mRNA_H-paniculata_contig2556.6957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2556.6957.1
Unique NamemRNA_H-paniculata_contig2556.6957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2556.6957.1 vs. uniprot
Match: D7G7L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L4_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.350e-37
Identity = 75/123 (60.98%), Postives = 87/123 (70.73%), Query Frame = 2 
Query:   44 VRMMKRMRPEELSKLSKAAAEMEKRKLADKKKLAEFVSKTPELAGLVDDCYICTEPLLNNIGTSEFGVVSWHCRCTVAQKAHSACLFSKICH---GDDMCDMCSSPMRFASPRANRSGVMIQF 403
            +R+MK M+P EL K+SKAA  +EKRKL D KK+A FV+K      LV DCYIC EPLLNNIGT++FGVVSW CRCTV QKAHSAC+FSKICH       CDMC SPM F   R   +   I+F
Sbjct:   24 IRLMKHMKPAELRKISKAAMILEKRKLEDNKKVAAFVAKNDNFVELVGDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSACVFSKICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRF 146
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BLAST of mRNA_H-paniculata_contig2556.6957.1 vs. uniprot
Match: D7G7L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L3_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.920e-35
Identity = 73/148 (49.32%), Postives = 93/148 (62.84%), Query Frame = 2 
Query:   14 EPVADEDRTIVRMMKRMRPEELSKLSKAAAEMEKRKLADKKKLAEFVSKTPELAGLVDDCYICTEPLLNNIGTSEFGVVSWHCRCTVAQKAHSACLFSKICH---GDDMCDMCSSPMRFASPRANRSGVMIQFLEAGDSRSGASRNAQ 448
            +PV       + ++KRMRP+EL  + +AA  + KRK+ D+KK+A F  K      LV+DCYIC EPLLNNIGT++FGVVSW CRCTV QKAHS C+FSKICH   G   CDMC+SPM F       +  MI+F      +  A  N +
Sbjct:   19 QPVEGPREQALNLLKRMRPDELMAIGEAATALAKRKMDDRKKIAAFAEKHDNFVELVEDCYICLEPLLNNIGTTKFGVVSWKCRCTVPQKAHSRCVFSKICHATNGQGKCDMCNSPMEFEKTTRKGTHAMIRFHRDETDKDAAISNEE 166
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BLAST of mRNA_H-paniculata_contig2556.6957.1 vs. uniprot
Match: A0A6H5JF52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF52_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.450e-26
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 2 
Query:  140 LAEFVSKTPELAGLVDDCYICTEPLLNNIGTSEFGVVSWHCRCTVAQKAHSACLFSKICH---GDDMCDMCSSPMRFASPRANRSGVMIQFLEAGDSRSGASRNAQD 451
            +A F  K      LV+DCYIC EPLLNNIGT++FGVVSW CRCTV QKAHS C+FSKICH   G   CDMC SPM F       +  MI+F      R    +NA D
Sbjct:   17 IAAFAEKHDNFVELVEDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSRCVFSKICHASNGQGKCDMCKSPMEFEKTTRKGTHAMIRF-----HRDETDKNAAD 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2556.6957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7L4_ECTSI2.350e-3760.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7L3_ECTSI2.920e-3549.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF52_9PHAE4.450e-2654.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2556contigH-paniculata_contig2556:640..3276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2637
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2556.6957.1prot_H-paniculata_contig2556.6957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2556 689..1285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.2675514-UTR-H-paniculata_contig2556:639..6881622929755.2675514-UTR-H-paniculata_contig2556:639..688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2556 640..688 +
