prot_H-paniculata_contig11077.696.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig11077.696.1
Unique Name	prot_H-paniculata_contig11077.696.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	102

Homology

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 112 bits (281), Expect = 7.610e-27
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query:    3 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            +++WAEAV ++VY LNR  TR  NG TPY  W+G  P +DHLR+F C  Y      +R KL  KA  G+  GY  +  GYR+YN K + V LSRNV+FDE
Sbjct:  468 KKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYNLKTEKVILSRNVKFDE 567

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 107 bits (266), Expect = 8.000e-25
Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query:    3 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            +++WAEAV +AVY LNR PT+     TPY  W G  P + HL+VF C  Y      +R KL +KA  GV  GY  +  GYRIYNP    V LSR+V+FDE
Sbjct:  418 KKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1U8MHG7_GOSHI (uncharacterized protein LOC107937785 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MHG7_GOSHI)

HSP 1 Score: 106 bits (264), Expect = 1.520e-24
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 0

Query:    1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            +  Q+WAEAV ++VY LNR PTR     TP+  WH   P + HL+VF C  Y +  +++R KL  +A  G+  GY+ +  GYR+Y+P  K V +SR+V+FDE
Sbjct:  700 LSSQFWAEAVNTSVYLLNRLPTRAIKDKTPFEAWHRVKPVVTHLKVFGCVCYALIPVEKRTKLKGRATPGIFVGYNSNKKGYRVYDPTAKKVLVSRDVKFDE 801

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J5ZME6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZME6_9ROSI)

HSP 1 Score: 103 bits (258), Expect = 9.430e-24
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0

Query:    5 YWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            +WAEAV ++VY LNR PT      TP+  WHG  P + HL+VF C  Y    +++R+KL ++A   +  GY     GYR+YNP  K + +SR+V+FDE
Sbjct:  118 FWAEAVNTSVYLLNRLPTHAVKDKTPFEAWHGLKPTVSHLKVFGCVCYAHIPVEKRNKLEERAVPVIFVGYSSTKKGYRVYNPSTKGILVSRDVKFDE 215

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J5Y6F8_9ROSI (Integrase catalytic domain-containing protein n=4 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6F8_9ROSI)

HSP 1 Score: 103 bits (258), Expect = 9.660e-24
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0

Query:    5 YWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            +WAEAV ++VY LNR PT      TP+  WHG  P + HL+VF C  Y    +++R+KL ++A   +  GY     GYR+YNP  K + +SR+V+FDE
Sbjct:  642 FWAEAVNTSVYLLNRLPTHAVKDKTPFEAWHGLKPTVSHLKVFGCVCYAHIPVEKRNKLEERAVPVIFVGYSSTKKGYRVYNPSTKGILVSRDVKFDE 739

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 99.4 bits (246), Expect = 1.540e-23
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query:    3 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            +++WAEAV +AVY LNR PT+     TP   W G+ P +DH R+F C  Y     Q+RHKL +K   G+  GY     GY  +N K + +  SR+V+FDE
Sbjct:  116 KKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDE 215

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: UPI00064D8DA3 (uncharacterized protein LOC105973146 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064D8DA3)

HSP 1 Score: 103 bits (256), Expect = 1.580e-23
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 0

Query:    1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            M  ++WAEAV  AVY  NR+PT+     TP   W G+ P + HLRVF   AYG    Q+R KL D++   V  GYD +  GY++YNP N  + +SR+V FDE
Sbjct:  350 MPNEFWAEAVACAVYLANRSPTKDVENQTPLEAWSGKKPSVHHLRVFGSIAYGHVPAQERSKLDDRSAKYVFIGYDLNSKGYKLYNPANGKIVVSRDVEFDE 451

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J6CZM8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CZM8_9ROSI)

HSP 1 Score: 103 bits (256), Expect = 1.730e-23
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 0

Query:    4 QYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            ++WAEAV ++VY LN+ PTR  N  TP+  W+G  P + HL+VF C  Y +   ++R KL  ++  G+  GY     GYR+Y+P  K + +SR+++FDE
Sbjct:   14 KFWAEAVNTSVYLLNKLPTRAVNDKTPFEAWYGLKPSVSHLKVFGCMCYALIPAERRTKLERRSAPGIFVGYSSTKKGYRVYDPSTKKILVSRDIKFDE 112

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 103 bits (256), Expect = 1.800e-23
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0

Query:    1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            +G+++WAEA+ +A Y +NR+P+R     TPY  WHGE P L HLRVF C+A+     Q+R KL  K+   +  GY ED  GYR+ +P  K V  SR+V F E
Sbjct:  578 LGKEFWAEAIVTACYLINRSPSRALGERTPYEVWHGEKPDLSHLRVFGCSAWAHIPKQRRKKLDPKSERLIFIGYPEDRRGYRLLDPVTKRVTNSRDVHFVE 679

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BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 102 bits (255), Expect = 2.470e-23
Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 0

Query:    3 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 102
            R +WAEAVR AVY LNR PT+     TP   W G+ P + HL++F C AY     Q R KL D+    +  GYDE    YR+YNP  K + +SR+V FDE
Sbjct:  469 RNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 568

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1R3HGA4_COCAP	7.610e-27	50.00	Integrase, catalytic core n=1 Tax=Corchorus capsul...	[more]
A0A1R3HQR7_COCAP	8.000e-25	49.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A1U8MHG7_GOSHI	1.520e-24	44.12	uncharacterized protein LOC107937785 n=2 Tax=Gossy...	[more]
A0A8J5ZME6_9ROSI	9.430e-24	43.88	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A8J5Y6F8_9ROSI	9.660e-24	43.88	Integrase catalytic domain-containing protein n=4 ...	[more]
A0A2I0WJT9_9ASPA	1.540e-23	43.00	Retrovirus-related Pol polyprotein from transposon...	[more]
UPI00064D8DA3	1.580e-23	46.08	uncharacterized protein LOC105973146 n=1 Tax=Eryth...	[more]
A0A8J6CZM8_9ROSI	1.730e-23	41.41	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5GGZ1_9HEMI	1.800e-23	46.08	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6A3C4D2_HIBSY	2.470e-23	47.00	FAD-binding Berberine family protein n=1 Tax=Hibis...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 1..101
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..101
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..39

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig11077	contig	H-paniculata_contig11077:4303..4608 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11077.696.1	mRNA_H-paniculata_contig11077.696.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig11077 4303..4608 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig11077.696.1 ID=prot_H-paniculata_contig11077.696.1|Name=mRNA_H-paniculata_contig11077.696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCT
AYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRF
DE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf