mRNA_H-paniculata_contig25520.6950.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25520.6950.1
Unique NamemRNA_H-paniculata_contig25520.6950.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: D7FS91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS91_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.190e-44
Identity = 70/76 (92.11%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 MVQYYGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRY 228
            MVQYYG+RTYARFYALETIARVPYFGYLCVLHLYETLG+WR+AEYLKVHFAESYNELHHLLIMEELGGN+LF+DR+
Sbjct:   97 MVQYYGERTYARFYALETIARVPYFGYLCVLHLYETLGKWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDRW 172          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: A0A835Z1V4_9STRA (Putative alternative oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.860e-35
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1
Query:   10 YYGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRYL 231
            YYG R YARFYALETIARVPYF YL VLHLYETLG WR+A+YLK+HFAES+NELHHLLIMEELGGN  F DR+L
Sbjct:   38 YYGQRDYARFYALETIARVPYFSYLSVLHLYETLGWWRQADYLKIHFAESWNELHHLLIMEELGGNDKFFDRWL 111          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: A0A7S2LGX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGX7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.830e-34
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1
Query:   19 DRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRYL 231
            DR YARFYALETIARVPYF YL VLHLYETLG+WR+A+YLK+HFAES+NELHHLLIMEELGGN  F DR+L
Sbjct:   93 DRAYARFYALETIARVPYFSYLSVLHLYETLGRWRRAKYLKLHFAESWNELHHLLIMEELGGNDRFLDRFL 163          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: A0A7S2UN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN98_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.290e-34
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 1
Query:   19 DRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRY 228
            DR+YARFYALETIAR+PYF YL VLHLYETLG+WR+AEY+K+HFAES+NELHHLLIMEELGGN  F+DR+
Sbjct:  136 DRSYARFYALETIARMPYFSYLSVLHLYETLGKWRRAEYMKIHFAESWNELHHLLIMEELGGNARFQDRF 205          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: A0A0S3UCX6_9CYAN (Alternative oxidase n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A0S3UCX6_9CYAN)

HSP 1 Score: 123 bits (309), Expect = 1.570e-33
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   13 YGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRY 228
            YG+R+YARFY LETIARVPYF YL VLHLYETLG WRKA++LKVHFAE++NELHHLLIME LGGN L+ DR+
Sbjct:   20 YGNRSYARFYVLETIARVPYFSYLSVLHLYETLGYWRKADWLKVHFAETWNELHHLLIMESLGGNRLWIDRF 91          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: K0SXL9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SXL9_THAOC)

HSP 1 Score: 124 bits (310), Expect = 2.430e-33
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:   19 DRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRYL 231
            DR YARFYALETIARVPYF YL VLHLYETLG+WR+A+YLK+HFAES+NELHHLLIMEELGG+  F DR+L
Sbjct:   64 DRAYARFYALETIARVPYFSYLSVLHLYETLGKWRRAKYLKLHFAESWNELHHLLIMEELGGSERFLDRFL 134          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: A0A098THC8_9CYAN (Plastoquinol terminal oxidase n=2 Tax=Neosynechococcus TaxID=1501143 RepID=A0A098THC8_9CYAN)

HSP 1 Score: 122 bits (306), Expect = 4.330e-33
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   13 YGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRYL 231
            YG+R+YARFY LETIARVPYF YL VLHLYETLG WRKA+ LKVHFAE++NELHHLLIME LGGN L+ DR++
Sbjct:   17 YGNRSYARFYVLETIARVPYFSYLSVLHLYETLGFWRKADLLKVHFAETWNELHHLLIMESLGGNRLWGDRFI 89          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: UPI001F554B9B (plastoquinol terminal oxidase n=5 Tax=Nostocaceae TaxID=1162 RepID=UPI001F554B9B)

HSP 1 Score: 120 bits (300), Expect = 3.640e-32
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   13 YGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRYL 231
            YG+R+YARFY LETIARVPYF YL VLHLYETLG WR+A+ LKVHFAE++NELHHLLIME LGGN  + DR+L
Sbjct:   20 YGNRSYARFYVLETIARVPYFSYLSVLHLYETLGFWRRADLLKVHFAETWNELHHLLIMESLGGNRYWGDRFL 92          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: C5YA16_SORBI (Ubiquinol oxidase n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C5YA16_SORBI)

HSP 1 Score: 120 bits (301), Expect = 3.710e-32
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   13 YGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRYL 231
            Y DR YARF+ LETIARVPYFG++ VLHLYET G WR+A+Y+KVHFA+S+NE HHLLIMEELGGN L+ DR+L
Sbjct:   19 YRDRNYARFFVLETIARVPYFGFISVLHLYETFGWWRRADYIKVHFAQSWNEFHHLLIMEELGGNALWIDRFL 91          
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Match: UPI001D13DFD3 (plastoquinol terminal oxidase n=2 Tax=Tychonema TaxID=54312 RepID=UPI001D13DFD3)

