mRNA_H-paniculata_contig25375.6911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25375.6911.1
Unique NamemRNA_H-paniculata_contig25375.6911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: D7FPD4_ECTSI (Protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD4_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.490e-17
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENL 153
            +++DEIFDMVKP DPT+IT ADLL SG G T+VSML+DT+GFW Y+NRE+L
Sbjct:  693 DVKDEIFDMVKPADPTFITLADLLASGAGHTVVSMLVDTNGFWAYDNRESL 743
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: A0A6H5KJ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ60_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.340e-17
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENL 153
            +++DEIFDMVKP DPT+IT ADLL SG G T+V+ML+DT+GFW Y+NRE+L
Sbjct:  679 DVKDEIFDMVKPADPTFITLADLLASGAGHTVVTMLVDTNGFWTYDNRESL 729
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: A0A1B6EJK3_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EJK3_9HEMI)

HSP 1 Score: 73.2 bits (178), Expect = 2.160e-15
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRE 147
            +++DE+FDM+KP DPT IT  DLL SG G T+VS+LID +GFW YENRE
Sbjct:   58 DVKDEMFDMIKPVDPTKITLQDLLNSGQGETLVSILIDLNGFWTYENRE 106
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: A0A8K0JXD3_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JXD3_LADFU)

HSP 1 Score: 77.4 bits (189), Expect = 2.510e-15
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENL 153
            NI+DEIFDMVKP+DPT IT  DLLR G G T+VS+LID +GFW +ENRE L
Sbjct:  383 NIKDEIFDMVKPEDPTKITLQDLLRCGQGDTMVSLLIDLNGFWNHENREAL 433
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: A0A1B6HTW8_9HEMI (Uncharacterized protein n=3 Tax=Homalodisca TaxID=139475 RepID=A0A1B6HTW8_9HEMI)

HSP 1 Score: 73.2 bits (178), Expect = 2.570e-15
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRE 147
            +++DE+FDM+KP DPT IT  DLL SG G T+VS+LID +GFW YENRE
Sbjct:   65 DVKDEMFDMIKPVDPTKITLQDLLNSGQGETLVSILIDLNGFWTYENRE 113
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: UPI000C71612B (serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI000C71612B)

HSP 1 Score: 70.9 bits (172), Expect = 5.590e-15
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRE 147
            +++DEIFDMVKP DP  IT  DLL  G G T+VS+LI+ HGFW YENRE
Sbjct:   13 DVKDEIFDMVKPADPCKITLQDLLSCGQGDTMVSILIEFHGFWAYENRE 61
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: UPI001F03E532 (serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03E532)

HSP 1 Score: 76.3 bits (186), Expect = 6.520e-15
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENL 153
            +IQDEIFDMVKPKDP  IT  DL+ SG G T+VS+LID +GFW YENRE L
Sbjct:  382 DIQDEIFDMVKPKDPYKITLQDLVNSGQGETVVSILIDLNGFWTYENREVL 432
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: A0A1B0DIH0_PHLPP (EF-hand domain-containing protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0DIH0_PHLPP)

HSP 1 Score: 73.6 bits (179), Expect = 8.640e-15
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENL 153
            +++DEIFDMVKP+DP  IT+AD+ R G GPT++S+LI+ H FW YENRE +
Sbjct:  137 DLKDEIFDMVKPEDPCRITFADIARCGQGPTMMSILIEFHKFWNYENREGV 187
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: UPI001ED8966C (serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8966C)

HSP 1 Score: 75.9 bits (185), Expect = 8.800e-15
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENL 153
            NI+DEIFDMVKP DPT IT  DLL  G G TIVS+LID +GFW +ENRE L
Sbjct:  380 NIKDEIFDMVKPADPTKITLQDLLNCGQGDTIVSLLIDLNGFWSHENREAL 430
[Close]
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Match: H9J4G7_BOMMO (Uncharacterized protein n=3 Tax=Bombyx TaxID=7090 RepID=H9J4G7_BOMMO)

