mRNA_H-paniculata_contig11078.697.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11078.697.1
Unique NamemRNA_H-paniculata_contig11078.697.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11078.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11078contigH-paniculata_contig11078:520..3597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003660.1
Exons2
Model size1712
Cds size1338
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11078.697.1prot_H-paniculata_contig11078.697.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11078 520..3224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.7407608-CDS-H-paniculata_contig11078:519..14651622928814.7407608-CDS-H-paniculata_contig11078:519..1465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11078 520..1465 -
1691480630.5436633-CDS-H-paniculata_contig11078:519..14651691480630.5436633-CDS-H-paniculata_contig11078:519..1465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11078 520..1465 -
1622928814.7639148-CDS-H-paniculata_contig11078:2832..32241622928814.7639148-CDS-H-paniculata_contig11078:2832..3224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11078 2833..3224 -
1691480630.5538728-CDS-H-paniculata_contig11078:2832..32241691480630.5538728-CDS-H-paniculata_contig11078:2832..3224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11078 2833..3224 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.776317-UTR-H-paniculata_contig11078:3224..35971622928814.776317-UTR-H-paniculata_contig11078:3224..3597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11078 3225..3597 -
1691480630.5628889-UTR-H-paniculata_contig11078:3224..35971691480630.5628889-UTR-H-paniculata_contig11078:3224..3597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11078 3225..3597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11078.697.1

>prot_H-paniculata_contig11078.697.1 ID=prot_H-paniculata_contig11078.697.1|Name=mRNA_H-paniculata_contig11078.697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=446bp
MSGNSGSRKKAGVLKPQATARRSNSSSSSGASSLSGRRESEAIHSNKNGN
DNDKKLHDGASLTLITADTFSYEDVSDLCTVTPAPRRAGKRVSTSAGAGA
AAAATAKNGGGEAARGNSSKGRINGARQHTTTDKGENGSARRRRLRKRTD
FTSTTESNPTDGEQTARSAAAAAVETTREEGKRRTTINGAPVTTPKNAKG
KISLQRAAANKDNGSNDSSTSSNNNAATTNINSGNNNKNTSTSTISTASI
SHNSSNDKIESTNGTENKVEAAQQEGEGGAGADNGDNSSTESEGTAATPA
TTRKIPSSVSTITAAAIATLITSAGKVGTKSEVESSGCSGDGAKHRGTLE
RQNGDTMKFMSGEVKSIAGERAAAMVVAERSVERSAPAVAERSIERSAGP
SLTGVAESGARTVGSATVAVASGREKRKRDLVSDKEGDTVAPRGSK
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mRNA from alignment at H-paniculata_contig11078:520..3597-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11078.697.1 ID=mRNA_H-paniculata_contig11078.697.1|Name=mRNA_H-paniculata_contig11078.697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3078bp|location=Sequence derived from alignment at H-paniculata_contig11078:520..3597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAACTAAAGGAGGAATCGCGCGTGGGGGGGGGATAAGGGAAGGGATAA
AAAAGAAACCCCGAGAGGCAGTCAGAGAGGAGGAGAGACAAGAGGAGCAA
TCATTTTTTGCATTTCAAAAAAATAACACACAATACACGTATTTGTGTAC
TGTCTGTGTGAGACAGCCGTTTGTTTCTGTGTTTGGTCGTTCGGTGTGCT
TCTGAGGCCTCGCCGCTCAAACCTTGAAGCGAGGTCAGAGTCTATCTAAG
GTAGCGAGGGACAGACGAGATTATATCTGCACGCCGACACCTTCTGGGGG
GAAGCACGAACGTCTTGCCGATCAAGGTCCAGCTGCTATTCACTCAACCG
CAGTCTCCGGCTGCCGTGTTATCATGAGTGGAAACAGCGGTTCAAGGAAA
AAGGCAGGCGTACTAAAGCCGCAAGCAACTGCACGGAGAAGCAACAGCAG
CAGCAGCAGCGGGGCTTCGTCTCTGTCAGGCAGACGCGAATCTGAGGCAA
TCCATAGCAACAAAAACGGCAACGATAACGATAAGAAACTACACGATGGC
GCAAGTTTGACGCTAATCACTGCAGATACGTTCAGCTACGAGGACGTATC
CGACTTGTGCACGGTCACGCCTGCTCCTAGGCGCGCGGGAAAGAGAGTAT
CGACATCTGCTGGGGCAGGGGCGGCGGCGGCGGCGACGGCAAAGAATGGA
GGTGGTGAAGCCGCGCGTGGGAACAGCAGCAAGGGCCGTATCAATGGCGC
CCGCCAACACACCACGTGAGATAGCAAGATAGAGACAGAGGGGAGACACA
GAGCTTGTGTTGGTGTGGTGTTGGTGTGGCCTGTCCTGGGTCGCGATCTC
GTCATCATCGGTCGAGTAGTGAGATGGTAGACGAAATCGTTTGGCGGAAG
CAATACTGTACTGTAGATAACCCCCCATTCTATTTATAAGGTGTACCTCA
ACTCGATTCGTTCAATAGAAGAGTCTACAGGGAATAGGATGGACGATGAG
GGCATGTGATATATGAGAGAGCGAGATAAAGAGAGGCAAGAGAGTTGGTG
TTGGTGCGTTGTTGGCGGGCCCTTGTTCAAGAGGCTTCTCATGATGGCCG
CGATGCCAGTGTCATAATTGGAAGTCGTGGTACTCGTCGTTTCAGAGTAG
CTTTTCGATTCTTAACTCGAGTGACTTTTGGATAAGGAATCTTCACGGGC
GTAATGCCTGTCGTGCGTGGGCTATATGGGTTTTTGGTCGTGACTGAATG
GAAAAGACGACAAAGACAAATTGCACATACATAGTTCACCCTTTGTAATT
ACCATATACCTGGTACCTGGTAGTATGTAAGGTAGCCCCCCCCCCTGTAA
GGCGGATGGATATTTTAATACCCCCTATCCTAGCTTGTCGCCATACCCAG
CCTCGCCTTAACATCGAGGTATCCCACCCTCTCTTACGCAACTCTACAAT
TTGCTTGTTCCAAGTGCTCTGCAGTGATTAGGCCCAGTACGTTCTTGTTT
CAATTGACTATACAGTAGTGTTTCAATTTCGGAGAGCATGCCCACAAACA
ATACTATACTGTAATCGACAGATGTCGAATAAGGGGGGAAATTTTGCCCC
CATGTCTGTGCTTCTTGCTTGTATTATGTGCCGAAAAGAACGGAATTCCA
CTGCTGTTGTCCTATGCGACAAGAGCCTTCCGCTCCATTTTGGCGTGACA
ACTCGACGGTGATAGCTGCAGTGGCAGCTGATATTAATTCCCCTTGTAAA
GAAACGCAACCTGGCCTGGCGATAAGCTGAAATGTCGCTCGATCCCAGGG
CTCCGCCCCAGGATTGTAGAGATACGAGGTCAATGTTCTCTGCCTCTGGC
ACGTATTTACCGTCAGTGCATCCCCCTTTGTATTGTCATAATTTTTTCAT
AGATAGTTCAAATGGTGCGCTGAATGATGAGCACACGCAGCAGCTTTGGA
ATGTGAGCTACCGGACCTTCGGATCATATCCAGTACGTTACTTCAAAGCA
AATTCGATGTAGTGACCATTTTTTAGATAGAAGTGGATAGAATTTTTTTT
TAATGTGTTGGTTGCATGTTTTGCTAGTACCATTTCTCTTACACCGCAGG
ACTTATGGACCTCCCCCTCCCCACCCGAACAGTACCGACAAAGGTGAAAA
CGGCTCAGCTAGGCGCAGACGGCTGCGAAAACGGACAGACTTCACATCCA
CCACAGAATCGAACCCCACGGACGGAGAACAAACTGCACGGTCGGCGGCG
GCGGCGGCAGTGGAGACGACACGGGAGGAAGGTAAAAGACGAACAACAAT
AAACGGTGCGCCTGTGACAACGCCAAAAAACGCAAAGGGCAAAATCAGTC
TGCAGCGCGCGGCGGCGAACAAGGACAATGGCAGCAATGACAGCAGCACC
AGCAGTAACAACAACGCCGCCACCACCAACATCAACAGCGGTAACAACAA
TAAAAACACCAGCACCAGCACCATCAGCACCGCTTCCATCAGCCATAACA
GCAGCAACGACAAAATCGAATCGACGAACGGTACTGAAAATAAAGTGGAA
GCAGCACAGCAAGAAGGAGAAGGAGGAGCAGGAGCAGACAACGGCGACAA
CAGCAGCACCGAATCGGAGGGCACAGCAGCAACACCCGCGACCACTCGGA
AGATCCCTTCTTCTGTCTCCACTATTACCGCGGCTGCTATTGCCACTCTC
ATTACTAGCGCGGGAAAGGTTGGCACGAAAAGTGAGGTCGAAAGCAGCGG
GTGCAGTGGCGACGGCGCCAAGCATAGAGGCACACTTGAAAGGCAAAACG
GGGATACCATGAAGTTCATGTCAGGGGAGGTGAAATCGATCGCAGGGGAG
CGAGCGGCGGCGATGGTGGTGGCCGAACGGTCGGTAGAAAGATCTGCGCC
AGCGGTAGCGGAACGGTCTATAGAACGGTCTGCAGGTCCGTCGTTAACAG
GAGTAGCCGAGAGTGGCGCGAGGACGGTGGGGTCGGCGACGGTGGCGGTG
GCGTCTGGGAGAGAAAAGAGGAAAAGAGACTTGGTCAGTGATAAGGAGGG
TGACACGGTGGCGCCGCGCGGGAGTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11078:520..3597-

>mRNA_H-paniculata_contig11078.697.1 ID=mRNA_H-paniculata_contig11078.697.1|Name=mRNA_H-paniculata_contig11078.697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2676bp|location=Sequence derived from alignment at H-paniculata_contig11078:520..3597- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGAAACAGCGGTTCAAGGAAAAAGGCAGGCGTACTAAAGCCGCA
AGCAACTGCACGGAGAAGCAACAGCAGCAGCAGCAGCGGGGCTTCGTCTC
TGTCAGGCAGACGCGAATCTGAGGCAATCCATAGCAACAAAAACGGCAAC
GATAACGATAAGAAACTACACGATGGCGCAAGTTTGACGCTAATCACTGC
AGATACGTTCAGCTACGAGGACGTATCCGACTTGTGCACGGTCACGCCTG
CTCCTAGGCGCGCGGGAAAGAGAGTATCGACATCTGCTGGGGCAGGGGCG
GCGGCGGCGGCGACGGCAAAGAATGGAGGTGGTGAAGCCGCGCGTGGGAA
CAGCAGCAAGGGCCGTATCAATGGCGCCCGCCAACACACCACATGAGTGG
AAACAGCGGTTCAAGGAAAAAGGCAGGCGTACTAAAGCCGCAAGCAACTG
CACGGAGAAGCAACAGCAGCAGCAGCAGCGGGGCTTCGTCTCTGTCAGGC
AGACGCGAATCTGAGGCAATCCATAGCAACAAAAACGGCAACGATAACGA
TAAGAAACTACACGATGGCGCAAGTTTGACGCTAATCACTGCAGATACGT
TCAGCTACGAGGACGTATCCGACTTGTGCACGGTCACGCCTGCTCCTAGG
CGCGCGGGAAAGAGAGTATCGACATCTGCTGGGGCAGGGGCGGCGGCGGC
GGCGACGGCAAAGAATGGAGGTGGTGAAGCCGCGCGTGGGAACAGCAGCA
AGGGCCGTATCAATGGCGCCCGCCAACACACCACTACCGACAAAGGTGAA
AACGGCTCAGCTAGGCGCAGACGGCTGCGAAAACGGACAGACTTCACATC
CACCACAGAATCGAACCCCACGGACGGAGAACAAACTGCACGGTCGGCGG
CGGCGGCGGCAGTGGAGACGACACGGGAGGAAGGTAAAAGACGAACAACA
ATAAACGGTGCGCCTGTGACAACGCCAAAAAACGCAAAGGGCAAAATCAG
TCTGCAGCGCGCGGCGGCGAACAAGGACAATGGCAGCAATGACAGCAGCA
CCAGCAGTAACAACAACGCCGCCACCACCAACATCAACAGCGGTAACAAC
AATAAAAACACCAGCACCAGCACCATCAGCACCGCTTCCATCAGCCATAA
CAGCAGCAACGACAAAATCGAATCGACGAACGGTACTGAAAATAAAGTGG
AAGCAGCACAGCAAGAAGGAGAAGGAGGAGCAGGAGCAGACAACGGCGAC
AACAGCAGCACCGAATCGGAGGGCACAGCAGCAACACCCGCGACCACTCG
GAAGATCCCTTCTTCTGTCTCCACTATTACCGCGGCTGCTATTGCCACTC
TCATTACTAGCGCGGGAAAGGTTGGCACGAAAAGTGAGGTCGAAAGCAGC
GGGTGCAGTGGCGACGGCGCCAAGCATAGAGGCACACTTGAAAGGCAAAA
CGGGGATACCATGAAGTTCATGTCAGGGGAGGTGAAATCGATCGCAGGGG
AGCGAGCGGCGGCGATGGTGGTGGCCGAACGGTCGGTAGAAAGATCTGCG
CCAGCGGTAGCGGAACGGTCTATAGAACGGTCTGCAGGTCCGTCGTTAAC
AGGAGTAGCCGAGAGTGGCGCGAGGACGGTGGGGTCGGCGACGGTGGCGG
TGGCGTCTGGGAGAGAAAAGAGGAAAAGAGACTTGGTCAGTGATAAGGAG
GGTGACACGGTGGCGCCGCGCGGGAGTAAGTACCGACAAAGGTGAAAACG
GCTCAGCTAGGCGCAGACGGCTGCGAAAACGGACAGACTTCACATCCACC
ACAGAATCGAACCCCACGGACGGAGAACAAACTGCACGGTCGGCGGCGGC
GGCGGCAGTGGAGACGACACGGGAGGAAGGTAAAAGACGAACAACAATAA
ACGGTGCGCCTGTGACAACGCCAAAAAACGCAAAGGGCAAAATCAGTCTG
CAGCGCGCGGCGGCGAACAAGGACAATGGCAGCAATGACAGCAGCACCAG
CAGTAACAACAACGCCGCCACCACCAACATCAACAGCGGTAACAACAATA
AAAACACCAGCACCAGCACCATCAGCACCGCTTCCATCAGCCATAACAGC
AGCAACGACAAAATCGAATCGACGAACGGTACTGAAAATAAAGTGGAAGC
AGCACAGCAAGAAGGAGAAGGAGGAGCAGGAGCAGACAACGGCGACAACA
GCAGCACCGAATCGGAGGGCACAGCAGCAACACCCGCGACCACTCGGAAG
ATCCCTTCTTCTGTCTCCACTATTACCGCGGCTGCTATTGCCACTCTCAT
TACTAGCGCGGGAAAGGTTGGCACGAAAAGTGAGGTCGAAAGCAGCGGGT
GCAGTGGCGACGGCGCCAAGCATAGAGGCACACTTGAAAGGCAAAACGGG
GATACCATGAAGTTCATGTCAGGGGAGGTGAAATCGATCGCAGGGGAGCG
AGCGGCGGCGATGGTGGTGGCCGAACGGTCGGTAGAAAGATCTGCGCCAG
CGGTAGCGGAACGGTCTATAGAACGGTCTGCAGGTCCGTCGTTAACAGGA
GTAGCCGAGAGTGGCGCGAGGACGGTGGGGTCGGCGACGGTGGCGGTGGC
GTCTGGGAGAGAAAAGAGGAAAAGAGACTTGGTCAGTGATAAGGAGGGTG
ACACGGTGGCGCCGCGCGGGAGTAAG
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