mRNA_H-paniculata_contig25539.6952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25539.6952.1
Unique NamemRNA_H-paniculata_contig25539.6952.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 9.960e-42
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 1
Query:   25 GEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVL 315
            GE I+PYY E+LQALHPLF+L+ KGTEGGVVDNAAAAVARMIMAAPAA+PMDQVLPV LSALPLK+DR+ENE VYTCLLGLIH+RHPE L  LD ++
Sbjct:  938 GEVIVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENETVYTCLLGLIHLRHPEALRLLDPIM 1034          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A835ZQ81_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ81_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.930e-30
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 1
Query:   22 SGEAILPYYLEILQALHPLFSLSGKG-TEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVL 315
            +GE+I P+ LE+LQ L P+F  +GKG TEGG++DNAAAAVAR++MAAP AVPM+QVLP LLSALPLK D  ENE VY C++GL+ MRHP  LA L  ++
Sbjct: 1384 AGESITPHVLELLQLLAPIFQKAGKGSTEGGLLDNAAAAVARIVMAAPGAVPMEQVLPALLSALPLKVDAQENETVYGCVIGLLKMRHPAALASLPAIM 1482          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S2D6V2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6V2_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.300e-24
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    4 SVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLA 297
             V+   S E + P+YL +LQ LHPLF +        V+DNAAAAVARM+ A+ A++P  QVLPV L  LPLK D NENEAVY CL GLI MRHP+ +A
Sbjct:   35 GVMALASPETVAPHYLTLLQHLHPLFQMDPT-LHAAVIDNAAAAVARMMTASLASMPTAQVLPVFLGCLPLKDDMNENEAVYACLAGLIEMRHPDAMA 131          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A067CRP9_SAPPC (Importin N-terminal domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRP9_SAPPC)

HSP 1 Score: 103 bits (258), Expect = 1.590e-23
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEF 324
            L +LV +SG ++ P YL++LQALHPLF+      E GVVDNAA+AVA+MIM  P +VP+D V+PV L ALPLKAD  E E+V+TCLLGL+  ++P  L  +  V   F
Sbjct:  919 LGMLVKMSGASLAPQYLQVLQALHPLFA----SEEEGVVDNAASAVAKMIMTHPDSVPLDAVMPVFLKALPLKADFTETESVFTCLLGLLQAQNPVVLNAMPQVAAIF 1022          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7R9Z5S6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z5S6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.150e-22
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   25 GEAILPYYLEILQALHPLFSLS-GKG-TEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLA 297
            GE + P Y +ILQA+ PLF +   +G      VDNAAAAV+RMIMA+P  VPM QVLP LL ALPLK D  EN+ VY CLLGL+ M  P+ +A
Sbjct:   85 GETVAPQYGQILQAISPLFGIDPAQGDASAAAVDNAAAAVSRMIMASPGNVPMSQVLPALLKALPLKNDMTENDTVYKCLLGLLQMNQPDAVA 177          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A1V9ZV71_9STRA (Importin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV71_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.680e-21
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEF 324
            + +LV +SG  +   YL++LQALHPLF    +  + GVVDNAA+AVA+MIMA   AVP+D VLPV L ALPLKAD  E E+V+TCLLGL+  ++P  L  +  V   F
Sbjct:  919 IGMLVKMSGANLASQYLQLLQALHPLF----ESEDEGVVDNAASAVAKMIMAHGEAVPLDAVLPVFLKALPLKADFTETESVFTCLLGLLQAQNPAVLNSMPQVASIF 1022          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S1BKM5_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKM5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.270e-21
