + VD V    GTSSGALVGALW +G S ++I    E+E   G  ++++     NP  WRGL SL  +V LLQ+      EE   PF V V  SD  P +  SGPL + V AS +  ++F  + I G  +    A D  G       R  ++ +VH VE  RG K +    G        +V+RSPRS  SF
Sbjct:   29 DVILSSGFLAFASHIGFLRALEEANIPVDGV---CGTSSGALVGALWVSGLSTQEI----EKEIFRGRPISLLSL---NPYVWRGLLSLYKVVALLQDIAVDRLEEGSIPFGVGVCTSDWTPQIKTSGPLADFVVASCSIPYLFSSIYIDGVRYCDGGAGDRIGAKGWKEIRNPQQSMVHLVERSRGAKKEEGLEGS-------IVVRSPRSGVSF 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2561.6971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847F6D1_9DELT3.140e-3640.33PNPLA domain-containing protein n=1 Tax=Sandaracin... [more]
A0A2E7MCG6_9DELT4.260e-3645.54PNPLA domain-containing protein n=1 Tax=Deltaprote... [more]
A0A2E7ZVM8_9DELT6.530e-3541.31PNPLA domain-containing protein n=2 Tax=Myxococcal... [more]
A0A5J4XLA5_9CHLO8.720e-3338.74Patatin n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 R... [more]
A0A2J7ZUI3_9CHLO1.090e-3140.17Patatin n=1 Tax=Tetrabaena socialis TaxID=47790 Re... [more]
A0A8J4F2A3_9CHLO4.980e-3139.77Patatin n=4 Tax=Volvox africanus TaxID=51714 RepID... [more]
A0A8J4GFF0_9CHLO3.920e-3039.22Patatin n=1 Tax=Volvox reticuliferus TaxID=1737510... [more]
A0A7S3K4T2_9STRA2.180e-2936.43Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A4P5W348_9DELT9.010e-2835.74PNPLA domain-containing protein n=1 Tax=Deltaprote... [more]
A0A2D4SNF7_9DELT6.370e-2739.35PNPLA domain-containing protein n=1 Tax=Deltaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2561contigH-paniculata_contig2561:138..7142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score135.6
Seed ortholog evalue4.1e-29
Seed eggNOG ortholog248742.XP_005645572.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.lipolytic acyl hydrolase (LAH)
EggNOG OGs2SMEN@2759,34KDX@3041,37Y6Y@33090,COG1752@1
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size1406
Cds size948
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.037697-UTR-H-paniculata_contig2561:137..5321622929757.037697-UTR-H-paniculata_contig2561:137..532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 138..532 -
1691480997.9407244-UTR-H-paniculata_contig2561:137..5321691480997.9407244-UTR-H-paniculata_contig2561:137..532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 138..532 -
1622929757.1221619-UTR-H-paniculata_contig2561:7079..71421622929757.1221619-UTR-H-paniculata_contig2561:7079..7142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 7080..7142 -
