mRNA_H-paniculata_contig2558.6962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2558.6962.1
Unique NamemRNA_H-paniculata_contig2558.6962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2558.6962.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 6.450e-48
Identity = 107/169 (63.31%), Postives = 125/169 (73.96%), Query Frame = 1 
Query:    7 RHSSAEARVQAEVSELRTELADALLRVEQLSAQEAVLKATVRSLETDLKTERDLSTGDTATVNVAYLKSAVVRYMSTRDSGEQRSLLRVISTILQLTKLEVAAVEVRIAEXXXXXXXXXXXXXXXXXXXXXXVVGGVVGLVWRGGXXXXXXXA-GVDIGGYKDEGGESQ 510
            RH+S E  VQAEV+E+R ELA+ALLRVEQLSAQE++LK+T+R+LETDL TER+L +G+TA +NVAYLKSAVVRYMSTRD+GEQRSLLRVISTILQ TK EVA VE RI E               XXXXXXXVV  VVGLVW GG         GVD+    ++GGE +
Sbjct:    9 RHTSVEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGXXXXXXXVVXXVVGLVWGGGRAAPADGGDGVDV---TEDGGEER 174
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BLAST of mRNA_H-paniculata_contig2558.6962.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.090e-44
Identity = 107/167 (64.07%), Postives = 124/167 (74.25%), Query Frame = 1 
Query:    7 RHSSAEARVQAEVSELRTELADALLRVEQLSAQEAVLKATVRSLETDLKTERDLSTGDTATVNVAYLKSAVVRYMSTRDSGEQRSLLRVISTILQLTKLEVAAVEVRIAEXXXXXXXXXXXXXXXXXXXXXXVVGGVVGLVWRGGXXXXXXXA-GVDIGGYKDEGGE 504
            RH+S E  VQAEV+E+R ELA+ALLRVEQLSAQE++LK+T+R+LETDL TER+L +G+TA +NVAYLKSAVVRYMSTRD+GEQRSLLRVISTILQ TK EVA VE RI E                 XXXXXVVGGVVGLVW GG         GVD+    ++GGE
Sbjct: 1582 RHTSLEGHVQAEVTEMRNELAEALLRVEQLSAQESLLKSTIRALETDLVTERNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAGXXXXXVVGGVVGLVWGGGRAAAADDGDGVDV---TEDGGE 1745
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2558.6962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD5_ECTSI6.450e-4863.31GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSR4_9PHAE1.090e-4464.07GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2558contigH-paniculata_contig2558:1626..4071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size510
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2558.6962.1prot_H-paniculata_contig2558.6962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2558 1626..4071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.9351063-CDS-H-paniculata_contig2558:1625..17841622929755.9351063-CDS-H-paniculata_contig2558:1625..1784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 1626..1784 -
1691480997.4209065-CDS-H-paniculata_contig2558:1625..17841691480997.4209065-CDS-H-paniculata_contig2558:1625..1784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 1626..1784 -
1622929755.9493012-CDS-H-paniculata_contig2558:2422..25491622929755.9493012-CDS-H-paniculata_contig2558:2422..2549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 2423..2549 -
