prot_H-paniculata_contig2558.6962.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2558.6962.1
Unique Nameprot_H-paniculata_contig2558.6962.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length170
Homology
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BLAST of mRNA_H-paniculata_contig2558.6962.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 6.450e-48
Identity = 107/169 (63.31%), Postives = 125/169 (73.96%), Query Frame = 0 
Query:    3 RHSSAEARVQAEVSELRTELADALLRVEQLSAQEAVLKATVRSLETDLKTERDLSTGDTATVNVAYLKSAVVRYMSTRDSGEQRSLLRVISTILQLTKLEVAAVEVRIAEXXXXXXXXXXXXXXXXXXXXXXVVGGVVGLVWRGGXXXXXXXA-GVDIGGYKDEGGESQ 170
            RH+S E  VQAEV+E+R ELA+ALLRVEQLSAQE++LK+T+R+LETDL TER+L +G+TA +NVAYLKSAVVRYMSTRD+GEQRSLLRVISTILQ TK EVA VE RI E               XXXXXXXVV  VVGLVW GG         GVD+    ++GGE +
Sbjct:    9 RHTSVEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGXXXXXXXVVXXVVGLVWGGGRAAPADGGDGVDV---TEDGGEER 174
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BLAST of mRNA_H-paniculata_contig2558.6962.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.090e-44
Identity = 107/167 (64.07%), Postives = 124/167 (74.25%), Query Frame = 0 
Query:    3 RHSSAEARVQAEVSELRTELADALLRVEQLSAQEAVLKATVRSLETDLKTERDLSTGDTATVNVAYLKSAVVRYMSTRDSGEQRSLLRVISTILQLTKLEVAAVEVRIAEXXXXXXXXXXXXXXXXXXXXXXVVGGVVGLVWRGGXXXXXXXA-GVDIGGYKDEGGE 168
            RH+S E  VQAEV+E+R ELA+ALLRVEQLSAQE++LK+T+R+LETDL TER+L +G+TA +NVAYLKSAVVRYMSTRD+GEQRSLLRVISTILQ TK EVA VE RI E                 XXXXXVVGGVVGLVW GG         GVD+    ++GGE
Sbjct: 1582 RHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVWGGGRAAAADDGDGVDV---TEDGGE 1745
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2558.6962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD5_ECTSI6.450e-4863.31GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSR4_9PHAE1.090e-4464.07GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..49
NoneNo IPR availableCOILSCoilCoilcoord: 96..116
IPR000237GRIP domainSMARTSM007551gripcoord: 62..109
e-value: 8.0E-5
score: 32.0
IPR000237GRIP domainPFAMPF01465GRIPcoord: 64..105
e-value: 1.2E-11
score: 44.3
IPR000237GRIP domainPROSITEPS50913GRIPcoord: 59..109
score: 12.062

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2558contigH-paniculata_contig2558:1626..4071 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2558.6962.1mRNA_H-paniculata_contig2558.6962.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2558 1626..4071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2558.6962.1 ID=prot_H-paniculata_contig2558.6962.1|Name=mRNA_H-paniculata_contig2558.6962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
KNRHSSAEARVQAEVSELRTELADALLRVEQLSAQEAVLKATVRSLETDL
KTERDLSTGDTATVNVAYLKSAVVRYMSTRDSGEQRSLLRVISTILQLTK
LEVAAVEVRIAELESTMVGRAGSMVGGAGRRVGGVVGGVVGLVWRGGGGG
GAAAAGVDIGGYKDEGGESQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000237GRIP_dom