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Homology
BLAST of mRNA_H-paniculata_contig2537.6908.1 vs. uniprot
Match: D8LEV2_ECTSI (Transcription factor E2F n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV2_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 4.690e-13 Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 2
Query: 125 TPIM-KLSPPKPEPDFSYSMFDHVPGLTELFVGAPTAPNMTEESIQ-DDLQQSE-LLDAFYDTPRRG 316
TP+M KLSP KPEPDFSY+MFDH GLTELFVGA ++Q DDLQQ++ +LDAF+DTPRRG
Sbjct: 321 TPLMTKLSPCKPEPDFSYNMFDH--GLTELFVGASGGVQAPGGNMQGDDLQQADGMLDAFFDTPRRG 385
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 77.8 |
| Seed ortholog evalue | 2.4e-12 |
| Seed eggNOG ortholog | 2880.D8LEV2 |
| KEGG ko | ko:K04682,ko:K06620 |
| KEGG Pathway | ko01522,ko04110,ko04218,ko04350,ko04934,ko05161,ko05166,ko05167,ko05200,ko05206,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map04110,map04218,map04350,map04934,map05161,map05166,map05167,map05200,map05206,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226 |
| KEGG Module | M00692 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | protein dimerization activity |
| EggNOG OGs | KOG2577@1,KOG2577@2759 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03000 |
| Exons | 4 |
| Model size | 655 |
| Cds size | 228 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2537.6908.1 >prot_H-paniculata_contig2537.6908.1 ID=prot_H-paniculata_contig2537.6908.1|Name=mRNA_H-paniculata_contig2537.6908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MGLGLGFTPIMKLSPPKPEPDFSYSMFDHVPGLTELFVGAPTAPNMTEES IQDDLQQSELLDAFYDTPRRGGNNT* back to topmRNA from alignment at H-paniculata_contig2537:6029..13449- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2537.6908.1 ID=mRNA_H-paniculata_contig2537.6908.1|Name=mRNA_H-paniculata_contig2537.6908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7421bp|location=Sequence derived from alignment at H-paniculata_contig2537:6029..13449- (Halopteris paniculata Hal_grac_a_UBK monoicous) TAGCTATCTGACGATTTCACAAGCGGACTTTACGTCCCCTCCAGGGAATA
TCCGGGGTTTTTATCCCACGAGCGCGCAGCAGGTACGTGAAAAAAAATAT
