mRNA_H-paniculata_contig25478.6939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25478.6939.1
Unique NamemRNA_H-paniculata_contig25478.6939.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25478.6939.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 8.330e-33
Identity = 69/127 (54.33%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:   16 QVERAILALPGISYCSVSVSTGRARVSFAPVNSGGGVXXXXXXXXXXXXXXXGNEKSHASRMSGARDVVKAVKALGFGASVVDVGGDAISGVKRLQEMTRHDVRMWRRYFFIAALCTVPLLLAHWMQ 396
            +VERA+LALPG++ CSVSV+TGRA ++F    SGG                   E+      SG RDV++AV+ LGFGA  VD+GGDA+SGVKRLQEMTR DV MWRR F ++   TVPLLLAHW+Q
Sbjct:  482 KVERAVLALPGVASCSVSVTTGRASITFKGDGSGG--------------KPSSMEEGTGKEASGVRDVIRAVEGLGFGAKAVDLGGDALSGVKRLQEMTRKDVAMWRRLFLLSVFFTVPLLLAHWLQ 594
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25478.6939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL7_ECTSI8.330e-3354.33Heavy metal translocating P-type ATPase n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25478contigH-paniculata_contig25478:21..3431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog2880.D8LTL7
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.7667696-CDS-H-paniculata_contig25478:20..1101622929751.7667696-CDS-H-paniculata_contig25478:20..110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25478 21..110 -
1691480995.8490446-CDS-H-paniculata_contig25478:20..1101691480995.8490446-CDS-H-paniculata_contig25478:20..110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25478 21..110 -
1622929751.7918377-CDS-H-paniculata_contig25478:3125..34311622929751.7918377-CDS-H-paniculata_contig25478:3125..3431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25478 3126..3431 -
1691480995.8622954-CDS-H-paniculata_contig25478:3125..34311691480995.8622954-CDS-H-paniculata_contig25478:3125..3431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25478 3126..3431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25478.6939.1prot_H-paniculata_contig25478.6939.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25478 21..3431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25478.6939.1

>prot_H-paniculata_contig25478.6939.1 ID=prot_H-paniculata_contig25478.6939.1|Name=mRNA_H-paniculata_contig25478.6939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MYPYPQVERAILALPGISYCSVSVSTGRARVSFAPVNSGGGVGMGALSSS
SDSGDGGGNEKSHASRMSGARDVVKAVKALGFGASVVDVGGDAISGVKRL
QEMTRHDVRMWRRYFFIAALCTVPLLLAHWMQ