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   37 LPYYLEILQALHPLFSLSGKGTEGGV-------VDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARL 303
            +P Y +IL AL PLF L   G  GGV       VDNA AAVARMIMA+P  VP+ QVLP +L+ +PL++D +ENE VY CLLGL+HM HP+ +A +
Sbjct:  966 IPQYPQILTALSPLFVLEKAGPSGGVTDPAGACVDNAVAAVARMIMASPENVPVGQVLPTILANVPLRSDFSENETVYECLLGLLHMNHPDAVANV 1061          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S2VZD1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZD1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.280e-21
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   25 GEAILPYYLEILQALHPLFSLSGKGTEGGV--VDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLAR---LDVVLGEFFSLGGK 342
            G+ I+  Y +ILQA+ PLF+L    ++     +DNAAAA++RMIMA+PA VPM QVLPVLL ALPLK D  ENE VY CLLGL+ M   + +A    +  +  E  S G K
Sbjct:  188 GDLIVTVYPQILQAISPLFALDQNTSDSSAAAIDNAAAAISRMIMASPANVPMGQVLPVLLRALPLKNDMTENETVYQCLLGLLQMNQEDAVANKAEIRRIFTEATSEGSK 298          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A1V9YGZ1_9STRA (Importin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGZ1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.950e-21
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEFF-SLG 336
            L  LV +SG ++   YL+ILQALHPLF    +  + GVVDNAA+AVA+MIM    +VP+D VLPV L ALPLKAD  E E+V+ CLLGL+  ++P  L  +  V   F  SLG
Sbjct:  921 LGTLVKMSGASLSSQYLQILQALHPLF----ESEDEGVVDNAASAVAKMIMTHQESVPLDAVLPVFLKALPLKADFTETESVFNCLLGLLQAQNPAVLNAMPQVAAIFAQSLG 1029          
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Match: A0A7S3XPI9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPI9_HETAK)

HSP 1 Score: 95.1 bits (235), Expect = 1.150e-20
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   46 YLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMIMAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLARLDVVLGEF 324
            Y E+LQAL PLF      T+G   DNAAAAV RM+ +AP AVP++QVLP +L ALPLKAD +EN  VY CL GL+  R P  LA L  +LG +
Sbjct:  308 YPELLQALSPLFQ-EVPNTDGAAADNAAAAVCRMVSSAPGAVPLEQVLPAVLGALPLKADMSENRTVYKCLAGLLSERRPPALAALAQILGVY 399          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25539.6952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIB4_9PHAE9.960e-4280.41Importin N-terminal domain-containing protein n=2 ... [more]
A0A835ZQ81_9STRA2.930e-3063.64Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S2D6V2_9STRA2.300e-2456.12Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CRP9_SAPPC1.590e-2353.70Importin N-terminal domain-containing protein n=2 ... [more]
A0A7R9Z5S6_9STRA4.150e-2256.99Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1V9ZV71_9STRA1.680e-2152.78Importin n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
A0A7S1BKM5_9STRA4.270e-2155.21Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A7S2VZD1_9STRA5.280e-2150.45Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1V9YGZ1_9STRA7.950e-2152.21Importin-like protein n=1 Tax=Achlya hypogyna TaxI... [more]
A0A7S3XPI9_HETAK1.150e-2055.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25539contigH-paniculata_contig25539:191..798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue5.6e-37
Seed eggNOG ortholog2880.D7FQF7
KEGG koko:K20221
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
Ec32 ortholog descriptionImportin-beta, N-terminal domain