1691480997.4323838-CDS-H-paniculata_contig2558:2422..25491691480997.4323838-CDS-H-paniculata_contig2558:2422..2549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 2423..2549 -
1622929755.9620426-CDS-H-paniculata_contig2558:3009..30721622929755.9620426-CDS-H-paniculata_contig2558:3009..3072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 3010..3072 -
1691480997.4417253-CDS-H-paniculata_contig2558:3009..30721691480997.4417253-CDS-H-paniculata_contig2558:3009..3072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 3010..3072 -
1622929755.974325-CDS-H-paniculata_contig2558:3910..40711622929755.974325-CDS-H-paniculata_contig2558:3910..4071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 3911..4071 -
1691480997.4550567-CDS-H-paniculata_contig2558:3910..40711691480997.4550567-CDS-H-paniculata_contig2558:3910..4071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2558 3911..4071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2558.6962.1

>prot_H-paniculata_contig2558.6962.1 ID=prot_H-paniculata_contig2558.6962.1|Name=mRNA_H-paniculata_contig2558.6962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
KNRHSSAEARVQAEVSELRTELADALLRVEQLSAQEAVLKATVRSLETDL
KTERDLSTGDTATVNVAYLKSAVVRYMSTRDSGEQRSLLRVISTILQLTK
LEVAAVEVRIAELESTMVGRAGSMVGGAGRRVGGVVGGVVGLVWRGGGGG
GAAAAGVDIGGYKDEGGESQ
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mRNA from alignment at H-paniculata_contig2558:1626..4071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2558.6962.1 ID=mRNA_H-paniculata_contig2558.6962.1|Name=mRNA_H-paniculata_contig2558.6962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2446bp|location=Sequence derived from alignment at H-paniculata_contig2558:1626..4071- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATAGGCATAGCAGCGCCGAAGCCAGGGTGCAAGCGGAGGTCTCCGA
GTTAAGAACAGAGCTGGCAGACGCACTCTTGAGGGTGGAGCAGCTTTCGG
CGCAAGAGGCTGTGCTTAAGGCCACGGTGCGATCGCTCGAGACGGACCTC
AAGACGGAGAGGTGCGAGGCTTGAAGATTAGACAGGCTACTGACGAATAT
CCTATCGGGCTAAAATGGGTAAATTTCAAATTCTGTGGAGATGAACATCG
TATAGAAGGGATAAGAGGTTTTTTTCTAAAAAAAAAATTGTTACCGAAGA
GAAGAATTATATCAGAATAAATTGGCATGATTAACCACTTGATGTAGGCC
AGGAAAATATTGTGTGGGCGACGGGCAGTGCAAATGGAGAGTCAAGACCG
ATAGCATATTCCACCTGTTGGCCCTTTGCAATAGACTTGACATCATCACG
GTGGACGTCGAGAATCCATGTAGCTGCTCGTGCCATGGTTACACAGTACT
TCGTTTTTGAGGTGCACTACCTGACACCTCCACGAGCTCAACTCTAGGGT
CGTTTGCACGCTGCAGACACACATGGCTTCTGGGCGGTTTTACGCATTAC
CCGGGTCCGATTTAACTCAATAGCTAAGCTTGGTGTAACGGACTTACAAG
AATCGTGGAGATTTGGGATTAAACGGTGACAAGTACTTGACGGCGAAGTT
GAGGCAAACGTAAGTTACGAGAAGGCTGTGAGCTGTCATGGTCCCCGAAA
AGACAAACTGTAACTGGATGTTGGTTAGTTGCCTTTGTATTGGGGCTATG
GTTCGTGGGACTCTCCAGAGGGACGTCGGGAACGTTCCCTTTACGTAAAG
TCTTCTTGTCAGGTCCATCGGATGTGAAATCGCAGGAACTCGAGTACCTT
CCCACATCGATGATGACCCAGTCGTGATTCGCGAAATTACTCGGAGTGTT
GACCCTGAATCTCTATTTTCGCGTGGTTCTTGTTTTTGTTTTTTTGCAGG
GACCTAAGCACGGGCGACACAGCGACGGTTAACGTCGCGTACCTGAAGTC
GGCCGTCGTGAGGTGCGGTGATTCCCTGTCCGTTTTTGTTTTTTTCTTTT