1691480997.9884608-UTR-H-paniculata_contig2561:7079..71421691480997.9884608-UTR-H-paniculata_contig2561:7079..7142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2561 7080..7142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.050177-CDS-H-paniculata_contig2561:532..7301622929757.050177-CDS-H-paniculata_contig2561:532..730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 533..730 -
1691480997.9498317-CDS-H-paniculata_contig2561:532..7301691480997.9498317-CDS-H-paniculata_contig2561:532..730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 533..730 -
1622929757.0651584-CDS-H-paniculata_contig2561:1359..15911622929757.0651584-CDS-H-paniculata_contig2561:1359..1591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 1360..1591 -
1691480997.9577072-CDS-H-paniculata_contig2561:1359..15911691480997.9577072-CDS-H-paniculata_contig2561:1359..1591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 1360..1591 -
1622929757.080418-CDS-H-paniculata_contig2561:1764..19231622929757.080418-CDS-H-paniculata_contig2561:1764..1923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 1765..1923 -
1691480997.9655871-CDS-H-paniculata_contig2561:1764..19231691480997.9655871-CDS-H-paniculata_contig2561:1764..1923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 1765..1923 -
1622929757.0952678-CDS-H-paniculata_contig2561:4875..49481622929757.0952678-CDS-H-paniculata_contig2561:4875..4948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 4876..4948 -
1691480997.9733274-CDS-H-paniculata_contig2561:4875..49481691480997.9733274-CDS-H-paniculata_contig2561:4875..4948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 4876..4948 -
1622929757.1106222-CDS-H-paniculata_contig2561:6793..70791622929757.1106222-CDS-H-paniculata_contig2561:6793..7079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 6794..7079 -
1691480997.980688-CDS-H-paniculata_contig2561:6793..70791691480997.980688-CDS-H-paniculata_contig2561:6793..7079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 6794..7079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2561.6971.1prot_H-paniculata_contig2561.6971.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2561 533..7079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2561.6971.1

>prot_H-paniculata_contig2561.6971.1 ID=prot_H-paniculata_contig2561.6971.1|Name=mRNA_H-paniculata_contig2561.6971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
MHFTSIVLIAIVQLYSSFSYAFCTYTSRWSSSHTLYSSHTLHTEELRPSP
PTADIVLSAGNCAFAHHCGFLEGVEQALSVDRVGAVLGTSSGALVGALWA
AGYSAKDIARIIEQESKEGGWLAVVKKPRRNPWRGLFSLLDLVVLLQEYL
