mRNA_H-paniculata_contig2558.6963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2558.6963.1
Unique NamemRNA_H-paniculata_contig2558.6963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2558.6963.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.230e-26
Identity = 58/115 (50.43%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:    1 MGLGKTAVTLVLHLIHAPKTPAGNVPLDEKQWGPIMGNQ---------------------------------------EASRLCGGTLKIYPYHGGGRKRSPEFLAHHDIVVTTY 228
            MGLGKTA TL LHLIH PKTPA  VPLDEK+WGPI+G Q                                       EA RLCGG L IYPYHGG R++ P FLA  DIVVTTY
Sbjct:  636 MGLGKTAATLCLHLIHPPKTPAPGVPLDEKEWGPILGKQASPLTDRKSVTGEPEEPGKWVSKGTLVVCKVSLVGQWVEEAKRLCGGALSIYPYHGGNRRKDPAFLAKFDIVVTTY 750
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BLAST of mRNA_H-paniculata_contig2558.6963.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.230e-26
Identity = 58/115 (50.43%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:    1 MGLGKTAVTLVLHLIHAPKTPAGNVPLDEKQWGPIMGNQ---------------------------------------EASRLCGGTLKIYPYHGGGRKRSPEFLAHHDIVVTTY 228
            MGLGKTA TL LHLIH PKTPA  VPLDEK+WGPI+G Q                                       EA RLCGG L IYPYHGG R++ P FLA  DIVVTTY
Sbjct:  697 MGLGKTAATLCLHLIHPPKTPAPGVPLDEKEWGPILGKQASPLTDCKSVTGETEEPGKWVSKGTLVVCKVSLVGQWVEEAKRLCGGALSIYPYHGGNRRKDPAFLAKFDIVVTTY 811
[Close]
BLAST of mRNA_H-paniculata_contig2558.6963.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 4.270e-26
Identity = 56/116 (48.28%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:    1 MGLGKTAVTLVLHLIHAPKTPAGNVPLDEKQWGPIMGNQ----------------------------------------EASRLCGGTLKIYPYHGGGRKRSPEFLAHHDIVVTTY 228
            MGLGKTA TL LHLIH P+TPA  VPLDEK+WGPI+G Q                                        EA RLCGG L IYPYHGGGR + P FL+  D+VVTTY
Sbjct:  665 MGLGKTAATLCLHLIHPPRTPAPGVPLDEKEWGPILGKQAEPLAYKKAQASVSPEAPGQWVSKGTLVVCKVSLVGQWVEEAKRLCGGALSIYPYHGGGRSKDPSFLSQFDMVVTTY 780
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2558.6963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0T2_ECTSI1.230e-2650.43Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5KW09_9PHAE1.230e-2650.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S9_ECTSI4.270e-2648.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2558contigH-paniculata_contig2558:13402..17505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7G0T2
KEGG koko:K15173
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Exons2
Model size230
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929756.0202599-CDS-H-paniculata_contig2558:13401..135181622929756.0202599-CDS-H-paniculata_contig2558:13401..13518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 13402..13518 +
1691480997.4658666-CDS-H-paniculata_contig2558:13401..135181691480997.4658666-CDS-H-paniculata_contig2558:13401..13518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 13402..13518 +
1622929756.0375423-CDS-H-paniculata_contig2558:17394..175051622929756.0375423-CDS-H-paniculata_contig2558:17394..17505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 17395..17505 +