Ec32 orthologEc-01_006300.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.7288656-CDS-H-paniculata_contig25539:190..3731622929754.7288656-CDS-H-paniculata_contig25539:190..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25539 191..373 +
1691480996.9733298-CDS-H-paniculata_contig25539:190..3731691480996.9733298-CDS-H-paniculata_contig25539:190..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25539 191..373 +
1622929754.7457857-CDS-H-paniculata_contig25539:636..7981622929754.7457857-CDS-H-paniculata_contig25539:636..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25539 637..798 +
1691480996.9863975-CDS-H-paniculata_contig25539:636..7981691480996.9863975-CDS-H-paniculata_contig25539:636..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25539 637..798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25539.6952.1prot_H-paniculata_contig25539.6952.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25539 191..798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25539.6952.1

>prot_H-paniculata_contig25539.6952.1 ID=prot_H-paniculata_contig25539.6952.1|Name=mRNA_H-paniculata_contig25539.6952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
LSVLVFLSGEAILPYYLEILQALHPLFSLSGKGTEGGVVDNAAAAVARMI
MAAPAAVPMDQVLPVLLSALPLKADRNENEAVYTCLLGLIHMRHPETLAR
LDVVLGEFFSLGGK*
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mRNA from alignment at H-paniculata_contig25539:191..798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25539.6952.1 ID=mRNA_H-paniculata_contig25539.6952.1|Name=mRNA_H-paniculata_contig25539.6952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=608bp|location=Sequence derived from alignment at H-paniculata_contig25539:191..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCTGTACTTGTATTTCTTTCAGGAGAAGCGATCTTACCGTACTATCT GGAAATACTTCAAGCGTTGCACCCGTTGTTTTCTCTTAGCGGAAAGGGCA CAGAAGGCGGTGTTGTGGACAACGCGGCCGCGGCGGTAGCCCGAATGATA ATGGCTGCGCCGGCAGCTGTCCCAATGGATCAGGTACGTAAACCAAATAG GCCATTTGAAGAAAAAGTATATTTTAGACTGACGAGGTTAACGCTGAGTT ACAACACAATTAGTGCCATTCGATCGTCTCTTTTTCGACCCAATGATTCT CGGCTCAATATTTTTTTCGAAAGGATGTCTTCATGTAAAGAGACCCCTCC CTTCCCTTTCCCCTTTCCAGCTTTCCTCATTTTGTCCTAACTTCCCTTGC CATTCACACCCATACATATATTTTTCCTTTATTTTGGCGAAACCAGGTAC TTCCGGTGTTGCTCTCCGCTCTGCCTTTAAAGGCAGACCGAAACGAAAAT GAGGCTGTGTATACTTGTTTGTTGGGGCTTATTCATATGCGACATCCTGA AACACTGGCGCGGCTCGACGTGGTGTTGGGTGAGTTTTTCTCCTTGGGGG GGAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig25539:191..798+

>mRNA_H-paniculata_contig25539.6952.1 ID=mRNA_H-paniculata_contig25539.6952.1|Name=mRNA_H-paniculata_contig25539.6952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig25539:191..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCTGTACTTGTATTTCTTTCAGGAGAAGCGATCTTACCGTACTATCT
GGAAATACTTCAAGCGTTGCACCCGTTGTTTTCTCTTAGCGGAAAGGGCA
CAGAAGGCGGTGTTGTGGACAACGCGGCCGCGGCGGTAGCCCGAATGATA
ATGGCTGCGCCGGCAGCTGTCCCAATGGATCAGCTCTCTGTACTTGTATT
TCTTTCAGGAGAAGCGATCTTACCGTACTATCTGGAAATACTTCAAGCGT
TGCACCCGTTGTTTTCTCTTAGCGGAAAGGGCACAGAAGGCGGTGTTGTG
GACAACGCGGCCGCGGCGGTAGCCCGAATGATAATGGCTGCGCCGGCAGC
TGTCCCAATGGATCAGGTACTTCCGGTGTTGCTCTCCGCTCTGCCTTTAA
AGGCAGACCGAAACGAAAATGAGGCTGTGTATACTTGTTTGTTGGGGCTT
ATTCATATGCGACATCCTGAAACACTGGCGCGGCTCGACGTGGTGTTGGG
TGAGTTTTTCTCCTTGGGGGGGAAGTGAGTACTTCCGGTGTTGCTCTCCG
CTCTGCCTTTAAAGGCAGACCGAAACGAAAATGAGGCTGTGTATACTTGT
TTGTTGGGGCTTATTCATATGCGACATCCTGAAACACTGGCGCGGCTCGA
CGTGGTGTTGGGTGAGTTTTTCTCCTTGGGGGGGAAGTGA
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