PPTFEELLFPFAVQVQDSDGKPSLLRSGPLPEAVAASLAAAFIFKPVVIQ
GKTFRSTAARDWTGLSACTRWRPGRRVLVHCVEDGRGLKGDISGLGDWVQ
DPRIVVIRSPRSRSSFLRGLVEYEQEHMVALKRMLQVVAPEVIHQLPSLY
PDEAYAEYLFASLDA*
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mRNA from alignment at H-paniculata_contig2561:138..7142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2561.6971.1 ID=mRNA_H-paniculata_contig2561.6971.1|Name=mRNA_H-paniculata_contig2561.6971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7005bp|location=Sequence derived from alignment at H-paniculata_contig2561:138..7142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGCGAGAGGAGAGGGGAGAGCTGATGAGCTAGTCTCGCCACAGTGGC
TATTTTTGCCATTATGCATTTTACGTCAATCGTCCTCATCGCGATTGTCC
AACTCTATAGTTCCTTCTCCTATGCCTTTTGTACATACACAAGCCGTTGG
AGCTCAAGTCACACCCTCTACAGCAGCCACACACTGCACACAGAAGAACT
GCGGCCCTCCCCACCTACCGCGGACATTGTCTTATCTGCAGGCAACTGTG
CATTTGCCCATCACTGCGGATTTTTGGAGGGTGTGGAACAAGCCCTCTCC
GTGGACAGAGTCGGTGCTGTACTAGGGACCTCGTCTGGCGCCTTAGTAGG
TAAAATATCAATTTGTGAAGATGAAGGTCACCCATACCTGCGGCAGGTTG
TGTCCATCGCTGAAGATATTCGTGTTTTCAACAGCATGCGAGGTTTGCGT
CACCACGCAGCAGTGTACACACACACAAACACTCAAAAACATATCTCCAT
TCACTGACCTCTCTCTAAATTTACCTACACAGGCAGGTACATGCCAGGAA
AGTCCTGAGAGTGTCAGCATTCGTACAACGAGTGTCGTATTTCAACTGAA
TACAAACGGGAAATGACGCCGCCCTTCCCTCCCCATTGCAATGTCAATGT
CAGGCAATACAACAACACACAGCAATACAACATACGAACTTTCACATCAA
TTTTCCCACGAAATTTTTTCGAACTATGGAACGAATTTTTGCATACGTGC
TCCTTACTTAATTCCCGAGATCATCGATGTTTGACCTTTTTTAGTTTGGC
CGTTGATCACCAGTTTGGGGGGTCTCGAGGTGATTTCGGATTCTGGGATC
CCGGAAAACCAGTGGAAAAAAGCGAAACTAAAGATGGCCAAACACAGGTC
ACCTCGGGAAATGAGTAAGGAACACGTAGGCAAAAATTCGTTCCATAGTT
CGAAAAAATTTCGTGGGAAAATGGGCAAACGTAGATCGGACCCGTTACGG
GGTACCGATTCTTCTGACATACCAGATTTTCGAATGGGATTCGGGTGAGT
ACGTAACGGCGGGCTTGATGTCACAATGGCAGCCCCTTTGGGTTATATTT
ATGTGCAGGAGACATCAATGTCGGACTGGCGAATGCCGGGCCCGTTTTTG
ACTGAAATGCGGCGCAACTACGCGTTGACGTCAGTTTTGTGGAGAATTTG
CCTCGTTGTTGATTATATACATACATTTAGCCCTCTGGTTCAGACGCCGC
TAACAAGGAACCACGCATACAATGTGCCAATAAGGCCCCGCCTTTATCTT
TTCCATGTTCTGAGGATCATGTAGGTACTTTATTTGTCGAAATTAGACTA
TTGTGGGTCGAGAATGCATTGGAACACACTTTCGGTTTTTCTTGCCTGAA
CCAGCTCGTATATCCGAATGTCCTATATGTCAGTCGTCGTCGATCCTAGC
CACGAGGCACTGTAGAGCAGGTGGCGTTGTTACCTCGAGCACACCCGACT
GTCACCGAGTTCGCCGGGAAAAGGCGGTTGGAGTGTGCGTTTACTGCAAC
AACAAAAATTGGCACCGACTGTCAGATGGTCGACGTTCCAGCGACCTCGC
AAAAGTTATAGCGCATTGGAGAGTTATTCAGTGCTGCTCGGGATATAGTC
GGTCGGCCTCGCGACGGTTGCAGTGTGCATTAGAATCTTACAGACATCGT
TACTTCGGACATAGGTCACTCGTGGATTCGCCAGCCGCAGGTGGGTTGGA
TAATGACAGGGGCGCTGTGTGTAAAAAAAGAGCGGCCCCCAGCAATCTTT
ATTAGCGAAAGAAACCTTTGGGTTAGTCCTGAAAACAACTCCGTCCAGAC
AGCAGACACGAGAAACATGAATAGCCCGCCCATGTTGTCACTGGTATCGG
GGTGAGATCACCCCCGGTGTGGGAGCGTGTCGTTTTTTTTGTTGTAGCGC
AAGAAATATCAAGTCGCGTGTTCCACAAAAATACAATATGCTGATTTGCA
AGTTCGAGTGTACACTTGGTGGCTTATAGACCCGCGTGAATGCAACTTCC
CCAGAGAATTATCCACAGTGAGCATGCTGCTGATCACCTGCCTTGCCACA
GTTGATGGCGGGCATTTCTCGGTCGATGGCGAGGATGCCTTTGCGCGTTC
ACCAACAGCATGCCGCCTCGTCCCCGTTCCTGCAATGCATACAGGGGCGT
TGTGGGCAGCAGGATACTCCGCAAAGGATATAGCTCGGATAATCGAACAA
GAGAGCAAGGAAGGCGGGTAAGCCTTGTTGGTCTTTGCCGTGAGAAAGGG
TGGTAGCTACTACTGTAGGCAATTATCGACTTGATGGGTTGATTAGGTTG
ACATAAGTCCCTCCTCTATGTTAACTTGAGATATGATGTAAGTAAGTTTC
GGGAGGTTGGACGTTGTTGGCACGTATATTCCCGAAGGAAGAGGACCACT
CGAAACGTGTACCATCTGTTCGGGGGTGGATATCCGTAGCCGTTAACAGA
AGGTACCTGATAACAATATGGATACAACTTTCGTGACACTCCTGTAGCTT
CTCAAATGCATAGAACTCGTTTTACGTTTCTTGAATGTATTCGGTAAGAC
TCGGACGCGTTATTTTCGCCCAAACGGATTTCGTATATGTGCCCACCACT
CAATAAACCGAACCATGCGTGAGTAAACAACTCTGAACTTGAATCAGCGA
ATCGGTTAAAATCCGCTGCTAACGGTGAGTCGGCGCCCGCTCGTGGCAAA
AGTGGATGTTATACGGCGACGTTGTGCAATAGCAGCACAAAATAGAGATG
CCAGACACCAACTCAAATGCTTGGAGTCTTGATCATGATCGTGCCGAGAC
TCGCTAGTCGATCGCCGTAGGTATCGCAGCAGAACGTCCTCAGGAAGGTG
AAGTTTTACGCAATACTGCAGTGCATCTACAGTTTCTGGCCACCCCGACC
TCACAAAACATGTCTGTGTGCTCATCCACAATATTTTTTTTCCTTTTGAT
TTCTCCTGTTACTCGGCCGTTTTATCCATATCGTCAATTCAGTCAGCTAT
AAACAAAAAAGTCCAGTTTCTTTCCATTTTTAGCTTCTCGTGCGCCTGAC
GAAACAGGCCAAACAGCTCCAATTTTGACCACATCTTTGAGCGGACATGT
GCCTTACCCTATATAAAAAATGGAGCTAAGGTTTTTGCAACGATCCTTTG
TGTGCTAATTGACGAAAACTAGAAAAAAACATTATGTACAAAAGTTAATC
TACAATAGGTCGTGCTCCTCGCGATTAGAGCTGTCAACCAAATTCCGAAT
ATAGGGTGATTTCTTCTCCGGGTTAGTGCATGATCGGCTTTCTCACCAAG
CAGAGGTCGTGGCATATCCCAGAGCGAGTGCAACTGTCTGTCTATCTTAT
CTAAGATGTCCGCTGATGAATTGCAAGGCTTTTCACATGACTGGCGTTAC
ACTTGTCTTTTACATTTGACCAGATCCACCAACCGTTTCCTGGTTGGTCA
TTTCATTTTTATTTGGGGCCGTGCCAGTCATGTCAATCATTGCCGGTCAT
GTGTACATTATGTACCGATTTTTTATGGGCAGCGGCACGGGTACATGTAG
ATTTCTGACCGTCATTGGTCGTGACAAGCAATTTCAGCGCACCTTTCGAG
CTATACTTTCTCCAAGTCATTTACTTCTCGGAGCGCAATTCTGGTGCCAC
ATGTTTTGTCTATTTCTGTATATATTTTTCCAAGTGTTGAAAAAAAAAAT
GGCTTAGGAGACTTCCTAAACATATCTGAGCCGTTTTCAAGATTCACGCA
GGTTTCCGGCCACGCGACTGCCTGACAATTTGCAGACTTAAGAACCAGTA
CAACTTGCGCGATTTGCGAGTTAAACTACTACTTCAGTAACTCGTCGCAC
GGAGCCCCGTAGATCTTCCACCTCAAGTCCGATCTAGCCACAAGTTGCGT
TCCGCTTTTTAGGCAACCAGCAGAAGATGGTCTCTTCAAAATGTGCGTCA
GCCCTTGGATCTGAGTGTCCTTCGACGTGTGCAAAGTCGATAACACCCTC
GCAGCACCCACGCCACCTTGCCATACCCCCGGACTGGTAGTAGCACATAT
TTCGTTGACAAAGTCACAACATGGCTTACGAACAAGGCTCCGCGAGGGCG
GGTAGTGGTGAATCAACGCAGGATCTGCCCATGGCGCAACCGGCGCAGCC
GCAGATACCAGCGGCATATCAGGCAGCATCACCGGGCTACCTCCCTCCGG
CAGCTTCAGTAGTGGAAAGCTGAAAGCTAAGAGAGGTTACGCAATACGTG
GTCGTTGGTGTCCCCAACAGCCGCAAGCTCAGGCTCAAGGCGGTCTGTCC