AGCAGGTGTAGTTTATCGAGGTGTCGTTGTTGGTTTAGTTTGGGAAGGAG
GAGGGCAAGTCATGTTGGGAAGAACGGTGTATATAGTTATTCGTGTGTTT
TTTTGGCGCGGGCGGGGGGGGGATTGGCAAAAGGATACGCTTCGCATCCG
AGCTGTGCCTTGTAGAAGGTGGACATTTAGGCTCTCTGGGAAGGTTTAGT
GGACATGACTAATTAGTATAGTTGGTCTACACACACATATATATATATAT
ATATATATATTTCGGTTGTGTGTTGATACAATCACAATCCCTACCGAAGT
ACGTACATATCCAAAATCCGAATTTGGTGAAATTCCGAAGTTGCCGACTG
GAAGACCCCAAAGTGAACTACATGAATGCCCCCACAATATATCTGTAGCC
CTTCACCGCGTACGTCATTCCGCGTCAGAATCCGGGTACGAAAGATCCCT
TGATTACAACCAAAAGAAACTTGAGGACAAGTTGGTGTTGGGGCACATTC
TGAAGCTTGAGGCGAATATTTGTCGAATTTCTTGGTGACTGCTCCAAGTT
TTCGTGTTGTCCGGGGAGTCAAACACTTGCATGATGCTACCCGGAAACGA
GCCACTGACCCCCTTTTGCCCACGCATCGAGTATAGCGTTAGTGTCTTTA
TCTAGCAAGTCGGACAGAACGGAGCAGAAAAAATATACCGGAGTTAATGT
GCCACCAAATAGAGCTTTTCTGTTTTGTTCTGCTCTATCCATTTTTACTC
GGCATGAGCGGGCAGCATTTCTGGCTCTCTTTGGTCTGCGACGAACTCTA
CGGCGACGTGCATACCGCCGAAATTTGATATTGCAGCAGATGTGATCTGT
CCGACGTGTGCGACATGTTCATGTCCAGATTCGTCGTGTGGGCAACAAAT
TGAAACCAATCTTGTTGAAACTCCATTGCTGACCCCCGTAGTACCGCAGC
CATCGTAGAGTCAGTCACGAGTCGACATTTTGCACAATATTCACTCTCCG
ACGAAACAGAGGTCTGCTCTAGCTTTACACAGACATCAGTACACATAGTT
GGTGAAAGCATCACAAGTTGAATACGAATATGCGTAACCGATCAACCCAA
AAACTGCACACAAGCCTACGGCGCGTATGTAGGGTAGGGTAGCGAGCCAC
GAGTTATATGTTGAGCCCGGATCAAAACCCCAGCTCGATCACGGCGCTAC
ATCCACCAGACGGGAAGTACAATAGTGGTAGTTAGTCGGAGACGAGAAAC
AAGGGAAAGGGTCAAGCATGGAGGCGGGAGTGAGTACAAGCATGCTCACG
TGCCCAGCACGGAGACTCTTGAAGGAGGAACAATCACACCAATCAATGCC
GCTGGCAGTACAGCACAATAGTGCAATCATGTATAGAAATTTAGCTCTCG
TTATTTATTTATTTTTTTGTAAAAAATATGAACACCGTCAAATGTTGAAG
ACTAATGGACCGGCGCGCTTCTATCGACGCTGAACGCTGTGGCGACTGGC
CATATGCCGAACCATGCACAGCATTGTTTTTTTTTATTTGTGTGTCATGG
TGAGGGCGCTTGAAGCCCGGTGTGTATGGGTTGTATTGTCTGTACAGACT
TTTGTTTTGTGGATGTGGGGTCGAGTGCGGCGTTGCTATTTGTCTCTGTA
GTGACCGACCATCTTCCAAAGTTTTCCAAGCGTAAGCATTTATGCCCGTC
TCCAAGTAAGTGTCTCTGTAATCTATATTAAATATATAGACTTGTGTTGG
TGTTATCTACGAAGAAATGACACTGGGTAAATGTGCCCTTTTATTGTATT
TTCGCCATGGACGACGGCCCTTTTTTGGTTTCAATGCTGTTACGGATGGC
TTGCGGCAGGTACCTTGCCCACCTTGTATCAATCCAGAATTTGGGGCCAG
CATTCCAGTGTTTTACTCTCTATCCCTCTCTTTTTGGTTCTATACAGACA
GTGTAGAAGGCAGAGCCCCCCTCTTTCTCTCGGGATTTTTTTCTGCTGAA
TCGAGAGCAAAAATCTGCGCACAAACATTGAAGCGTAACGCCGACATCAT
