mRNA_H-paniculata_contig25606.6970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25606.6970.1
Unique NamemRNA_H-paniculata_contig25606.6970.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A6H5J951_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J951_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.360e-21
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            PR EGASFLA KQ LLLSYC+++C+Y AAK RGEAL GGG+A RL+E+RTVMEKLRPMDR
Sbjct:  160 PRHEGASFLALKQTLLLSYCREICSYAAAKARGEALGGGGAAGRLVELRTVMEKLRPMDR 219
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BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A8K0H8E6_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H8E6_9ROSA)

HSP 1 Score: 62.0 bits (149), Expect = 8.260e-10
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P  EG S+L AK +LLL+YCQ L  Y+  K +G ++EG    R L+E+R  +EK+RP+D+
Sbjct:   45 PTAEGLSYLEAKHLLLLNYCQSLVYYLLRKAKGNSIEGHPVVRSLVEIRLFLEKIRPIDK 104
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BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A6P8D8J2_PUNGR (neuroguidin-B isoform X1 n=4 Tax=Punica granatum TaxID=22663 RepID=A0A6P8D8J2_PUNGR)

HSP 1 Score: 61.6 bits (148), Expect = 1.170e-9
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P  +G SFL AK +LLLSYCQ L  Y+  K +G ++EG    R L+E+R  +EK+RP+D+
Sbjct:   51 PTADGISFLDAKHLLLLSYCQSLVYYLLRKAKGFSIEGHPVVRSLVEIRLFLEKIRPIDK 110
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BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A498J9W8_MALDO (Uncharacterized protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498J9W8_MALDO)

HSP 1 Score: 60.1 bits (144), Expect = 1.570e-9
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            PR +G S+L AK +LLL+YCQ L  Y+  K +G ++ G    R L+E+R  +EK+RP+D+
Sbjct:   53 PRADGISYLEAKHLLLLNYCQSLVYYLLRKAKGFSINGHPVVRSLVEIRLFLEKIRPIDK 112
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BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: Q93ZQ9_ARATH (AT1G07840 protein n=6 Tax=Arabidopsis TaxID=3701 RepID=Q93ZQ9_ARATH)

HSP 1 Score: 61.2 bits (147), Expect = 1.580e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P   G S+L AK +LLLSYCQDL  Y+  K +G +++G    R L+E+R  +EK+RP+D+
Sbjct:   51 PTAGGISYLEAKHLLLLSYCQDLVYYILRKAKGLSIDGHPLVRSLVEIRMFLEKIRPIDK 110
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BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A059BSA4_EUCGR (Uncharacterized protein n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A059BSA4_EUCGR)

HSP 1 Score: 60.8 bits (146), Expect = 2.240e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P  EG S+L AK +LLLSYCQ L  Y+  K +G +++G    R L+E+R  +EK+RP+D+
Sbjct:   51 PTAEGISYLEAKHLLLLSYCQSLVYYLLRKAKGLSIDGHPVVRSLVEIRLFLEKIRPIDK 110
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BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A1D1YIN7_9ARAE (Neuroguidin n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YIN7_9ARAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.260e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P  +G S+L AK +LLLSYCQ +  YV  K +G ++EG    R L+E+R  +EK+RP+D+
Sbjct:   55 PTGDGISYLEAKHLLLLSYCQSIVYYVLRKAKGLSIEGHPVVRSLVEIRLFLEKIRPIDK 114
[Close]
BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A1R3GHN1_9ROSI (Sas10/Utp3/C1D n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GHN1_9ROSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.280e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P  +G S+L AK +LLL+YCQ L  Y+  K +G A+EG    R L+E+R  +EK+RP+D+
Sbjct:   51 PTADGMSYLEAKHLLLLNYCQSLVYYLLRKAKGLAIEGHPVVRSLVEIRLFLEKIRPIDK 110
[Close]
BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: UPI00053C3337 (neuroguidin n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3337)

HSP 1 Score: 60.8 bits (146), Expect = 2.290e-9
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P  +G S+L AK +LLLSYCQ L  Y+  K RG ++EG    R L+E+R  +EK+RP+D+
Sbjct:   62 PTADGISYLEAKHLLLLSYCQCLVYYLLRKARGFSIEGHPVVRSLVEIRLFLEKIRPIDK 121
[Close]
BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Match: A0A1R3GS74_COCAP (Sas10/Utp3/C1D n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3GS74_COCAP)