CTGCTTAGCCCACGTCAAAGTCTTCGACCCTCCTGCGCAATATTTATACA
TAGTAAATACGGTAGGTACATGCTCTACATTACCAGCGTCTTTTTACGCC
TTTTCACATATTACCAACATTTCATACATTTGTATTCACGACCAGCATTT
TACAGATGATGACTATTTTTACGTATGACCGGAAACGTACATGTATCTTT
GGCACATGACCAGGTCTTCCAAGCGGTTCACGATTGGTCGTGTGAAAATT
GGCCCAGTTCGCAATCGGTCATGTGAGATTTCCAACTTTTCCGGCTGGTT
CGTGGTTGGTCATGCGAGAGAGAATTTTACCCGGGTCGCGATTGGTCATG
TGAAAAAATGTCGGTTTAAAAAAAATATTTAAACAGCCTTGGTGTATTTG
AGCAAGGTGATTTTGGACTCTTTTCCCCTTCTGACAAACCCGCCCTACAC
TGGCTCCATTTCCACCATTCATCTATTTTTTCGAGCGCAAGGAGTGGCAC
ACATCGGTCTTTTCTTTCGTGCGATATTCGATGCTTGTTTTGTGCTCTAA
CTTGTTGCTATTCCCACATATGTACAACTATTGCGTGGCATGCCTTCGGT
GGCCGTTGATGGAGATATTCACCTCTAGGCATATGTATGTACAAGAGGAA
CCACGCAACCAACTACTCTGCTTGATGTGTTTACTTGCCTATATACGAAC
CTTACGCGCCCAAACCTCTTTGATTTTTTGTAGACCCGCCATGAGATATT
TGATCCTATCACATGAAGTGTCGACGGTCGCTTTCCTACAACACGCTTTG
CTCTGGCTCCTCGACAATCGGGTTGCTGCTCTTCTGAAAAACGAACACTG
GATGTCAATTGCTGAACAGGTGGCTCGCTGTGGTGAAGAAACCTCGTCGG
AATCCATGGAGAGGATTGTTTTCGCTCTTGGATCTAGTTGTGCTACTGCA
AGAGTACTTGCCTCCAACGTTTGAAGAACTACTATTCCCTTTCGCCGTTC
AGGTGCAAGACTCAGACGGAAAACCAAGGTAAGGTCCTTGTCTGCGGTGC
TATTTTTTCGATGCTGATGGCTATCGTGGCACCAAAAACCGACCTGGGTT
TGATTTCTGGCCCTGGAAAAGTGTCCTGTACAAGCGCTTGTGTCTCACTG
TTTAGCCATACCTTGAATATATTGTCCACTTCGTTTCATTTCTCGCCTCA
GTCTACTGCGGTCTGGGCCTCTTCCTGAAGCCGTAGCAGCGTCCTTGGCT
GCTGCTTTTATCTTCAAACCCGTTGTGATACAAGGGAAGACATTTCGTTC
GACTGCTGCTCGAGATTGGACGGGTTTGTCGGCATGCACCAGGTGGCGTC
CAGGACGACGGGTTCTTGTGCACTGTGTGGAAGATGGCCGTGGCTTGAAA
GGAGATATAAGTGGACTGGGAGATTGGGTACAGGTGAACGAACCTACATT
ATAAACTCACTATGCTGTGTGAGGGTCGGCTGTATACTTTCTCCAGATTT
GTACGGAGTACCCTATCCTTGCGTTAAGTAGTCAATGTTGAGTACAGATA
TCTCTAAAATACTTTTCTACGAGACCTATGTACTTTTCGTCAGCTGGGTG
GCATGAACATTAGACACTCGAATCATCACGCCTACAGGGGTTATAGGGCG
GATCGAGGACCTCTCAATACGTCCTGAGTCGTGGCAGGTCATTTTAACGG
TATAGTTGGATGAGTACGGGAACTCGATATTCGTCCCATTGAGCTGTTGG
AGTCGCGAGAGTACCCATAGTGCAATCAAGATGGGACTGCTCGCATCGAC
TGTGAGTGTGCTCCTCACCTGTATATGGTGTATATGGGTGTTTCGATAGC
CAGAAATTTGACGTGGAGCCCAGTGCAAGTTAATTACAAACACGAGATCA
GAGATCAACTCTCTTCGATTGGGCGTGGAGGTTTTGTTTCACAGATTGAT
TTTCTCCTCCATGGCATGAGCGATGACTCTGTTGCTGAAGTGACTATGGC
AGACCCTACTTAACCCCCCCCCCTCTACCGCCTCCATTTTCCACGTGCCT
ATTTTCACACAGGATCCGCGAATCGTCGTTATTCGTTCTCCCAGATCCAG
ATCGTCATTCTTGCGAGGTCTAGTCGAATACGAACAGGAGCATATGGTCG
CTCTGAAGCGGATGCTTCAAGTTGTTGCCCCCGAGGTTATTCATCAACTT
CCATCCCTCTACCCTGACGAGGCGTATGCGGAGTACCTGTTCGCGTCCTT
AGACGCTTAGAGGGGAAAGAGACTTGTCTGGTACTGGCTTTGCTTCCGTA
TCGGTCACCTACTGATGGGATTGAGGATTTCCTCAGAGGAAGGGGGCGCA
TCAATGTCTGTTCTCCCAGACTTGAAAAGCCATGCATGGCACTACTTGAT
AGCGGTGAAGGCCGGATCATGTTTTTTACTGTGCACCTCTGCATTTTTTT