ATAAAAAGGAGCATCGGAAAGAGAGGAGCCTGATAAACCGAAGTGTACAT
GCCTCCTGTTTTTCCTAATTCCCAACGCCTGTGAAGTCGCGAGATGCCGA
TGATACACTAAACATTTCGGATCAAGGCCGTTGAACGTCGACTCGAATTC
TGGAACCATGGCAGCACGATGCTACTAGGTGCTTTCGCGAACCTGTTGGA
ATCGATAACTGGGAGTCACGCATGCGTTGCTGAAATGTTCGATTATAGAG
TATGAACGTCCGTCGGCATGATTTTCTGCTTTTGAGCATTAAGATTGGCC
TAAGGTTGAAGGTTGCATGAAAGGTCTTCAGGCGATCCGGAGGGGCTATT
ATCTACTGCGGAGGAAGAGAATGCAAACATTTGACCAAATGTACGATCAA
TCGCCATTTTTGTAACAACGCCACTTGATTTATTCAGTGCACAAGACAAG
CCACCGTCGTTTGTCGTGTTTTTCTAGGGAGGGTAGTTGTCGCTCGTGGT
TTGTGTTGAGCTGTTCAGCGCTGGCGTACGCGGGTTACAGCTCGCTTTTT
TTTTTTTTTGAGAAGTCTGCCTGCCTGATGCGAGTGTTTTCTTGTCTTTC
CTCTCTTTGCCCTCCTTGTACCGTTAGTAACTCAGACTGCTGTCCCTATC
TTGTTTTGTATTACATAAATACCCTTCTTGTGATGTGTACCTTTTCTGGT
CTCCTGTCCCTCATTGGCTTGCATAATTTTTGCTCGTAGTGCCCTTTGAT
TGTATATTTATTGATCACTTGCCGTTCTTACCTTGTATCTCTTATTGCGA
TGTCTGCTTCCTATGTTACACCCGTACCTTTTTTTGTCGTATTACGCTTC
TCATCTGGTACCTAATATCTTGGCATGTATCTTTCCGCATCCTCCACCGA
GAAGTCTCCTGGGGCAGGGCTTGGGATGGGGCTCGGATTAGGCTTCACGC
CAATCATGAAGCTCTCTCCACCTAAGGTGCGCATGACCTTACTTGGCGGG
TGAGGGTTTAGGCCTTTACCTGCCTTTGTCTACGATCGGGGTTTAGGCCT
TTTGATGCCTACTTGTGACAGCTGTATACCGCGGATTTAGGAGCGGTGAA
AATCCGGCTATACCATAAGCTCTTGGTGGATTTTTCGGATTTCATCGTGG
GCTGTTTCAGATCTTTGAATGATCTTTCGGATGCTTCATAGTTAGCTGTT
GGAGATTTTGATTGGGCCACTTCATGACTCGCGTGTACAGCTAAAAATCT
ACGTTTTGCATAGATATTTTTCATTGCCTTCGAAAATGAGCTCTAACCGA
AACACACCTGTACGCAAAATCCCTTCCTGGGACTGTGCACTTCCCAGTAC
CGTCCTGAATCTTGTTGGTCCGAATGCTGCATTCCTACCATCCTGGACCG
AGAGGCAGTGGGGGAGCGGGACCCTCGACCGTTGTCCCCATCTGGGCACT
CGGAGGGGGATATCGTTCTTTTGCGAATCTCTTTTTCGGGACAAGTGGTT
TTTTATTATTATTATTATTATTATTTTATTTTTTCCGTATGTCTATTACC
AGTTCGATGCTTGCGGTTTTTAATTGATATTGTGTTGATGATCGTCGCCT
CAGTGCCGCTATTGTGCTGTTTGTGGCTTGATGAGACATGTTCTACGCGA
GCAACTTGGGGAGTTGCGAGAGTGAGCAATGAGTGCAGTGCACGCGAGGA
AGTCAGTGGAGTGGATGAGGATGGTGCATTTCATCGCCCCTCCCTGTCGT
ATTGGTTTGTGCGCATGTGTTTGCATTTGCCTATGGTAAAGCTTGGGGCT
TCCTGGTGAGGAGTGGGATAAGGGAGGCCCTTTTTTTTGCGACTTTATTG
GTCGCTAATAATGGTGGGACAGTTTTTTTTTTTTAATGTTTTTGTAAAAT
GGTTCACATTTTTGTATTTCACCTACGCAAGCACGACGAACGCCAGACAC
CAGAACTAACCACAACTTTATATACCCCCAAACCCCTACTACGCCCAAGG
CATAGTGTGCGTTGGTAGAGCTCAAATCGGCGCCCATTTGAGCAAAAAAC