GATCTCATGGATGCCGTCTATTGTCATCACCGCCTGCTCGATTTCTTGCT
CTCGGTGCTATCGGTCATTCTACATTTGAACAACATTACACTACTATTAG
CACACCATACCAGATCACACTTGTTGATAGGCAAATCGTCATGAAAGAAA
TCCACACATTCAGAGCCGTCACCCCAACTTTTGAAGCTTACTCATCATGG
CCATAATCACCTGCATGAATTTGAGAAATGCAGCTACAAAAGTCCACCAG
TGGTGTATGTAGACTGCATTTCATGTTCATAAGGTACGGTACCCTCCACG
CTCCATCTCAACCAACATTCGCAAAAGCAGGATCCCTCCCCCATTTATAG
ATGGTCTTATTATGTGAACGGCAACCATGATGTGGATTTATGTGGATACC
CTCAAACGTTTTGGATATGCAGGTACATGTCTACCCGTGATTCCGGAGAG
CAGAGGAGCCTCCTCCGAGTTATCTCCACCATACTACAGCTTACCAAGCT
CGAAGTGGCGGCGGTGGAAGTTCGCATCGCTGAGCTAGAGAGCACGATGG
TGAGTGTAGGAGGAAGAGCGAAGAGTAGAAACTGTCTTCGATGGGGTTTT
TTGCCCTGTTGACGGACTCTGTGATCCGTTTGTATCTGCAGCACATCTCT
ACGTCGCGAAACACAACGAGCATAGCGTGTTGTGTGGCAGGGTGGCTATG
CTTTGGCCTTTCTTTGATGTTTCGTGACCCAACCATGCGGTCTCACTGGC
GCTTTTTCTGTTGATATGAAGAATTCTGCGTGGTCACTCGGGCCCCTAGC
GTAGGCTTCCCTTCCGCCAGACAACAGGAAGTTTCACGATTTTTTTTAAC
ACGCCAAGGATATTCTTCTCGCTCGCTCTCCTCCGCTCCTCAACCTCGAC
AGGATATCAATCCTCTTGGACGAATTTGACCGCCATGATCCTGTATCATG
AGTCAATGTTTTCCGTAGTGTGTGTGCCCTCTAATACTAACCATGTTTGG
TGGCGTCACTTTTAACAAGAAAATAGTTTACCAGTGACGAAGACAAGGAA
TGTCACCGGCACAGATGAACCCCGATGCACAGAGGAGTGGATCCATAAGC
AGAAATGAAAGACGAACGGTACCATCAACCCCTCGCCCTCTCCCCCGCGT
TATGCATGCAAACTTGATAACAATGTCTGCATCATAGGTGGGTCGAGCAG
GCAGCATGGTTGGGGGCGCTGGAAGGAGAGTTGGTGGCGTAGTGGGGGGT
GTGGTGGGATTGGTGTGGCGGGGAGGGGGCGGAGGAGGCGCGGCAGCGGC
CGGGGTTGACATCGGCGGGTACAAAGACGAAGGCGGAGAATCACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2558:1626..4071-

>mRNA_H-paniculata_contig2558.6962.1 ID=mRNA_H-paniculata_contig2558.6962.1|Name=mRNA_H-paniculata_contig2558.6962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig2558:1626..4071- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATAGGCATAGCAGCGCCGAAGCCAGGGTGCAAGCGGAGGTCTCCGA
GTTAAGAACAGAGCTGGCAGACGCACTCTTGAGGGTGGAGCAGCTTTCGG
CGCAAGAGGCTGTGCTTAAGGCCACGGTGCGATCGCTCGAGACGGACCTC
AAGACGGAGAGAAAAATAGGCATAGCAGCGCCGAAGCCAGGGTGCAAGCG
GAGGTCTCCGAGTTAAGAACAGAGCTGGCAGACGCACTCTTGAGGGTGGA
GCAGCTTTCGGCGCAAGAGGCTGTGCTTAAGGCCACGGTGCGATCGCTCG
AGACGGACCTCAAGACGGAGAGGGACCTAAGCACGGGCGACACAGCGACG
GTTAACGTCGCGTACCTGAAGTCGGCCGTCGTGAGGGACCTAAGCACGGG
CGACACAGCGACGGTTAACGTCGCGTACCTGAAGTCGGCCGTCGTGAGGT
ACATGTCTACCCGTGATTCCGGAGAGCAGAGGAGCCTCCTCCGAGTTATC
TCCACCATACTACAGCTTACCAAGCTCGAAGTGGCGGCGGTGGAAGTTCG
CATCGCTGAGCTAGAGAGCACGATGGTACATGTCTACCCGTGATTCCGGA
GAGCAGAGGAGCCTCCTCCGAGTTATCTCCACCATACTACAGCTTACCAA
GCTCGAAGTGGCGGCGGTGGAAGTTCGCATCGCTGAGCTAGAGAGCACGA
TGGTGGGTCGAGCAGGCAGCATGGTTGGGGGCGCTGGAAGGAGAGTTGGT
GGCGTAGTGGGGGGTGTGGTGGGATTGGTGTGGCGGGGAGGGGGCGGAGG
AGGCGCGGCAGCGGCCGGGGTTGACATCGGCGGGTACAAAGACGAAGGCG
GAGAATCACAGGTGGGTCGAGCAGGCAGCATGGTTGGGGGCGCTGGAAGG
AGAGTTGGTGGCGTAGTGGGGGGTGTGGTGGGATTGGTGTGGCGGGGAGG
GGGCGGAGGAGGCGCGGCAGCGGCCGGGGTTGACATCGGCGGGTACAAAG
ACGAAGGCGGAGAATCACAG
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