mRNA_H-paniculata_contig25483.6941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25483.6941.1
Unique NamemRNA_H-paniculata_contig25483.6941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25483.6941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25483contigH-paniculata_contig25483:419..2821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929752.0133061-CDS-H-paniculata_contig25483:420..5821622929752.0133061-CDS-H-paniculata_contig25483:420..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25483 421..582 -
1691480995.9584448-CDS-H-paniculata_contig25483:420..5821691480995.9584448-CDS-H-paniculata_contig25483:420..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25483 421..582 -
1622929752.0276308-CDS-H-paniculata_contig25483:2548..28211622929752.0276308-CDS-H-paniculata_contig25483:2548..2821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25483 2549..2821 -
1691480995.975897-CDS-H-paniculata_contig25483:2548..28211691480995.975897-CDS-H-paniculata_contig25483:2548..2821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25483 2549..2821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25483.6941.1prot_H-paniculata_contig25483.6941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25483 421..2821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25483.6941.1

>prot_H-paniculata_contig25483.6941.1 ID=prot_H-paniculata_contig25483.6941.1|Name=mRNA_H-paniculata_contig25483.6941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
QNTFSLKAGIVDIPVGFVTAPLPSNPHHSTLKTPQWRDVEGHQRDRSAGY
LNPKGVDNDKIPCASESELAGEGGGRGGLGPPQMLIGVSVQAQKAAISRP
GSPLRRPLPINATSTLGSGPSGFGSMYGKGTEAGGRSGSGSLSAA
back to top

mRNA from alignment at H-paniculata_contig25483:419..2821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25483.6941.1 ID=mRNA_H-paniculata_contig25483.6941.1|Name=mRNA_H-paniculata_contig25483.6941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2403bp|location=Sequence derived from alignment at H-paniculata_contig25483:419..2821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAATACGTTTTCTCTGAAAGCGGGCATCGTGGACATTCCCGTAGGGTT
CGTAACCGCACCGCTACCATCCAATCCGCACCACAGCACACTCAAGACAC
CGCAGTGGCGAGATGTCGAGGGCCACCAACGGGACAGGTCCGCTGGCTAC
TTGAACCCCAAGGGTGTGGATAATGACAAGATCCCTTGCGCGTCGGAGAG
CGAGTTGGCTGGAGAGGGTGGGGGCAGGGGGGGGTTAGGCCCCCCTCAGA
TGTTAATTGGGGTCAGCGTGCAGGTGTGAAATATGTGATTTTTTTTTTTT
TTTTCGGGGTCCCCTTTGTGGAGGATCCCCTGCTGGAGGCTAAGGCAGAA
AAAATTATATATTTATATATATATATATAAATATCCTTATGTTATATTTA
CGCCGTCCAACGAGATGATATGGGTTTCTTTCGTATGCATGTTGGTCGGT
TTTATTATGATTTTTCCCTCCAAACAAGTGAGAATACTAGTAATAGGACT
ATTTCCGGGTATTAAAAAAGAAAAAAATTGCTTGAGTTTGAGCATGTGCG
GAATAGATGATGACACATGGAATAGATCTGCTCGCCGTTGTTTTTTTCGG
TTTTTTGCAGTATTCGGAGCAGTCGTAGATATAGATGGTCCGGGGCACAT
ATAATAGAAGTAGTTACTTACTATGGCAACTGGGGCGATTTTTTTTTTTT
TTAATAGTCGCAAATAGTCCGGGGAGCGGAATAATTGGGACATCTTATAT
TGTGTATTTGATTTATAGACGAATGTTTTTTCGAGTATCTATATTTGCCT
TATTTTGGGCCCCTGTTTTAGTGTTTATCTTTTTTAATATTTAGTGTTGG
CCACAGCCCTAAGTAGATAGATACATGGTTCGGGCTTTTTTTTACGGTCC
CTGGGAGACCAGGAAGGAACCCCTGCCATGCACTTGTACAAGGTTGCTTT
CGTGCGGCGCTTTGCCAGTTTCCCTGCGTGGGGATAGATACATGGTCCCT
CCGGGGCACATGGTATAAACATCCTTGCTCACGCCGGCACCAACCTTGAG
GATAGTTGCAATACTTGAATTTATATATATAAATATATATATATATATAT
ATTTAAAAAAAAAAAACGTCCAAAACCGTTGGATATATATATATATATAT
ATGCATATTTTAACGCATCCTCCCCGACCTCCGCAAACCTCAGGACTGAT
TGTGTTATGTGCTTTGGGAACTTGAGTTGACGAGGAAATCCTCTCGTAAC
GGCCAAATATTAAGAAATAGACAAGTAATGCCCATGCAGTCAATACTTCG
TGTAGCATGGAGTGGATTGAGCTTTACGCAGCAGTTGTATAACAGTGTGT
TTGAAACAGTCTTATGATGACGTCCGTTTATCTGTCGATGATCACTAGTG
TAGCACTTGTATACATGCTTGCCTAACATTGCAAGTAAGTGTTGCTGCGA
CTTGGGATACGAGGATGTATAGGAATTACATACTTCAAGGAGGGAGTAAT
GACAAAATAGCGGCGCAATTCGTGACGTTTCGTAGTCGGTTGTCTGTTTT
CCACAAATTGGGAAATCTACTAGTAGAAGAGGTTGATCCAACAGTTCATT
GAGAAGTTCCTGTAAATCGCGGAACGGCAGGAACGATGCGCTTGTACGCG
GGGGATGCGTGTACGTAGCGTAGGAGAGAGTGGACACACCATGGGGTGCG
CCCCACCATCTCTCACTCCTTGTAACATACCTCTTGGTCTCTTTTGGTTC
TCTAGCCCACAAGTGGCACTGTTCAACCATCATCAACTGTTTGTATCCTC
GGCGTAGCGTGTCTGCTCGGTCAGCCTAACAGCTACCAGCGCCAGCCTTT
GCAGCTACCTGCGGGTCTATCATCAGATATTCTCAACACCAAAGTCATGT
ACTAATAAATAGGTTGGTAACAACCAGACCGCGTTCTGAATACTGATGAG
TTACCCTTTGCGAGCAAAAACTTGAACTTTGAGGAACCGGAACTTGAATG
ATCAGTCGTGAATAATGACATATGATGATATGCGAGTAGTATTATCTCGG
GAGTTTTTTTTTTTTTTTTTTTTTTTTTTTACAGGATTTTTTGTCATGTT
TTCTGCAATGGTTGATTGATCTGTTTCTTTGTTTTCTGGTTGATAAGTGT
ATATGCACAATTTAAGCATCTCCCCCCCCCCCCCTCGGCCTATCCGCCCC
TCCACCCCCGGAATTAAAACGCGGTGGGTCTCGTCTCAGGCGCAAAAAGC
GGCGATTTCTAGACCTGGGTCACCTCTCCGGCGTCCCCTCCCTATAAACG
CCACCTCTACGCTAGGAAGCGGGCCGTCTGGATTTGGAAGCATGTACGGC
AAGGGGACAGAGGCAGGAGGGAGGTCTGGATCTGGATCCTTAAGTGCGGC
GGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25483:419..2821-