ACGCATCCTGTGCACACGCCAGGACGGATCAGGACGGACGGTGACGTCAT
GATTGAGTGTACATTGAGTTTGTACAATACCGTCAATCATCATTTTTGAC
CAGTTGGTAAACACTACTGGGCTAAAGATGAGGTTTTCGTGCGCTTACCT
TTCACCTTTCCTACGTGTATGCATGGACTTACTAAAGGACTACTAGTATC
TTCACTGAAGTACTCCCTTTCCTGTACCAGGCCTCGGAGTAAAATACCGT
TTGTTCAAAACGCGAAAATCGAAATCGCACAGAGAAAAAACGGTTGTTGT
AGTTGGTTTTTGTGTGCGTGAGGGTGTGAAGAACGTGTGGGGTCCATTTC
ACACTAGCCAGCACACACACACGTGCAGACCCATCATCGCAATTGACTTT
GCTTTGTTTCGTGGTTGTTTTTGTTTTTGTTTTCATGTCTCCCATCGTCT
ATAGCATACGACCTTGAATCCAGGGGAGGATTTTTACGCCGCAGCGTATT
TTTGCTTGTGAGGTTCAATTTCGTCGTGTATCGCTCATAGTGAGCGGCAG
ATTTCAGACCTGAATCCACCTGCACCAATGTCTCCCTTAAAACGGAAATC
CGTTTCACAGCCGCTGATAATAATTTTGGAAACTTGTGGCACTGCTCGAT
TTTTTTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAACCAATCGATCCCC
GACTTCCTAGAATGTAATATGTTGTGACACGGGACTGTGTGACTTTGCGT
TTCACGAGATGGGGGCGGGGAGGGGTACCGTTTTATAATACCAATACGTT
TTTTGCGGATGTGTCATCATTCATAACCGGGCTGTATTATGTATGTATAC
CTCGAGGTGGATAGAATCATGTGATGGTGTAGGGTCAAAAAGGGGTCAAA
ACCCATCATTTTTGTGCCCAACCATTGCGCGCTCACGGCTGGTGTGCTCC
AGCCGCAACGCCATGAGCTTTGATGTGGAGGTAGTAACAGCTGATAAGAC
CGCAGAACACACGTTTGTTTCATCGAGTGGTGACAACAGCCAGCTGTACA
GCGCTGAAAGCATGATACAGTCAGCAGAGTTGCGCGCGGCCACGGAAGAA
ACGGACAGTCAGTAGGGTGCATAAGTGCATAGAGAGTACAGTGGGTGTAC
CATAAATTACTTCTGCACAGGAATATATCCCTTTGCGCGGTGATACTGCG
GTGACGAAGGCATGAGCATCTCCCGAGAGTACTTGTAGCGAGTGACGGCT
GCGGTGTATATGCTGTTCTCTTATCCGCGATGCTACCCACTACAGACAAA
GCAGTAGCCAGCCAGCCTGCCACAGCCGTAGTCTGACATGACAACACGGA
ATGATGGGTAGTCAAGAATTGGTAATTCGGCGTTGGGTCTCCTGGAATAA
AAAGTTCCCTCTGTCGTTTTTTTCCCTCCAGGAGTCAGAGGGTTGATGTC
GAAATCGGTCCTCTTTTTTTTTCTTTTGTCTCCGACATGCTCTTTATCAA
TTTTGCAGCCTGAGCCCGACTTTTCGTACAGCATGTTCGACCACGTCCCC
GGCTTGACGGAGTTATTCGTGGGTGCGCCCACGGCTCCGAATATGACGGA
GGAGAGCATACAAGATGACTTGCAGCAGGTAATCTTGGGGGCCCGAGTAT
GTGTGTATTGTAGTAGTTAGTACGGTGTACAAACCAAGGTCTAAACGATG
GGCCGTTGGGCGACGACTCGTTGTTGTATTATAGGTGTCATGGACTGTGT
ACGAACACACGAGACGTTGAAAGGATACATGCGGTGAACGTGTACAAACA
GCAGATGAGACGCTAAAACGTATCTGTTTTTACAAGATGCCATATACTGG
TACACTCGCGTAGTCAGGGGTATGTATGTATGAGTCACACTTTTGGGGGG
AAATATCCGGGGAGAAAGTGAAAACTGCTGCTAGAGGATCCTCATGGCGA
TCATCATCACGTATTAACAAAATTGGAGGATTACTGTTGGAGAATGACCA