1691480997.201251-UTR-H-paniculata_contig2556:639..6881691480997.201251-UTR-H-paniculata_contig2556:639..688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2556 640..688 +
1622929755.3922024-UTR-H-paniculata_contig2556:1285..32761622929755.3922024-UTR-H-paniculata_contig2556:1285..3276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2556 1286..3276 +
1691480997.2223508-UTR-H-paniculata_contig2556:1285..32761691480997.2223508-UTR-H-paniculata_contig2556:1285..3276Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2556 1286..3276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929755.3773584-CDS-H-paniculata_contig2556:688..12851622929755.3773584-CDS-H-paniculata_contig2556:688..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2556 689..1285 +
1691480997.2134461-CDS-H-paniculata_contig2556:688..12851691480997.2134461-CDS-H-paniculata_contig2556:688..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2556 689..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2556.6957.1

>prot_H-paniculata_contig2556.6957.1 ID=prot_H-paniculata_contig2556.6957.1|Name=mRNA_H-paniculata_contig2556.6957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MMKRMRPEELSKLSKAAAEMEKRKLADKKKLAEFVSKTPELAGLVDDCYI
CTEPLLNNIGTSEFGVVSWHCRCTVAQKAHSACLFSKICHGDDMCDMCSS
PMRFASPRANRSGVMIQFLEAGDSRSGASRNAQDQDQDQASELENYQQEE
IDNDDDDEEEEQEQEEQEQEEGGDEPQPPVLRRSLRITRRVGRVDSSD*
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mRNA from alignment at H-paniculata_contig2556:640..3276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2556.6957.1 ID=mRNA_H-paniculata_contig2556.6957.1|Name=mRNA_H-paniculata_contig2556.6957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2637bp|location=Sequence derived from alignment at H-paniculata_contig2556:640..3276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAGACGCGAGGAACCGGTCGCAGACGAAGATCGCACAATTGTAAGAA
TGATGAAACGAATGCGACCGGAGGAGCTGAGCAAGCTGAGCAAAGCCGCG
GCAGAGATGGAGAAGCGCAAGCTGGCAGACAAGAAGAAGCTGGCCGAGTT
TGTGAGCAAGACGCCCGAACTAGCAGGCCTGGTGGACGACTGCTACATCT
GCACGGAGCCCCTCCTGAATAATATCGGGACGTCAGAGTTCGGGGTGGTC
TCGTGGCACTGCCGGTGCACGGTCGCGCAGAAAGCGCATTCGGCGTGCCT
GTTCTCCAAGATCTGTCACGGGGATGACATGTGCGATATGTGCAGCTCGC
CTATGCGCTTCGCCAGCCCGCGGGCGAACCGAAGCGGCGTCATGATCCAA
TTTTTGGAGGCGGGGGATTCTCGTTCAGGTGCTTCGAGGAATGCTCAGGA
TCAGGATCAGGATCAGGCGTCTGAATTGGAAAATTACCAACAGGAGGAAA
TTGATAATGATGATGATGATGAGGAGGAGGAGCAGGAGCAGGAGGAGCAG
GAGCAGGAAGAAGGGGGAGACGAGCCTCAGCCTCCAGTGCTTCGAAGGAG
CCTGCGTATAACGAGGAGGGTAGGGCGGGTCGACAGCAGTGACTAGATTT
AACACGATCTATTTGAGCTGTAAAGCTTCTTTCATATAGGAACCGAATCT
CCGTAAGGGTCAAAACATACTGTAGATTTCGTACATTTACTAGCGACGGA
GTCTTGGAATAGCGAAAACTACGGACGAATGCGTCTACACAATGCTTAGC
CAAGTCTTGATAGCTGGTGAATGCAATCTATCTCTGGTGCAACGGGAGGG
GAAGGGTGGACAGGGCGTCGTTTTACTGATTCGGGGACTTGTTTCGAGTA
TAACGAGAACGGACGAAAATACCATCCACGTGTTTCATACCGTCGTAACG
ACCGAATAATTAACAAGCCCTACCCGCAAAGCTAATAGCTGATAAGGGTG
CGCTCGGCTCCCCAAGGGTTACAATAAATTTCCTAAGGCAGTTGCTCCAC
TTGGTCATGTTCCTGTGGTTCTTATACGGGGTTGAGAGTTTTTTTTTCAG
AATACTTGATTCATATTTACGTTAGGAGAACCGAAAAAAGAGTGGTAGTA