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mRNA from alignment at H-paniculata_contig25478:21..3431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25478.6939.1 ID=mRNA_H-paniculata_contig25478.6939.1|Name=mRNA_H-paniculata_contig25478.6939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3411bp|location=Sequence derived from alignment at H-paniculata_contig25478:21..3431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCCCTACCCTCAGGTCGAGCGCGCAATACTAGCGCTACCGGGGAT
TTCATATTGCTCTGTTAGTGTTTCGACTGGCCGGGCGCGTGTCTCCTTCG
CCCCCGTAAACTCGGGCGGCGGTGTGGGCATGGGTGCGTTATCGTCATCC
TCGGATAGCGGCGACGGCGGCGGCAACGAGAAGTCTCATGCTTCAAGAAT
GAGCGGAGCGAGAGATGTGGTGAAGGCGGTAAAGGCGCTGGGTTTCGGAG
CATCAGTCGTGGATGTTGGCGGGGACGCAATCTCTGGGGTTAAGCGCTTG
CAGGAGGTGCGTGAGAGTTCATGAGAGGGGGTACTCATGGGCTGACTGAC
TGACTGACCACCACTAGACATGCCTGCAGATAATATAATCCTTTCACTCG
ACCTCACCAACTTTGAAATGCATGTATGCCAACGTGACAAAATATTTTTT
CGAACCCTCACCGACCGACTGCGTAGCCTGTTTGTCAGTTTGTCAGATTC
CTTTTTTCGTATACCAGTAATAGCAGCGCCAGGGCTAGGCCTGTGCCGTT
CGTTCTTGTCCTCGCCCCCGCGTATTCGTTACCTTGGCTCCGAAGATTCG
TTTTTCAAGAATCACTTGGAAACGTTGTTCGAAAGCTGTTCCGAAACGAC
GGCGACATTTTTGTACTCAGTAATGAATTATGTACAGGATCGTTTAGCCT
ACTCTACTGTGCATCATATCTCGTCTGGAGATATACTCTGATAAGCAGAA
TTAGAACAGCTAAGGAGTGACATTTGTCATGATCCACAGTATGTTACAGT
AGTGAACCCGATTTGGACCTCTAGTGCCCCGCTTAAACACCCGACCTACA
ATCGGGTCTATCACTAGTACACTAAAATCAAGTAACTAGTGATTTTTGTG
CCCTGCATGCAAACCCCGTCATAAAATCGAACCGGTCTACAATCGGTTCC
TCTACCCGACAATGTCTATGGTTGAGAAAAAAAAATCTCAAGTATGATGT
GGTTTTGTGCTGTCGATTTTTTTTTTTTCAAAGGGTTAGATGCAAACGCC
CCTTTCGGTGGTGACATTAAATGGAAAATGGCCAAGGCAGGGAACAGTGG
TATAAAAGGCCCTAGAAACCACAAACCACGCCGGTCATTTTTGGGATGCT
CGCTACAGGAGCTACATGTACTCTATATACGAATCAATCGTTTTTTTTTG
TGTGCATAAATGATTACCGTCCAGTCGATGTCTGGCGAATCAGACTTGCC
AGTTAAGTTAACCTTCAAGTGTTTAGTGTCCGGCGCGGTATTAATAAAAC
AGTACAAGATTAAATAATATGTAGGTATATATACTCCCTCTGTCCCAAAA
GTCTGTGATGTTAAGGGTGTAACTTGTTGCAATGGCCTCCGAATCAAAAA
CGTTTTTTTGCGTCGGATTCCTTGATGCCTTCTCGTTTATGTTATTCTTC
GCGGCTTTCCTCGTTCCCAACAATCCACCATTCTACTGCCGCGTCGAAAG
CCTCTCGGTCGATTTTGACCGATTTTGGCAGACTTCCCGCAAGTTGACTT
TGTCTGGTTTCGGTGTGCTGTACCTCGAAATCGTTACCTCCTAGCACCTT
CAAGGCCTGCTTGTACCGCTTAAAGAGGCTCTGCTACATTCTCTCTAAAA
TTGCCGCGTCGTACACATTGTACATGCTCTTTCCCCACTTCACAAGGCCG
TCTATCATATTGTAACGCTCCCTCCAAACCCTACTTTTCAGAGATACAAA
GAACCCCAAATCGTATTTGTTGAGATTTGGTGACTGCGTGGGCTGAGTTA
CGAGAGTGACGTTCCACTCCCCGTCCCTCCCGAGTTCGTTGAGCTTCCGC
GGTATGTCTTTCCCCATGTGGAGGGTCGCTCCGTCCTGCTTCGCGACCAC
TTGCTCACCCTCCAACTACGGCATATTTTCCTTCAATGCTGGGAGAAAAG
AGTCCTTGTACCACTCCTGGTACCACTCGGCGTCAATGGTCACGTCGAAC
CCATATAGCTGCCCCCGTTCACGTTGGGCCGAATTCCTTTGCGCCTGCTT
GATGACGCCAACACGCCAGATTCCAATCTTGCCATCGAAATCGCAGGAAG
