mRNA_H-paniculata_contig2554.6953.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2554.6953.1
Unique NamemRNA_H-paniculata_contig2554.6953.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2554.6953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2554contigH-paniculata_contig2554:12704..13198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size495
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2554.6953.1prot_H-paniculata_contig2554.6953.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2554 12857..13162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.786789-UTR-H-paniculata_contig2554:12703..128561622929754.786789-UTR-H-paniculata_contig2554:12703..12856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2554 12704..12856 +
1691480996.9968207-UTR-H-paniculata_contig2554:12703..128561691480996.9968207-UTR-H-paniculata_contig2554:12703..12856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2554 12704..12856 +
1622929754.8233447-UTR-H-paniculata_contig2554:13162..131981622929754.8233447-UTR-H-paniculata_contig2554:13162..13198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2554 13163..13198 +
1691480997.0172305-UTR-H-paniculata_contig2554:13162..131981691480997.0172305-UTR-H-paniculata_contig2554:13162..13198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2554 13163..13198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.8095794-CDS-H-paniculata_contig2554:12856..131621622929754.8095794-CDS-H-paniculata_contig2554:12856..13162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2554 12857..13162 +
1691480997.0073617-CDS-H-paniculata_contig2554:12856..131621691480997.0073617-CDS-H-paniculata_contig2554:12856..13162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2554 12857..13162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2554.6953.1

>prot_H-paniculata_contig2554.6953.1 ID=prot_H-paniculata_contig2554.6953.1|Name=mRNA_H-paniculata_contig2554.6953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MCVRVRIRMCSFLCRECWLPTARFHMVILFSRCVLCVVYMLTRVSSRTDG
CSCHNLPYSVLPHQRSLFCIPLWPMIQATFDFLWRAFFCSVIVFLIKHLF
S*
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mRNA from alignment at H-paniculata_contig2554:12704..13198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2554.6953.1 ID=mRNA_H-paniculata_contig2554.6953.1|Name=mRNA_H-paniculata_contig2554.6953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at H-paniculata_contig2554:12704..13198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGGCGTACGGTAAATGCAGATGCCATGTGTTGTGCGTGTTGAATGCA
CCTATAACGTACTCTTGACGTCGGAGGGTGCTTGTTATACGAGTGTGTCG
CTGTTGGCTGTGTGTGGAAGTCGTTGTTCGTAAGGTGGGTTGGATGGCTT
GTCATGTGCGTTCGCGTGCGTATACGTATGTGCAGCTTTTTGTGCAGAGA
GTGCTGGCTACCTACAGCACGGTTCCACATGGTTATTTTGTTCTCCCGTT
GTGTGTTGTGTGTTGTGTATATGTTGACAAGAGTTTCGTCGCGAACTGAT
GGTTGCTCGTGTCACAACCTACCATATAGCGTGCTTCCCCACCAACGTTC
ACTTTTTTGTATACCACTCTGGCCCATGATACAAGCTACATTTGACTTTT
TGTGGCGTGCGTTTTTCTGCTCGGTAATCGTGTTTTTAATAAAACATTTA
TTTTCATGAAAGCACTTGGAACACGATGATTCCAAGGGTGGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2554:12704..13198+

>mRNA_H-paniculata_contig2554.6953.1 ID=mRNA_H-paniculata_contig2554.6953.1|Name=mRNA_H-paniculata_contig2554.6953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig2554:12704..13198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGTTCGCGTGCGTATACGTATGTGCAGCTTTTTGTGCAGAGAGTG
CTGGCTACCTACAGCACGGTTCCACATGGTTATTTTGTTCTCCCGTTGTG
TGTTGTGTGTTGTGTATATGTTGACAAGAGTTTCGTCGCGAACTGATGGT
TGCTCGTGTCACAACCTACCATATAGCGTGCTTCCCCACCAACGTTCACT
TTTTTGTATACCACTCTGGCCCATGATACAAGCTACATTTGACTTTTTGT
GGCGTGCGTTTTTCTGCTCGGTAATCGTGTTTTTAATAAAACATTTATTT
TCATGAATGTGCGTTCGCGTGCGTATACGTATGTGCAGCTTTTTGTGCAG
AGAGTGCTGGCTACCTACAGCACGGTTCCACATGGTTATTTTGTTCTCCC
GTTGTGTGTTGTGTGTTGTGTATATGTTGACAAGAGTTTCGTCGCGAACT
GATGGTTGCTCGTGTCACAACCTACCATATAGCGTGCTTCCCCACCAACG
TTCACTTTTTTGTATACCACTCTGGCCCATGATACAAGCTACATTTGACT
TTTTGTGGCGTGCGTTTTTCTGCTCGGTAATCGTGTTTTTAATAAAACAT
TTATTTTCATGA
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