1691480997.4757142-CDS-H-paniculata_contig2558:17394..175051691480997.4757142-CDS-H-paniculata_contig2558:17394..17505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 17395..17505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2558.6963.1prot_H-paniculata_contig2558.6963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2558 13402..17505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2558.6963.1

>prot_H-paniculata_contig2558.6963.1 ID=prot_H-paniculata_contig2558.6963.1|Name=mRNA_H-paniculata_contig2558.6963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MGLGKTAVTLVLHLIHAPKTPAGNVPLDEKQWGPIMGNQEASRLCGGTLK
IYPYHGGGRKRSPEFLAHHDIVVTTY
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mRNA from alignment at H-paniculata_contig2558:13402..17505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2558.6963.1 ID=mRNA_H-paniculata_contig2558.6963.1|Name=mRNA_H-paniculata_contig2558.6963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4104bp|location=Sequence derived from alignment at H-paniculata_contig2558:13402..17505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCTGGGTAAGACGGCGGTCACTCTAGTATTGCACCTCATTCATGC
GCCCAAGACACCGGCTGGGAACGTGCCGCTGGATGAGAAGCAGTGGGGTC
CGATCATGGGTAATCAGGTTTGTTACTTTGATTGGGATTGTTTGGTAATG
GGGGTGTTGGTGTTGGTGTTGGTGATACATTGTAGAGGTTGCCCGACTCC
CGATGCAAATGCAGTATTAAAATATATACGGGTTGACTGTATCTCGAAAT
CTTTGTAAACAACATTTATGTGAGGAAAATACGTGAAATTATGTGATTTT
CATGTATGGATCTCCGATATCTGGAACATGCACAAAAATAATAAACCAAT
CAGAGTCTGGTCGTTGAATGGTAGTGATGAGCGCTGCTCATTGCTGTCTC
CATTGCGAGTTCGCGTCAATTTTACCGGGCGGATTGACTTGCTTTTTTTC
TCTCTCTCGCTTTTTCACGAGGTAAGGGACGATGGTAACTTGATATATAC
CAGATTTCATGGCTCATGACGCCTCGGTCGCAGATGTCACATAGCTGACA
CGATGAATTGTATCGGTGTTCACTGTAATGAAATAGTGCTGTTGCTGCTG
TTGGCGTGAGCGCTGCTGTTGGTGGTTGTAAGAGGTGTTCGTCATGGTAT
CATATAGCAGTTATAACACTTCTTGTATATTTCTGAGACAAGAAGCTGCA
CCTATTTCGCAAGAGTGGCGAGAGTGGCGACCATGCAGTTTGGCAGCGGC
AACAAGTGGGTGAACAAGAGATGTCTACACACACATGAGATCAATTTCCC
CTTATCTTCAATCCTCTAGGTTCGAAACTCGGCGAGTTTGTGTGCCTCCG
AAGTCTAATTTGGCTACACAAGAAAACTGTCGCCTAAAATGCCACAATAA
CAAGTGCTCTAGTCTTGTATCGGCCCCCCTAGGGATTTCTGACTCTTCCA
GGAGCTGTAGAGGAATTGTTTTGTTTCTCGGCGTTACGAAAAAATGGATA
CTTGCTCTTTCTCACTCTACACTGAATCCTCACGATGAAAAGTCTCTGAT
GGGCTAGAAACAAACAACCCCATTTTGCACCATGTGCCGGTTTATTCGTC
GTCATTCACGATTGGTCAGTAGCAAATGTGATCTTCTAGTAGTTACGAAG
TCCGGTTTGTTCCCAGAGGGTTAACGACCGTTAGTAATGTAGTTTATTTA
TTGATGCTTCGTTGCTCGTGTTATCGTAGTGTTTTTCCGGTACAGTACAG
TAGACGAAAAATATATCGCCAACGTTTGTTCTAACACTTGCACAGCTCAA
ATAAGTAATTCTTTTTTTTCTCATTGAGAACACCTTCATAAGAATTTTAA
TTTGTTAGACGCCCTCCATTCTCAAGATTATAAAGATGTACGGAGGTGCG
CTCATACTCCAGAATCGAATATTTATTGAACATGGGAAGGACCTCCAGCT
GTCGATTTGATCAGATTTAGAAAGCTCCCAAATATTTCATGCTGCCATCG
TCATGTTCCAAAATCCGAGACTCACGTACAGCAAAGGTGTGTCGCATTTC
CGCTGTGCTCTGTTGGACTGTGTAACGTTGTCACCTGGCAGGCGCTACCC
TTGAGCAATAACGGTAATTTCTTGGCATCGCAAGCACCAGGCAAGGTTGT
GTCCACGGGTACTCTGGTGGTGTGCAAGTTGTCACTCGTGGGGCAATGGG
TGGAGGTGCATTTATGGGGGGGATGGGGTTTGCTTCAGTGTTATTAACTC
GAATGTTTGCGCTGAACAAATTTCTTTTTTTCGAATTTCGTTTCCCTGCT
TACCCGACGCAAATTAATTACCGGTGGAGTAAGCTTCTGCTCCCCTATTC
AAGAATTTTTTTATTCCTCAAATGAAGTTAGTGAAGGTCAATAAGGGCTG
