mRNA_H-paniculata_contig11077.696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11077.696.1
Unique NamemRNA_H-paniculata_contig11077.696.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 112 bits (281), Expect = 7.610e-27
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            +++WAEAV ++VY LNR  TR  NG TPY  W+G  P +DHLR+F C  Y      +R KL  KA  G+  GY  +  GYR+YN K + V LSRNV+FDE
Sbjct:  468 KKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYNLKTEKVILSRNVKFDE 567
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 107 bits (266), Expect = 8.000e-25
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            +++WAEAV +AVY LNR PT+     TPY  W G  P + HL+VF C  Y      +R KL +KA  GV  GY  +  GYRIYNP    V LSR+V+FDE
Sbjct:  418 KKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1U8MHG7_GOSHI (uncharacterized protein LOC107937785 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MHG7_GOSHI)

HSP 1 Score: 106 bits (264), Expect = 1.520e-24
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            +  Q+WAEAV ++VY LNR PTR     TP+  WH   P + HL+VF C  Y +  +++R KL  +A  G+  GY+ +  GYR+Y+P  K V +SR+V+FDE
Sbjct:  700 LSSQFWAEAVNTSVYLLNRLPTRAIKDKTPFEAWHRVKPVVTHLKVFGCVCYALIPVEKRTKLKGRATPGIFVGYNSNKKGYRVYDPTAKKVLVSRDVKFDE 801
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J5ZME6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZME6_9ROSI)

HSP 1 Score: 103 bits (258), Expect = 9.430e-24
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:   13 YWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            +WAEAV ++VY LNR PT      TP+  WHG  P + HL+VF C  Y    +++R+KL ++A   +  GY     GYR+YNP  K + +SR+V+FDE
Sbjct:  118 FWAEAVNTSVYLLNRLPTHAVKDKTPFEAWHGLKPTVSHLKVFGCVCYAHIPVEKRNKLEERAVPVIFVGYSSTKKGYRVYNPSTKGILVSRDVKFDE 215
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J5Y6F8_9ROSI (Integrase catalytic domain-containing protein n=4 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6F8_9ROSI)

HSP 1 Score: 103 bits (258), Expect = 9.660e-24
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:   13 YWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            +WAEAV ++VY LNR PT      TP+  WHG  P + HL+VF C  Y    +++R+KL ++A   +  GY     GYR+YNP  K + +SR+V+FDE
Sbjct:  642 FWAEAVNTSVYLLNRLPTHAVKDKTPFEAWHGLKPTVSHLKVFGCVCYAHIPVEKRNKLEERAVPVIFVGYSSTKKGYRVYNPSTKGILVSRDVKFDE 739
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 99.4 bits (246), Expect = 1.540e-23
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            +++WAEAV +AVY LNR PT+     TP   W G+ P +DH R+F C  Y     Q+RHKL +K   G+  GY     GY  +N K + +  SR+V+FDE
Sbjct:  116 KKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDE 215
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: UPI00064D8DA3 (uncharacterized protein LOC105973146 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064D8DA3)

HSP 1 Score: 103 bits (256), Expect = 1.580e-23
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            M  ++WAEAV  AVY  NR+PT+     TP   W G+ P + HLRVF   AYG    Q+R KL D++   V  GYD +  GY++YNP N  + +SR+V FDE
Sbjct:  350 MPNEFWAEAVACAVYLANRSPTKDVENQTPLEAWSGKKPSVHHLRVFGSIAYGHVPAQERSKLDDRSAKYVFIGYDLNSKGYKLYNPANGKIVVSRDVEFDE 451
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J6CZM8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CZM8_9ROSI)