HSP 1 Score: 119 bits (299), Expect = 5.020e-32
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   13 YGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHFAESYNELHHLLIMEELGGNLLFKDRYL 231
            YG+R+Y RFY LETIARVPYF YL VLHLYETLG WRKA+ LKVHFAES+NELHHLLIME LGG+ L+ DR++
Sbjct:   20 YGNRSYPRFYMLETIARVPYFSYLSVLHLYETLGYWRKADLLKVHFAESWNELHHLLIMESLGGDRLWIDRFI 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25520.6950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS91_ECTSI1.190e-4492.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1V4_9STRA2.860e-3582.43Putative alternative oxidase n=1 Tax=Tribonema min... [more]
A0A7S2LGX7_9STRA1.830e-3483.10Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2UN98_9STRA4.290e-3481.43Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A0S3UCX6_9CYAN1.570e-3379.17Alternative oxidase n=5 Tax=Cyanobacteria TaxID=11... [more]
K0SXL9_THAOC2.430e-3381.69Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A098THC8_9CYAN4.330e-3378.08Plastoquinol terminal oxidase n=2 Tax=Neosynechoco... [more]
UPI001F554B9B3.640e-3276.71plastoquinol terminal oxidase n=5 Tax=Nostocaceae ... [more]
C5YA16_SORBI3.710e-3273.97Ubiquinol oxidase n=1 Tax=Sorghum bicolor TaxID=45... [more]
UPI001D13DFD35.020e-3276.71plastoquinol terminal oxidase n=2 Tax=Tychonema Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25520contigH-paniculata_contig25520:813..1333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1e-34
Seed eggNOG ortholog2880.D7FS91
KEGG rclassRC00061
KEGG koko:K17893
KEGG ReactionR09504
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006629,GO:0006720,GO:0006721,GO:0006996,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009579,GO:0009657,GO:0009916,GO:0009987,GO:0016043,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016491,GO:0016679,GO:0016682,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0046148,GO:0055114,GO:0071704,GO:0071840,GO:1901576
EggNOG free text desc.ubiquinol:oxygen oxidoreductase activity
EggNOG OGs2CMS2@1,2QRMM@2759
Ec32 ortholog descriptionAlternative oxidase
Ec32 orthologEc-05_004910.1
EC1.10.3.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929754.3982654-CDS-H-paniculata_contig25520:812..9171622929754.3982654-CDS-H-paniculata_contig25520:812..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25520 813..917 -
1691480996.8320947-CDS-H-paniculata_contig25520:812..9171691480996.8320947-CDS-H-paniculata_contig25520:812..917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25520 813..917 -
1622929754.4128706-CDS-H-paniculata_contig25520:1207..13331622929754.4128706-CDS-H-paniculata_contig25520:1207..1333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25520 1208..1333 -
1691480996.854948-CDS-H-paniculata_contig25520:1207..13331691480996.854948-CDS-H-paniculata_contig25520:1207..1333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25520 1208..1333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25520.6950.1prot_H-paniculata_contig25520.6950.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25520 813..1333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25520.6950.1

>prot_H-paniculata_contig25520.6950.1 ID=prot_H-paniculata_contig25520.6950.1|Name=mRNA_H-paniculata_contig25520.6950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MVQYYGDRTYARFYALETIARVPYFGYLCVLHLYETLGQWRKAEYLKVHF
AESYNELHHLLIMEELGGNLLFKDRYL
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mRNA from alignment at H-paniculata_contig25520:813..1333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25520.6950.1 ID=mRNA_H-paniculata_contig25520.6950.1|Name=mRNA_H-paniculata_contig25520.6950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=521bp|location=Sequence derived from alignment at H-paniculata_contig25520:813..1333- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAGTACTATGGCGACCGTACGTACGCTCGGTTTTACGCGCTGGA GACTATCGCCCGAGTACCGTACTTCGGGTACCTGTGCGTTTTGCACCTGT ACGAGACTCTGGGACAATGGCGGAAGGTGAGGAGAGAAACGGATTGCTTG ATGGGCGTATACATGATTTAGTTGAACAGCGTCTAATTTATCATATCCCC GAAATTAGGTCGGTGCTTCTCTTGCTCCCTCTGTTGAATGATATAAGGGT TCTCATTTCCGAGTTTTTAAGAGCAACAAAAAACAACAACTCACTTTTGA TTCACAATTCTGCATGCTTTTTGGGGTGGACCTGCCCAGATTTTGAAGCG AATCATGCCTCTCTTTATTTTTATTTTTATTTTTATTGTCTCTCTGTTCC TTTGTTTTCCCTTTAGGCGGAATACTTGAAGGTGCACTTCGCGGAGAGCT ACAACGAGCTACACCACCTGCTTATCATGGAGGAGTTGGGCGGAAACCTG CTCTTCAAAGACAGGTACCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig25520:813..1333-

>mRNA_H-paniculata_contig25520.6950.1 ID=mRNA_H-paniculata_contig25520.6950.1|Name=mRNA_H-paniculata_contig25520.6950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig25520:813..1333- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAGTACTATGGCGACCGTACGTACGCTCGGTTTTACGCGCTGGA
GACTATCGCCCGAGTACCGTACTTCGGGTACCTGTGCGTTTTGCACCTGT
ACGAGACTCTGGGACAATGGCGGAAGATGGTGCAGTACTATGGCGACCGT
ACGTACGCTCGGTTTTACGCGCTGGAGACTATCGCCCGAGTACCGTACTT
CGGGTACCTGTGCGTTTTGCACCTGTACGAGACTCTGGGACAATGGCGGA
AGGCGGAATACTTGAAGGTGCACTTCGCGGAGAGCTACAACGAGCTACAC
CACCTGCTTATCATGGAGGAGTTGGGCGGAAACCTGCTCTTCAAAGACAG
GTACCTTGCGGAATACTTGAAGGTGCACTTCGCGGAGAGCTACAACGAGC
TACACCACCTGCTTATCATGGAGGAGTTGGGCGGAAACCTGCTCTTCAAA
GACAGGTACCTT
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