HSP 1 Score: 60.1 bits (144), Expect = 2.520e-9
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRTVMEKLRPMDR 180
            P  +G S+L AK +LLL+YCQ L  Y+  K +G ++EG    R L+E+R  +EK+RP+D+
Sbjct:   51 PTADGMSYLEAKHLLLLNYCQSLVYYLLRKAKGLSIEGHPMVRSLVEIRLFLEKIRPIDK 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25606.6970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J951_9PHAE1.360e-2176.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K0H8E6_9ROSA8.260e-1046.67Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A6P8D8J2_PUNGR1.170e-948.33neuroguidin-B isoform X1 n=4 Tax=Punica granatum T... [more]
A0A498J9W8_MALDO1.570e-945.00Uncharacterized protein n=1 Tax=Malus domestica Ta... [more]
Q93ZQ9_ARATH1.580e-946.67AT1G07840 protein n=6 Tax=Arabidopsis TaxID=3701 R... [more]
A0A059BSA4_EUCGR2.240e-946.67Uncharacterized protein n=3 Tax=Myrtoideae TaxID=1... [more]
A0A1D1YIN7_9ARAE2.260e-946.67Neuroguidin n=1 Tax=Anthurium amnicola TaxID=16788... [more]
A0A1R3GHN1_9ROSI2.280e-946.67Sas10/Utp3/C1D n=2 Tax=Corchorus TaxID=93758 RepID... [more]
UPI00053C33372.290e-948.33neuroguidin n=1 Tax=Tarenaya hassleriana TaxID=285... [more]
A0A1R3GS74_COCAP2.520e-945.00Sas10/Utp3/C1D n=1 Tax=Corchorus capsularis TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25606contigH-paniculata_contig25606:3126..3308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog2880.D7FH58
Preferred nameNGDN
KEGG koko:K08873,ko:K14765,ko:K14767
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG3117@1,KOG3117@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.8479486-CDS-H-paniculata_contig25606:3125..33081622929756.8479486-CDS-H-paniculata_contig25606:3125..3308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25606 3126..3308 -
1691480997.8599627-CDS-H-paniculata_contig25606:3125..33081691480997.8599627-CDS-H-paniculata_contig25606:3125..3308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25606 3126..3308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25606.6970.1prot_H-paniculata_contig25606.6970.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25606 3126..3308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25606.6970.1

>prot_H-paniculata_contig25606.6970.1 ID=prot_H-paniculata_contig25606.6970.1|Name=mRNA_H-paniculata_contig25606.6970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
PREEGASFLAAKQMLLLSYCQDLCAYVAAKGRGEALEGGGSARRLLEVRT
VMEKLRPMDR*
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mRNA from alignment at H-paniculata_contig25606:3126..3308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25606.6970.1 ID=mRNA_H-paniculata_contig25606.6970.1|Name=mRNA_H-paniculata_contig25606.6970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig25606:3126..3308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCGGGAGGAGGGGGCATCGTTTCTAGCGGCCAAGCAAATGCTGCTGCT
CAGTTATTGCCAAGACCTGTGCGCCTACGTGGCCGCCAAGGGGCGGGGAG
AGGCCTTGGAAGGCGGCGGATCCGCGCGAAGACTGCTGGAGGTTCGAACG
GTGATGGAAAAGCTGCGGCCGATGGACAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25606:3126..3308-

>mRNA_H-paniculata_contig25606.6970.1 ID=mRNA_H-paniculata_contig25606.6970.1|Name=mRNA_H-paniculata_contig25606.6970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig25606:3126..3308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCGGGAGGAGGGGGCATCGTTTCTAGCGGCCAAGCAAATGCTGCTGCT
CAGTTATTGCCAAGACCTGTGCGCCTACGTGGCCGCCAAGGGGCGGGGAG
AGGCCTTGGAAGGCGGCGGATCCGCGCGAAGACTGCTGGAGGTTCGAACG
GTGATGGAAAAGCTGCGGCCGATGGACAGGTAGCCGCGGGAGGAGGGGGC
ATCGTTTCTAGCGGCCAAGCAAATGCTGCTGCTCAGTTATTGCCAAGACC
TGTGCGCCTACGTGGCCGCCAAGGGGCGGGGAGAGGCCTTGGAAGGCGGC
GGATCCGCGCGAAGACTGCTGGAGGTTCGAACGGTGATGGAAAAGCTGCG
GCCGATGGACAGGTAG
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