mRNA_H-paniculata_contig25541.6954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25541.6954.1
Unique NamemRNA_H-paniculata_contig25541.6954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.420e-17
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEE-GVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED+KD+++ +M+ +K LTV  V  ++N+ +   E G         + + V  +T H WMI L CKY+R T S+YTDGH K +++ YR +YID   +L+ R PL
Sbjct:  159 IMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 265
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.430e-17
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEE-GVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED+KD+++ +M+ +K LTV  V  ++N+ +   E G         + + V  +T H WMI L CKY+R T S+YTDGH K +++ YR +YID   +L+ R PL
Sbjct:  299 IMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 405
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.060e-17
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEE-GVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED+KD+++ +M+ +K LTV  V  ++N+ +   E G         + + V  +T H WMI L CKY+R T S+YTDGH K +++ YR +YID   +L+ R PL
Sbjct:  237 IMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFAYEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 343
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.100e-16
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEE-GVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED+KD+++ +M+ +K LTV  V  ++N+ +   E G         + + V   T H W+I L CKY+R T S+YTDGH K +++ YR +YID   +L+ R PL
Sbjct:  257 IMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSHQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 363
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.970e-15
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEIL---IEEGVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED KD+++ +M+ +K LTV  V  ++N+ +    I +   +L+ + N+ V    +T H WMI L CKY+R T S+YTDGH K +++ YR +YID   +L+   PL
Sbjct:  414 IMSEEDPKDELIKWMRTQKRLTVKDVQNYINQWLFANQIGDLSRLLSYQVNLPV--SMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALWQPL 520
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.360e-14
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEEGVTMLAE--KTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED+K  +L +M  +   T+  V K++N  +L ++    L+      + + V  ST+H WMI+L C+Y+R T S+YTD H K  ++EYR +YI+   +++ R PL
Sbjct:  298 IMSEEDLKSALLAWMISQPRFTIKEVCKYINGPLLQDDKEEDLSRLHAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPL 405
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.200e-14
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:   13 EDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIE--EGVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            ED+K ++L +M     +T++ V K++N  +L +  E ++ L     + + V  ST H WMI+L CKY+R T S+YTD H K  ++EYR +YI+   +++ R PL
Sbjct:   14 EDLKSELLAWMISPPRVTIEDVCKYINGPLLQDDKEDLSRL-HAYQVNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPL 116
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BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.140e-14
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIE--EGVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED+K  +L +M  +   T+  V K++N  +L +  E ++ L     + + V  ST H WMI+L C+Y+R T S+YTD H K  ++EYR +YI+   +++ R PL
Sbjct:  345 IMSEEDLKSALLAWMISQPRFTIKDVCKYINGPLLQDDKEDLSRL-HAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPL 451
[Close]
BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.380e-12
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEE-GVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQ 276
            I+  ED+KD+++ +M+ +K LTV  V  ++N+ +   E G         + + V  +T H WMI L CKY+R T S+YTDGH K +++ YR +
Sbjct:  348 IMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGK 440
[Close]
BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.850e-12
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:    1 ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEEGVTMLAEKTNIYVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTELSERMPL 318
            I+  ED+KD+++ +M+ +K LTV+                          + V  +T H WMI L CKY+R T S+YTDGH K +++ YR +YID   +L+ R PL
Sbjct:  355 IMSEEDLKDELIKWMRTQKRLTVN--------------------------LPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 434
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25541.6954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JRV8_9PHAE3.420e-1739.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE6.430e-1739.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE9.060e-1739.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI16_9PHAE4.100e-1638.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE6.970e-1538.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE2.360e-1435.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXL0_9PHAE3.200e-1437.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE6.140e-1436.11Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE1.380e-1237.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX8_9PHAE1.850e-1235.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25541contigH-paniculata_contig25541:42..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.91254-CDS-H-paniculata_contig25541:41..3621622929754.91254-CDS-H-paniculata_contig25541:41..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25541 42..362 -
1691480997.0308409-CDS-H-paniculata_contig25541:41..3621691480997.0308409-CDS-H-paniculata_contig25541:41..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25541 42..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25541.6954.1prot_H-paniculata_contig25541.6954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25541 42..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25541.6954.1

>prot_H-paniculata_contig25541.6954.1 ID=prot_H-paniculata_contig25541.6954.1|Name=mRNA_H-paniculata_contig25541.6954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
ILLNEDIKDKVLTYMKEEKHLTVDSVWKHLNEEILIEEGVTMLAEKTNIY
VLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQYIDTLTEL
SERMPL*
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mRNA from alignment at H-paniculata_contig25541:42..362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25541.6954.1 ID=mRNA_H-paniculata_contig25541.6954.1|Name=mRNA_H-paniculata_contig25541.6954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig25541:42..362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCCTAAACGAGGACATCAAGGACAAAGTTTTGACCTACATGAAGGA
GGAAAAACATCTGACCGTTGACAGCGTATGGAAGCATCTGAACGAAGAGA
TACTCATAGAAGAAGGTGTAACGATGCTAGCTGAGAAGACCAATATTTAC
GTACTTGTCGGCCGTAGCACTGTGCACCGATGGATGATCAAACTAAGATG
CAAATACAAACGACACACGAGCTCCTACTACACGGACGGTCACAACAAGC
TAAATATATTGGAATACCGTAGCCAGTACATAGACACCCTCACCGAGTTA
TCTGAACGCATGCCGTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25541:42..362-

>mRNA_H-paniculata_contig25541.6954.1 ID=mRNA_H-paniculata_contig25541.6954.1|Name=mRNA_H-paniculata_contig25541.6954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig25541:42..362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCCTAAACGAGGACATCAAGGACAAAGTTTTGACCTACATGAAGGA
GGAAAAACATCTGACCGTTGACAGCGTATGGAAGCATCTGAACGAAGAGA
TACTCATAGAAGAAGGTGTAACGATGCTAGCTGAGAAGACCAATATTTAC
GTACTTGTCGGCCGTAGCACTGTGCACCGATGGATGATCAAACTAAGATG
CAAATACAAACGACACACGAGCTCCTACTACACGGACGGTCACAACAAGC
TAAATATATTGGAATACCGTAGCCAGTACATAGACACCCTCACCGAGTTA
TCTGAACGCATGCCGTTGTAGATACTCCTAAACGAGGACATCAAGGACAA
AGTTTTGACCTACATGAAGGAGGAAAAACATCTGACCGTTGACAGCGTAT
GGAAGCATCTGAACGAAGAGATACTCATAGAAGAAGGTGTAACGATGCTA
GCTGAGAAGACCAATATTTACGTACTTGTCGGCCGTAGCACTGTGCACCG
ATGGATGATCAAACTAAGATGCAAATACAAACGACACACGAGCTCCTACT
ACACGGACGGTCACAACAAGCTAAATATATTGGAATACCGTAGCCAGTAC
ATAGACACCCTCACCGAGTTATCTGAACGCATGCCGTTGTAG
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