AGTTATTTGGACATGAGGTAGCCTGGCGTTTGATTGGCCAGTAGGTGAGC
CTGGCATATTTTGACTCGTCACGCTTCACCACCGGCTAACTTCCGTTCGC
AGAGCTGTGGTATGCACCAAAGCTGCTGGATAAAAAAACTACAACCCATC
GAACACTTGTAAGCACCGTTGTTTTTTTCCCAAGTAGACGAGGGCTGCAT
TGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2561:138..7142-

>mRNA_H-paniculata_contig2561.6971.1 ID=mRNA_H-paniculata_contig2561.6971.1|Name=mRNA_H-paniculata_contig2561.6971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig2561:138..7142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTTTACGTCAATCGTCCTCATCGCGATTGTCCAACTCTATAGTTC
CTTCTCCTATGCCTTTTGTACATACACAAGCCGTTGGAGCTCAAGTCACA
CCCTCTACAGCAGCCACACACTGCACACAGAAGAACTGCGGCCCTCCCCA
CCTACCGCGGACATTGTCTTATCTGCAGGCAACTGTGCATTTGCCCATCA
CTGCGGATTTTTGGAGGGTGTGGAACAAGCCCTCTCCGTGGACAGAGTCG
GTGCTGTACTAGGGACCTCGTCTGGCGCCTTAGTAGATGCATTTTACGTC
AATCGTCCTCATCGCGATTGTCCAACTCTATAGTTCCTTCTCCTATGCCT
TTTGTACATACACAAGCCGTTGGAGCTCAAGTCACACCCTCTACAGCAGC
CACACACTGCACACAGAAGAACTGCGGCCCTCCCCACCTACCGCGGACAT
TGTCTTATCTGCAGGCAACTGTGCATTTGCCCATCACTGCGGATTTTTGG
AGGGTGTGGAACAAGCCCTCTCCGTGGACAGAGTCGGTGCTGTACTAGGG
ACCTCGTCTGGCGCCTTAGTAGGGGCGTTGTGGGCAGCAGGATACTCCGC
AAAGGATATAGCTCGGATAATCGAACAAGAGAGCAAGGAAGGCGGGGGCG
TTGTGGGCAGCAGGATACTCCGCAAAGGATATAGCTCGGATAATCGAACA
AGAGAGCAAGGAAGGCGGGTGGCTCGCTGTGGTGAAGAAACCTCGTCGGA
ATCCATGGAGAGGATTGTTTTCGCTCTTGGATCTAGTTGTGCTACTGCAA
GAGTACTTGCCTCCAACGTTTGAAGAACTACTATTCCCTTTCGCCGTTCA
GGTGCAAGACTCAGACGGAAAACCAAGGTGGCTCGCTGTGGTGAAGAAAC
CTCGTCGGAATCCATGGAGAGGATTGTTTTCGCTCTTGGATCTAGTTGTG
CTACTGCAAGAGTACTTGCCTCCAACGTTTGAAGAACTACTATTCCCTTT
CGCCGTTCAGGTGCAAGACTCAGACGGAAAACCAAGTCTACTGCGGTCTG
GGCCTCTTCCTGAAGCCGTAGCAGCGTCCTTGGCTGCTGCTTTTATCTTC
AAACCCGTTGTGATACAAGGGAAGACATTTCGTTCGACTGCTGCTCGAGA
TTGGACGGGTTTGTCGGCATGCACCAGGTGGCGTCCAGGACGACGGGTTC
TTGTGCACTGTGTGGAAGATGGCCGTGGCTTGAAAGGAGATATAAGTGGA
CTGGGAGATTGGGTACAGTCTACTGCGGTCTGGGCCTCTTCCTGAAGCCG
TAGCAGCGTCCTTGGCTGCTGCTTTTATCTTCAAACCCGTTGTGATACAA
GGGAAGACATTTCGTTCGACTGCTGCTCGAGATTGGACGGGTTTGTCGGC
ATGCACCAGGTGGCGTCCAGGACGACGGGTTCTTGTGCACTGTGTGGAAG
ATGGCCGTGGCTTGAAAGGAGATATAAGTGGACTGGGAGATTGGGTACAG
GATCCGCGAATCGTCGTTATTCGTTCTCCCAGATCCAGATCGTCATTCTT
GCGAGGTCTAGTCGAATACGAACAGGAGCATATGGTCGCTCTGAAGCGGA
TGCTTCAAGTTGTTGCCCCCGAGGTTATTCATCAACTTCCATCCCTCTAC
CCTGACGAGGCGTATGCGGAGTACCTGTTCGCGTCCTTAGACGCTTAGGA
TCCGCGAATCGTCGTTATTCGTTCTCCCAGATCCAGATCGTCATTCTTGC
GAGGTCTAGTCGAATACGAACAGGAGCATATGGTCGCTCTGAAGCGGATG
CTTCAAGTTGTTGCCCCCGAGGTTATTCATCAACTTCCATCCCTCTACCC
TGACGAGGCGTATGCGGAGTACCTGTTCGCGTCCTTAGACGCTTAG
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