HSP 1 Score: 103 bits (256), Expect = 1.730e-23
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   10 QYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            ++WAEAV ++VY LN+ PTR  N  TP+  W+G  P + HL+VF C  Y +   ++R KL  ++  G+  GY     GYR+Y+P  K + +SR+++FDE
Sbjct:   14 KFWAEAVNTSVYLLNKLPTRAVNDKTPFEAWYGLKPSVSHLKVFGCMCYALIPAERRTKLERRSAPGIFVGYSSTKKGYRVYDPSTKKILVSRDIKFDE 112
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 103 bits (256), Expect = 1.800e-23
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:    1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            +G+++WAEA+ +A Y +NR+P+R     TPY  WHGE P L HLRVF C+A+     Q+R KL  K+   +  GY ED  GYR+ +P  K V  SR+V F E
Sbjct:  578 LGKEFWAEAIVTACYLINRSPSRALGERTPYEVWHGEKPDLSHLRVFGCSAWAHIPKQRRKKLDPKSERLIFIGYPEDRRGYRLLDPVTKRVTNSRDVHFVE 679
[Close]
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 102 bits (255), Expect = 2.470e-23
Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306
            R +WAEAVR AVY LNR PT+     TP   W G+ P + HL++F C AY     Q R KL D+    +  GYDE    YR+YNP  K + +SR+V FDE
Sbjct:  469 RNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 568
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3HGA4_COCAP7.610e-2750.00Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A1R3HQR7_COCAP8.000e-2549.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A1U8MHG7_GOSHI1.520e-2444.12uncharacterized protein LOC107937785 n=2 Tax=Gossy... [more]
A0A8J5ZME6_9ROSI9.430e-2443.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5Y6F8_9ROSI9.660e-2443.88Integrase catalytic domain-containing protein n=4 ... [more]
A0A2I0WJT9_9ASPA1.540e-2343.00Retrovirus-related Pol polyprotein from transposon... [more]
UPI00064D8DA31.580e-2346.08uncharacterized protein LOC105973146 n=1 Tax=Eryth... [more]
A0A8J6CZM8_9ROSI1.730e-2341.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI1.800e-2346.08Integrase catalytic domain-containing protein (Fra... [more]
A0A6A3C4D2_HIBSY2.470e-2347.00FAD-binding Berberine family protein n=1 Tax=Hibis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11077contigH-paniculata_contig11077:4303..4608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score103.6
Seed ortholog evalue5.6e-20
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.6925714-CDS-H-paniculata_contig11077:4302..46081622928814.6925714-CDS-H-paniculata_contig11077:4302..4608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11077 4303..4608 +
1691480630.5325708-CDS-H-paniculata_contig11077:4302..46081691480630.5325708-CDS-H-paniculata_contig11077:4302..4608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11077 4303..4608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11077.696.1prot_H-paniculata_contig11077.696.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11077 4303..4608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11077.696.1

>prot_H-paniculata_contig11077.696.1 ID=prot_H-paniculata_contig11077.696.1|Name=mRNA_H-paniculata_contig11077.696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCT
AYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRF
DE
back to top

mRNA from alignment at H-paniculata_contig11077:4303..4608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11077.696.1 ID=mRNA_H-paniculata_contig11077.696.1|Name=mRNA_H-paniculata_contig11077.696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig11077:4303..4608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCGTCAATATTGGGCGGAAGCGGTGCGCTCGGCGGTATACTGCCT
AAATCGTGCCCCGACGCGACCACACAACGGGGGAACGCCGTACGGAAAAT
GGCACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCGACTGCACG
GCGTATGGTATGTTCCAGTTGCAACAGAGACACAAGCTCGGCGATAAAGC
ATGGGCGGGGGTGCTTTGGGGGTACGACGAGGACTTCCCGGGTTATCGCA
TATATAACCCGAAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAGATTT
GACGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11077:4303..4608+

>mRNA_H-paniculata_contig11077.696.1 ID=mRNA_H-paniculata_contig11077.696.1|Name=mRNA_H-paniculata_contig11077.696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig11077:4303..4608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCGTCAATATTGGGCGGAAGCGGTGCGCTCGGCGGTATACTGCCT
AAATCGTGCCCCGACGCGACCACACAACGGGGGAACGCCGTACGGAAAAT
GGCACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCGACTGCACG
GCGTATGGTATGTTCCAGTTGCAACAGAGACACAAGCTCGGCGATAAAGC
ATGGGCGGGGGTGCTTTGGGGGTACGACGAGGACTTCCCGGGTTATCGCA
TATATAACCCGAAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAGATTT
GACGAAATGGGGCGTCAATATTGGGCGGAAGCGGTGCGCTCGGCGGTATA
CTGCCTAAATCGTGCCCCGACGCGACCACACAACGGGGGAACGCCGTACG
GAAAATGGCACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCGAC
TGCACGGCGTATGGTATGTTCCAGTTGCAACAGAGACACAAGCTCGGCGA
TAAAGCATGGGCGGGGGTGCTTTGGGGGTACGACGAGGACTTCCCGGGTT
ATCGCATATATAACCCGAAAAACAAGAGCGTCCAGTTGAGCAGGAACGTG
AGATTTGACGAA
back to top