GGCTATTAATGATTTGTTAGTTAAGTACTTCAATATTAGTAGGTAATAAT
ATCTAACTCGACGCGTATAGTATGTACACGATGCGGCGTACCATATGAAT
AGATCCCGGCGACTTGCTTGCTTCCTCGAGAGCGCGAAGCCAATCCGTGT
TTCGTTACATCCTCCGTTTTTTTTTTTTTTTCTTTCTTCCTTGCTTGGTT
TCAATTTTTTTTTTCATGGAGGACATTGTACATAAGGCTGAATTAGGGAG
AGCGCACGGTAGAGAGCCGACCACGAATAGGTCAAGTCAGGATTACGGAT
ATACCTGGTTTCTCCTTGTGCGGATTCGAAAGACATGAAGCGATAGACAT
GCGAGGCCGCGCTGGAAGGGGCGGAGCGGGGCGGCGGAGGGGAATCGGTT
TGTGACATTTTATTTCTGAAAACAGGTCTTCGCTCTGTTGGCTAAAAGTT
TTGACGTCAGCTCTAGTAGCAGGATTGCTCTCTTGTTCTGGGCAGAGGGG
AGTAGGAAAGCCACGTGTTTTTGTTTCCTTTCTAACTGTATGTGGAAAAA
AATATGTGTTTTCGGATGCGCAGAACGCTTTCTGGCTGGTTTTTTTAATT
CATTTATGGGAGGGGGGGGATCGTACTGTAGTTGTTGTTTGATTACATTT
GTCCAATCGGTTCGAAAGGATCGGTCTACGAGTAAAGAAATGCCGCCAAT
AGTTGTGGATGGGCAAGGACCGTCGGCGGGCACAACGTTGAATGGGTAGA
GCCGTCTTATTGTGGCTCGCTGAGATCTCAGTGCTGCAGCATTTATCACT
GCTGGTGGTGCTGCGCACAGTGTGTTTTGTGTGTCGTAATTTACGACGCA
GCGTGCTGCTCGACTTTCAACTGCAGCCACGTAAAGGAAGGATATTGGCG
ACATTGGAGCGGCCGGTTGTTTGTATATAGTTGATCGAGTTCGCGAAAAT
TTATCAACAAAACCCTTGCATGTACACATACACGTAGCTAGTATCTTTGG
ATCAGAGTTGATACGAGCAAGCGACGGTAGGTTCGGTTTTCCTCGAGTTG
TGGATGAGCTTCTGCATAGATGTAATGCTGGTTCCAGCTGTTGGTCGTGA
TGGTGGTGCTTGGAAGGGGGGGATCGTTGTTTTTACGAGGAGTGTTGTGG
TAGATAATTGCGCAGTGTGACGAGCTCATGCTGCGTGTATACCTGATGAT
ACTTGTCTTGGTACCGGCGACTGTGCATCAAGAGTAGAATGTAGGCATCT
CGGCGTCTATCTGCCGTGGCCGTTGGCTATGCTCGTCCATGTAGAGTAGT
ATTTTTTCTGTGTTCGTTGTTGTTCTCGTTTACTGAACCGTGTGGTGTGA
CGCAATTTGATTTTAATCTACTAAATAGAATGTAAAGATCTAGGTACTAT
TTGGTTGCTCCTTCTATGCCCCTTCACTCTCTCATCTACTAAAATTTAGT
ACAGTAACACTACAAATATTGAAAATAGATGAAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2556:640..3276+

>mRNA_H-paniculata_contig2556.6957.1 ID=mRNA_H-paniculata_contig2556.6957.1|Name=mRNA_H-paniculata_contig2556.6957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig2556:640..3276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAAACGAATGCGACCGGAGGAGCTGAGCAAGCTGAGCAAAGCCGC
GGCAGAGATGGAGAAGCGCAAGCTGGCAGACAAGAAGAAGCTGGCCGAGT
TTGTGAGCAAGACGCCCGAACTAGCAGGCCTGGTGGACGACTGCTACATC
TGCACGGAGCCCCTCCTGAATAATATCGGGACGTCAGAGTTCGGGGTGGT
CTCGTGGCACTGCCGGTGCACGGTCGCGCAGAAAGCGCATTCGGCGTGCC
TGTTCTCCAAGATCTGTCACGGGGATGACATGTGCGATATGTGCAGCTCG
CCTATGCGCTTCGCCAGCCCGCGGGCGAACCGAAGCGGCGTCATGATCCA
ATTTTTGGAGGCGGGGGATTCTCGTTCAGGTGCTTCGAGGAATGCTCAGG
ATCAGGATCAGGATCAGGCGTCTGAATTGGAAAATTACCAACAGGAGGAA
ATTGATAATGATGATGATGATGAGGAGGAGGAGCAGGAGCAGGAGGAGCA
GGAGCAGGAAGAAGGGGGAGACGAGCCTCAGCCTCCAGTGCTTCGAAGGA
GCCTGCGTATAACGAGGAGGGTAGGGCGGGTCGACAGCAGTGACTAGATG
ATGAAACGAATGCGACCGGAGGAGCTGAGCAAGCTGAGCAAAGCCGCGGC
AGAGATGGAGAAGCGCAAGCTGGCAGACAAGAAGAAGCTGGCCGAGTTTG
TGAGCAAGACGCCCGAACTAGCAGGCCTGGTGGACGACTGCTACATCTGC
ACGGAGCCCCTCCTGAATAATATCGGGACGTCAGAGTTCGGGGTGGTCTC
GTGGCACTGCCGGTGCACGGTCGCGCAGAAAGCGCATTCGGCGTGCCTGT
TCTCCAAGATCTGTCACGGGGATGACATGTGCGATATGTGCAGCTCGCCT
ATGCGCTTCGCCAGCCCGCGGGCGAACCGAAGCGGCGTCATGATCCAATT
TTTGGAGGCGGGGGATTCTCGTTCAGGTGCTTCGAGGAATGCTCAGGATC
AGGATCAGGATCAGGCGTCTGAATTGGAAAATTACCAACAGGAGGAAATT
GATAATGATGATGATGATGAGGAGGAGGAGCAGGAGCAGGAGGAGCAGGA
GCAGGAAGAAGGGGGAGACGAGCCTCAGCCTCCAGTGCTTCGAAGGAGCC
TGCGTATAACGAGGAGGGTAGGGCGGGTCGACAGCAGTGACTAG
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