TGGGTAGGGTACGCTCGTGAGGTGGGTTCCATCCCTCGACACACAGACTC
GCTATGCTAAGCCAAGGAGGCTCGTGTAGCCAACAACGCTGCTCGCTACG
CTTGCATCAAGATTCGTTTTTCAGGAACTATGTTGAGTATAGATTTGGAA
AGCTGTTGCGAAACGTGTACCAACCACCTCACCGTGTTGAATCATAAGGA
TGGTATTTTGTTATGAAGGTGATAAAACCTCCTCCCAAGTGATCATCCAC
GACACAAGGAAAAAATGAAGACATCCACAGGTTTTCTGAAGTTATGAAAC
TTACTTCGTGTTGGTGGCTGAACATCTAGAGCGACTGACGTGCCCAATCT
ATAATAATGGCAATTAAAAGGTCTTGGGGCAATTTTTGTCGAGCGAACTC
CACTTGTTGCATCGGTTGCAGTTTTGTCCTGTGTGAAGTCATATAATAGC
AAGGTACCAGGTGACCCCATGAAAATAACGGGTGTAAAAGAGTCGCCTAA
CAGCACAAGATACGCCGCGAAAACATGCAAATATAGAGCTTACATTATTG
GACGTGAGTATTATTCAGGTGATGAACACGCTGTAGACAGGCAGTGACCG
AGCGTATCTCGGATCCAAAAGGTGGTAGGTGTTTTTTTCTTTTCTTGGCG
ATTGTGGCTTTACTATATTGGATTTAGTGTGGAGATAAAACGGGCAAACA
TGAGACTTGTTTTCGAAGCGACCAACTGATTAACTCGTCCTGCACAGGTG
ATTAGAGAGTCACGGACTCATGACGGGTTAACATGACCCGTGCTCGCTTC
CCATTGCGTAATTTTTACTCTTGACGCAATATCGGGGCAGTCGGAGTTGC
TCGACGCGTTTTATGATACGCCGCGACGAGGAGGGAACAACACCTGATGG
CAGGGTTGGAGAATGACGATACAGGCCCCGGAAATGCGCGAGAGAGTTAG
AGAGGTAGATAGTGGAGTTTTCTGCTAGTATTTTCTGCTACATAGGAAGG
ACAAATGGTGTACGGACTTTGTTTTTGTTTTTCTCTTCTTTTTTCCCCCC
TGTTTCGGTAGCAGTAGATGAATTAATATCTAGTTCTATTTTTGTCTTGG
TTCTGGTCGTCGTGATCGTGGACGGTGAAATATTAAATATTGTTTTGTTT
CTCCAGCTCCATTTTTTTTCAAGACACCAGAAATCCCGACTGCAGCATAC
GGTAAATAGTATGACAAAAAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig2537:6029..13449- >mRNA_H-paniculata_contig2537.6908.1 ID=mRNA_H-paniculata_contig2537.6908.1|Name=mRNA_H-paniculata_contig2537.6908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig2537:6029..13449- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGGCTCGGATTAGGCTTCACGCCAATCATGAAGCTCTCTCCACCTAA GATGGGGCTCGGATTAGGCTTCACGCCAATCATGAAGCTCTCTCCACCTA AGCCTGAGCCCGACTTTTCGTACAGCATGTTCGACCACGTCCCCGGCTTG ACGGAGTTATTCGTGGGTGCGCCCACGGCTCCGAATATGACGGAGGAGAG CATACAAGATGACTTGCAGCAGCCTGAGCCCGACTTTTCGTACAGCATGT TCGACCACGTCCCCGGCTTGACGGAGTTATTCGTGGGTGCGCCCACGGCT CCGAATATGACGGAGGAGAGCATACAAGATGACTTGCAGCAGTCGGAGTT GCTCGACGCGTTTTATGATACGCCGCGACGAGGAGGGAACAACACCTGAT CGGAGTTGCTCGACGCGTTTTATGATACGCCGCGACGAGGAGGGAACAAC ACCTGA back to top
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