HSP 1 Score: 75.9 bits (185), Expect = 9.080e-15
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 NIQDEIFDMVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENL 153
            +++DEIFDM++PKDPT IT  DL+RSG G T VS+L++ HGFW YENRE L
Sbjct:  416 DVKDEIFDMIRPKDPTKITLQDLVRSGHGHTAVSILLELHGFWAYENREAL 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25375.6911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPD4_ECTSI2.490e-1770.59Protein phosphatase 2A regulatory subunit n=1 Tax=... [more]
A0A6H5KJ60_9PHAE6.340e-1768.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1B6EJK3_9HEMI2.160e-1565.31Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
A0A8K0JXD3_LADFU2.510e-1570.59Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A1B6HTW8_9HEMI2.570e-1565.31Uncharacterized protein n=3 Tax=Homalodisca TaxID=... [more]
UPI000C71612B5.590e-1565.31serine/threonine-protein phosphatase 2A regulatory... [more]
UPI001F03E5326.520e-1570.59serine/threonine-protein phosphatase 2A regulatory... [more]
A0A1B0DIH0_PHLPP8.640e-1560.78EF-hand domain-containing protein n=1 Tax=Phleboto... [more]
UPI001ED8966C8.800e-1570.59serine/threonine-protein phosphatase 2A regulatory... [more]
H9J4G7_BOMMO9.080e-1564.71Uncharacterized protein n=3 Tax=Bombyx TaxID=7090 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25375contigH-paniculata_contig25375:473..631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog2880.D7FPD4
Preferred namePPP2R3C
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0000913,GO:0001776,GO:0001782,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002759,GO:0002831,GO:0002920,GO:0003254,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008104,GO:0008150,GO:0009524,GO:0009653,GO:0009790,GO:0009792,GO:0009826,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0012505,GO:0015630,GO:0016043,GO:0016049,GO:0019220,GO:0019222,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022607,GO:0030865,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032101,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032506,GO:0032989,GO:0033036,GO:0033365,GO:0033674,GO:0034613,GO:0040007,GO:0042325,GO:0042327,GO:0042391,GO:0042592,GO:0043029,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043900,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045577,GO:0045579,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045859,GO:0045860,GO:0045937,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048583,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050776,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051721,GO:0051881,GO:0051900,GO:0060255,GO:0060560,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902105,GO:1902107,GO:1902410,GO:1902850,GO:1903047,GO:1903706,GO:1903708,GO:2000026
EggNOG free text desc.positive regulation of B cell differentiation
EggNOG OGsKOG2562@1,KOG2562@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons1
Model size159
Cds size135
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.3166296-UTR-H-paniculata_contig25375:472..4961622929748.3166296-UTR-H-paniculata_contig25375:472..496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25375 473..496 +
1691480994.2878218-UTR-H-paniculata_contig25375:472..4961691480994.2878218-UTR-H-paniculata_contig25375:472..496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25375 473..496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929748.3334713-CDS-H-paniculata_contig25375:496..6311622929748.3334713-CDS-H-paniculata_contig25375:496..631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25375 497..631 +
1691480994.2991374-CDS-H-paniculata_contig25375:496..6311691480994.2991374-CDS-H-paniculata_contig25375:496..631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25375 497..631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25375.6911.1prot_H-paniculata_contig25375.6911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25375 497..631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25375.6911.1

>prot_H-paniculata_contig25375.6911.1 ID=prot_H-paniculata_contig25375.6911.1|Name=mRNA_H-paniculata_contig25375.6911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MVKPKDPTYITWADLLRSGTGPTIVSMLIDTHGFWQYENRENLK*
back to top

mRNA from alignment at H-paniculata_contig25375:473..631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25375.6911.1 ID=mRNA_H-paniculata_contig25375.6911.1|Name=mRNA_H-paniculata_contig25375.6911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig25375:473..631+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATACAGGACGAGATTTTCGACATGGTGAAGCCCAAAGACCCAACATA
TATCACCTGGGCGGATCTTCTTAGGAGCGGAACGGGACCCACGATCGTCA
GCATGCTCATCGACACCCACGGATTCTGGCAATACGAGAACCGCGAAAAC
TTGAAGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25375:473..631+

>mRNA_H-paniculata_contig25375.6911.1 ID=mRNA_H-paniculata_contig25375.6911.1|Name=mRNA_H-paniculata_contig25375.6911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig25375:473..631+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGCCCAAAGACCCAACATATATCACCTGGGCGGATCTTCTTAG
GAGCGGAACGGGACCCACGATCGTCAGCATGCTCATCGACACCCACGGAT
TCTGGCAATACGAGAACCGCGAAAACTTGAAGTGAATGGTGAAGCCCAAA
GACCCAACATATATCACCTGGGCGGATCTTCTTAGGAGCGGAACGGGACC
CACGATCGTCAGCATGCTCATCGACACCCACGGATTCTGGCAATACGAGA
ACCGCGAAAACTTGAAGTGA
back to top