GAACTGGACGCAAAACTGTGCAGATGAATATCACCTTAGGACTGTGACTC
TTGTGCTGTAGTTTGGTGGAACCCACCCTTTCCTCTCCGGGGATCATGCG
GACGCGATCCCTGTCGCGAATTAGGTAAAACCACGCTTGATCGATGTGAA
TTGTTGAAGCTGCTCGTAAAAGTGATGCGGCTCCTTGCTGCTTGGTCCAG
GATGAAGTCTATCGGGTCCTTTCGGTGCGTTAGCGACAGAGATGGGGTAA
TGCTCCGTTTCACCTTCATGGCGTCCATCTCTTTGAACCATCGCTAAAGC
TTTGAGCTGCTGGATACGAGACGAACTTCGGCTAGCTTGGCAGACAGTTG
ATCGAGGGCCAGGGTTCGATTCGCGGCGTTGAGCCTTCGAACCGTGGCGT
GCTTTGTTAGTGTACATTCCGGCGACCGCTAGCTTCGTGACGCTGACCTC
AGCGAAAGGGTGTTCCCATGATCCAGTTGTTGTCGTACAGGCGCCCAAAG
TTATCTGGGGTACTGGTCGCCATCTCCAAACTACTCTGCCAATTCTGGCC
CAAAGCCTTAAGGAAGCCGTTTCTTACCGGGAGGTAGCACTAAAGCGTAC
CGTACGGCCAATGCGTTTCAACCTTCCTCGCTCAGCTCGCACTTTTTACC
CCGGGCTGATGGGCTCTCGGCAAAAGATGCCGGGTTCGCCGGAGTGGTAA
TGTTGGTTGCGCAACTCGCGCCGCAGACGGTCTGGAGGCTGTACGAGAGT
CGTACAGCTCTTGGCGAGGTGCTGAGATGCTGTGTGACGATAGGGGGGGG
TGCTTTGTCCGCCGCCGGGAGCAGCGCAGCCGCTCAAAATGGAGCCGAAA
AGGGCCGTTTTTTAAGTTTCCCTTCTCGCGAAGTCTTCTCGTTAATTTTT
CGGAACTAGTTGGGAACAATGTGCGAAAACGAAATAACCATCCTTGAAGT
TTACGTCCATAGATTGAATTCAAACCATACATGACCGAAACATTCTTCTT
ATTCGTAGAGAAACGGCCTACACAAGAAACGAGAAATCATAGCGTCGCAG
ACTTACGGGACGGAGGGAATACTAGTATCGTACATATAAAACAATCAACT
ATGGATGAAGACCACAGTTTTCCCTCTTCAAGTGTCGTGCTCACATACGG
AGGGTTGTGATAATGTATTCATTGTCTTCATATTTTTCCGTTACACCCTG
TGCTTGTACTGCTGTTGGCAGATGACCCGGCACGACGTTAGGATGTGGAG
AAGGTATTTCTTCATCGCCGCCTTGTGTACCGTTCCACTTCTGCTGGCTC
ACTGGATGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25478:21..3431-

>mRNA_H-paniculata_contig25478.6939.1 ID=mRNA_H-paniculata_contig25478.6939.1|Name=mRNA_H-paniculata_contig25478.6939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig25478:21..3431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCCCTACCCTCAGGTCGAGCGCGCAATACTAGCGCTACCGGGGAT
TTCATATTGCTCTGTTAGTGTTTCGACTGGCCGGGCGCGTGTCTCCTTCG
CCCCCGTAAACTCGGGCGGCGGTGTGGGCATGGGTGCGTTATCGTCATCC
TCGGATAGCGGCGACGGCGGCGGCAACGAGAAGTCTCATGCTTCAAGAAT
GAGCGGAGCGAGAGATGTGGTGAAGGCGGTAAAGGCGCTGGGTTTCGGAG
CATCAGTCGTGGATGTTGGCGGGGACGCAATCTCTGGGGTTAAGCGCTTG
CAGGAGATGTATCCCTACCCTCAGGTCGAGCGCGCAATACTAGCGCTACC
GGGGATTTCATATTGCTCTGTTAGTGTTTCGACTGGCCGGGCGCGTGTCT
CCTTCGCCCCCGTAAACTCGGGCGGCGGTGTGGGCATGGGTGCGTTATCG
TCATCCTCGGATAGCGGCGACGGCGGCGGCAACGAGAAGTCTCATGCTTC
AAGAATGAGCGGAGCGAGAGATGTGGTGAAGGCGGTAAAGGCGCTGGGTT
TCGGAGCATCAGTCGTGGATGTTGGCGGGGACGCAATCTCTGGGGTTAAG
CGCTTGCAGGAGATGACCCGGCACGACGTTAGGATGTGGAGAAGGTATTT
CTTCATCGCCGCCTTGTGTACCGTTCCACTTCTGCTGGCTCACTGGATGC
AGATGACCCGGCACGACGTTAGGATGTGGAGAAGGTATTTCTTCATCGCC
GCCTTGTGTACCGTTCCACTTCTGCTGGCTCACTGGATGCAG
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