>mRNA_H-paniculata_contig25483.6941.1 ID=mRNA_H-paniculata_contig25483.6941.1|Name=mRNA_H-paniculata_contig25483.6941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig25483:419..2821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAATACGTTTTCTCTGAAAGCGGGCATCGTGGACATTCCCGTAGGGTT
CGTAACCGCACCGCTACCATCCAATCCGCACCACAGCACACTCAAGACAC
CGCAGTGGCGAGATGTCGAGGGCCACCAACGGGACAGGTCCGCTGGCTAC
TTGAACCCCAAGGGTGTGGATAATGACAAGATCCCTTGCGCGTCGGAGAG
CGAGTTGGCTGGAGAGGGTGGGGGCAGGGGGGGGTTAGGCCCCCCTCAGA
TGTTAATTGGGGTCAGCGTGCAGCAGAATACGTTTTCTCTGAAAGCGGGC
ATCGTGGACATTCCCGTAGGGTTCGTAACCGCACCGCTACCATCCAATCC
GCACCACAGCACACTCAAGACACCGCAGTGGCGAGATGTCGAGGGCCACC
AACGGGACAGGTCCGCTGGCTACTTGAACCCCAAGGGTGTGGATAATGAC
AAGATCCCTTGCGCGTCGGAGAGCGAGTTGGCTGGAGAGGGTGGGGGCAG
GGGGGGGTTAGGCCCCCCTCAGATGTTAATTGGGGTCAGCGTGCAGGCGC
AAAAAGCGGCGATTTCTAGACCTGGGTCACCTCTCCGGCGTCCCCTCCCT
ATAAACGCCACCTCTACGCTAGGAAGCGGGCCGTCTGGATTTGGAAGCAT
GTACGGCAAGGGGACAGAGGCAGGAGGGAGGTCTGGATCTGGATCCTTAA
GTGCGGCGGCGCAAAAAGCGGCGATTTCTAGACCTGGGTCACCTCTCCGG
CGTCCCCTCCCTATAAACGCCACCTCTACGCTAGGAAGCGGGCCGTCTGG
ATTTGGAAGCATGTACGGCAAGGGGACAGAGGCAGGAGGGAGGTCTGGAT
CTGGATCCTTAAGTGCGGCG
back to top