CTGTGAATTTTGGAACTATTTCAGCATAAGATTTGGCGCTTTCGAAAATA
CCGTTCGAATCGGTATCTGAGGGTCCGTCACGCGACCGTTATGTGTTCGA
TTATAGAGTATGAGTGCACGCTCGCACGTTTTACCACATTCGAGCATGAT
GGTTGGCTAATGGTTGAAGGTTTCATGGAAAACGAGCGAGACGGTGTCGA
GGAATTCCGGTAAAGCGGGGTGGGGGTGCGGGTCGGGAGGGTAGGGTAAG
GATTCAAGCGCGAGTCCCATGAGCAAATTGAAGTGGCTTGGGAGAAGACT
CGGGTGGTCGTTGACTTGTCACTCCCTCGGCGAGATCATCGGTTCCCAAT
ATTTTGCGCCTTTTCTGGCACAACATAGTTCCCACGCGTAAAGATAGAGT
TTATCCTCTACGGACACTTTGTGTGGGCACCATTCGTTTCTATCAGGGTA
TTTTTCAGTTTTACCCTCCGATTTATGAGCCTATTTGCTCTGTGCAGGAG
GGTTTTGAGGATCGACGTTTTTTTTTTTCTTTTTGGAAAATGTCATTATG
GAAAAGGAACTTTCATCGTGTTTGGCCAATGATCGGAACTCCTTTGTGGT
TGGCCAAGTATTGCCCTGAGGAAAGGTAAGGTAAGGTACACTCGATTGCT
TCGCAACTGCACGAAAGTTGAACGGCAGCCTGCAGTACCACTGTACCGGC
GGTAGGAGGCCCATGCATCGAGAGGACGGTTACCCTCAACGGGCATCGCC
CTCAGTTCCTCTATTTTCGGTAAGGCTGAGGAGAGTATCACAGTAAACTC
AAACAGATGCAGTGTTCCTTCCAGATTTCTCGTATGTATTCGTGTCTTGT
GTTCGTTTTAATCCAGGAGGTGTAACTCTTGAGGATTCCGATTGTGAAGG
GATTTCTATTTCGTTCGCGGGATGACTGTATTCGAAATCTTGGGCACTCC
GGTGCGAAAGAGAGCAGTTTTATCATAACTGGGTACGGAATTGAAGAAAT
GTTCAGGAGGAAAAGTCACCGCGTGTTGGCGCGGCTTAAAGTTCGGTTGT
TGATGTCGCAGTGGTCGTTTGCATTTGTTTTTTCTCTCATCCCCATGTTT
ATAGATGTGTGTATATATAGAGAGAGTTCCTTTCATGGATATACTCGATT
ATGCATTATGGAGGCACTTAAACATATCCATTTTTTAATGGAGTTCTACA
TGTTTTTTGGGTTGAAAACCAAGCGTTTGAGTCAAACCTTTGAATTTTAA
TACCAAAACATGCGCCGTAAAAAACAATATTCGGCCGAAAAGGGACCCTT
TTTTGGGACTTTTGGTATTGTCCCACAAGTACAGTATGTTGTGATTAGAG
ACGCACCTAAAGTTTCTCCGATTTTTAATTTATTTATTTAGAACCCTTCA
TGTTTTTGTGATTGAACCCATGATATTGTGTCAAGTAGTTGACTTTTAAC
ACCAAAACAGATGCCGTGCAAAAAAAAAACTCGACCAAAAAATACCAACA
AGTGCACGTCTTTTTTCGATTTCCACGGGAAAAGGTCAGAAAAGAAGGCC
GTTTTTTTGCCAAGTACTTCTTTTCATGGCTCGTGTTTTGGTGTTAACAT
TCAACCCAATAAACATTCAGAATTCCGTTAAAACAAGTACTATAAATCGG
ACATATTTAAGTATATATATATACAGTGGTTGAAGTCATTCCACCGTAGC
GGGGGGTTATTTGAGCCGCTTTATTTAACGAAGGAGCTTCTTTGAAAAGG
AAATCAGGCGTTTGCATTTCTTTCTTTTTTGCGTCTGCAGGACTGTGCCT
TTCAACTCGTGGACTGTGCACCTCTAGGGACGCACAAACACATGCAACTG
ACACAATTTCGATTCGAGTTTTTTCGCACTGTTTTTGTGAAGCGGCCTTC
GTTAAACAGTTGAACCCTCCCCTACTGTAAGATGCCTGCCTCATACTTTG
CTGTTTGTTGCTTTTCTCCTCTTCCTTTTCGCCCTTTTTTCACCTTTCTA
TCTTTATTTTTTTCTCCTTTATTTTTTTTCTCTCTCTTTTCTTTTTCTCT
CGTTTTTATTTTCTCTTTTCCCCCCCTCTCTTTCCTTTCCCAGGAGGCTA
GTCGCCTCTGCGGGGGCACTCTCAAGATCTACCCTTACCACGGGGGCGGG
CGCAAGAGGAGTCCCGAGTTCCTCGCTCACCATGACATCGTCGTCACCAC
CTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2558:13402..17505+

>mRNA_H-paniculata_contig2558.6963.1 ID=mRNA_H-paniculata_contig2558.6963.1|Name=mRNA_H-paniculata_contig2558.6963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig2558:13402..17505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCTGGGTAAGACGGCGGTCACTCTAGTATTGCACCTCATTCATGC
GCCCAAGACACCGGCTGGGAACGTGCCGCTGGATGAGAAGCAGTGGGGTC
CGATCATGGGTAATCAGATGGGCCTGGGTAAGACGGCGGTCACTCTAGTA
TTGCACCTCATTCATGCGCCCAAGACACCGGCTGGGAACGTGCCGCTGGA
TGAGAAGCAGTGGGGTCCGATCATGGGTAATCAGGAGGCTAGTCGCCTCT
GCGGGGGCACTCTCAAGATCTACCCTTACCACGGGGGCGGGCGCAAGAGG
AGTCCCGAGTTCCTCGCTCACCATGACATCGTCGTCACCACCTACGAGGC
TAGTCGCCTCTGCGGGGGCACTCTCAAGATCTACCCTTACCACGGGGGCG
GGCGCAAGAGGAGTCCCGAGTTCCTCGCTCACCATGACATCGTCGTCACC
ACCTAC
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