mRNA_H-paniculata_contig25363.6904.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A6A3XRN8_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XRN8_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.710e-13 Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
TT++EDN+ AI L + +G H RTKH+ +R H IRE + G + ++YV T +QLAD+LTKA
Sbjct: 43 TTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADMLTKA 102
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT) HSP 1 Score: 71.6 bits (174), Expect = 4.480e-13 Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 1 GSTTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
G+TT++ DNKSAI L K H R+KHI VR+H IR+ + EG + +K++ TGDQLADI TK+
Sbjct: 1216 GATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKS 1277
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A4Y9XYA6_9APHY (Uncharacterized protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XYA6_9APHY) HSP 1 Score: 67.4 bits (163), Expect = 6.700e-13 Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
T + DN+SA+ L K + H RTKHI VR+H IRE I +G + ++YV TGDQ+AD+LTKA
Sbjct: 43 TLILVDNQSAMALAKNATFHDRTKHIAVRYHFIREKIDDGEVRVEYVPTGDQVADVLTKA 102
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: H3H5K8_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K8_PHYRM) HSP 1 Score: 70.5 bits (171), Expect = 7.540e-13 Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
TT++EDN+ AI L + +G H RTKH+ +R H IRE + G + ++YV T +QLADILTKA
Sbjct: 233 TTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVTVEYVDTKNQLADILTKA 292
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A6A3JPU3_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JPU3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 8.300e-13 Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
TT++EDN+ AI L + +G H RTKH+ +R H IRE ++ G + ++YV T +QLADILTKA
Sbjct: 697 TTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVKRGTVKVEYVDTKNQLADILTKA 756
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A151R7G2_CAJCA (Copia protein n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R7G2_CAJCA) HSP 1 Score: 65.9 bits (159), Expect = 1.120e-12 Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
T L+ DNKSAI++ K H RTKHI V++H IRE + G + L Y ++G+QLADILTKA
Sbjct: 4 TVLWCDNKSAISIAKNPIQHGRTKHINVKFHAIREAEKNGDVQLTYCRSGEQLADILTKA 63
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A6A3GRJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GRJ1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.440e-12 Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
TT++EDN+ AI L +G H RTKH+ +R H IRE + G + ++YV T +QLADILTKA
Sbjct: 149 TTIWEDNQGAIALVHNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADILTKA 208
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A6A4D097_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4D097_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.960e-12 Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
TT++EDN+ AI L + +G H RTKH+ +R H IRE + G + ++YV T +QLAD+LTKA
Sbjct: 731 TTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTTNQLADMLTKA 790
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: A0A6A3HFF3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HFF3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.870e-12 Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
TT++EDN+ AI L +G H RTKH+ +R H IRE + G + ++YV T +QLADILTKA
Sbjct: 220 TTIWEDNQGAIALVHNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADILTKA 279
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9) HSP 1 Score: 68.6 bits (166), Expect = 5.450e-12 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 7 TTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQTGDQLADILTKA 186
T L DNKSAI L K H RTKHI R+H IRE +++G +A+ Y+ TG+QLADI+TKA
Sbjct: 1352 TPLLIDNKSAIQLCKNPVFHDRTKHIETRFHFIRECVQDGRIAVDYIHTGEQLADIMTKA 1411 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25363.6904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25363.6904.1 >prot_H-paniculata_contig25363.6904.1 ID=prot_H-paniculata_contig25363.6904.1|Name=mRNA_H-paniculata_contig25363.6904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp GSTTLYEDNKSAINLGKGSGAHCRTKHIGVRWHGIREWIREGLLALKYVQback to top mRNA from alignment at H-paniculata_contig25363:47..235+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25363.6904.1 ID=mRNA_H-paniculata_contig25363.6904.1|Name=mRNA_H-paniculata_contig25363.6904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig25363:47..235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25363:47..235+ >mRNA_H-paniculata_contig25363.6904.1 ID=mRNA_H-paniculata_contig25363.6904.1|Name=mRNA_H-paniculata_contig25363.6904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig25363:47..235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |