mRNA_H-paniculata_contig2536.6903.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2536.6903.1
Unique NamemRNA_H-paniculata_contig2536.6903.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A6H5K4P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P6_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.570e-63
Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 3 
Query:  303 MATPTTSGRVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATEDDES 647
            MATPTT+GRVIIGQGI VKGDIKNCEEVIVRGFFDAGNVEAKSVVVEA+GVLTGAT+AQNAKIAGKFDG+LRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATE+++S
Sbjct:   82 MATPTTAGRVIIGQGITVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEADGVLTGATKAQNAKIAGKFDGHLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATEEEDS 196
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A192ILY4_9HYPH (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192ILY4_9HYPH)

HSP 1 Score: 90.9 bits (224), Expect = 2.300e-17
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 3 
Query:  327 RVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQ-FATED 638
            R+++G+GI +KG+I NC E+++ G  DA  VEA    V  NG  +G    + A IAG+FDG L     L V S+G+ KGT+RY  +++E GG++ G+IQ F  E+
Sbjct:   78 RLLVGEGIKLKGEITNCAELVIEGAVDA-RVEASRFQVSNNGTFSGECNVEEADIAGQFDGTLNCRGKLIVRSTGKLKGTLRYGDVEIEGGGRVAGEIQEFGAEE 181
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A369TG62_9PROT (Uncharacterized protein n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369TG62_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 2.160e-15
Identity = 39/110 (35.45%), Postives = 73/110 (66.36%), Query Frame = 3 
Query:  312 PTTSGRVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATEDD 641
            P  S ++ +G+ I V G+I++C+ ++V G  +A   +++ + V A+G   G+     A+IAG+FDG+L + E L + S+G+  GTIRYRG+++E+GG++ G +   +E++
Sbjct:   89 PAESKQLTVGRDIEVSGEIRSCDRLVVEGKVEADLSDSRVLEVAASGAFKGSAIIDIAEIAGRFDGDLIVRERLYLRSTGQVNGTIRYRGLEIESGGRIGGTLVELSEEE 198
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A2D7PCB5_9PROT (Uncharacterized protein n=1 Tax=Candidatus Pelagibacter sp. TaxID=2024849 RepID=A0A2D7PCB5_9PROT)

HSP 1 Score: 83.6 bits (205), Expect = 4.150e-15
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 3 
Query:  270 SPPFISFLSGIMATPTTSGRVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATEDDES 647
            S PF    +      T  G ++IG G+ V GDI    EV V G    G V +  + V+  G + G +  + A+I G +DGNL +   L+VTSSG AKG IRY+ +++  GGK+ G I   ++D+ S
Sbjct:   16 STPFGRSTTSRSTLDTKEGSIVIGAGVSVTGDIDAPNEVSVNGKH-TGKVVSSKITVKNGGKVDGESSVETAEIEGSYDGNLAVAGTLSVTSSGVAKGEIRYKDLEIALGGKISGTIAEMSDDEAS 140
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A2S6SPY9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha5_Bin5 TaxID=2013080 RepID=A0A2S6SPY9_9PROT)

HSP 1 Score: 81.3 bits (199), Expect = 2.120e-14
Identity = 36/109 (33.03%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  318 TSGRVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATEDDE 644
            TS  ++IG+G+ + G IK   EV ++G  D G+V+  +V+V   G + G  +A+  K+ GKF+G + + + L++ + G   G + Y  IQ+++GGKL G+I +  ++++
Sbjct:   42 TSSSLLIGEGVNITGTIKAENEVTIQGSVD-GDVDCHTVIVSKTGSMKGKLKAEIMKVEGKFEGEMNINDQLHIRTKGSVNGKVFYGSIQIDDGGKLLGEINYRGKNNK 149
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: D7G2V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2V7_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 5.520e-14
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 3 
Query:  294 SGIMATPTTSGRVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATE 635
            +G M        +++G+GI++KGD+ NC  +IV G+F+ GN     + V   G   G    + A I G+  G L  +  L V +SG+ +G +RY  +++E GG + GDIQ  T+
Sbjct:  102 AGAMGEVVGDDSMVVGKGIMIKGDVDNCATLIVEGYFE-GNFRGGFLAVPKGGKYVGMADVRRADIGGRLHGTLSASTLLEVRASGKIEGMVRYNDVKLEQGGSMVGDIQQGTK 214
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: UPI00190C2156 (polymer-forming cytoskeletal protein n=1 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI00190C2156)

HSP 1 Score: 79.7 bits (195), Expect = 1.320e-13
Identity = 40/111 (36.04%), Postives = 70/111 (63.06%), Query Frame = 3 
Query:  309 TPTTSG--RVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQFATE 635
            TP  SG  ++I+GQ I +KG+I +C+ ++V G  +A  +E++ + +  +G   G+ + + A+I G FDG+L   + L + S+G+  GTIR+  I +E GG+L GD+Q   +
Sbjct:   61 TPEVSGGSKLIVGQKIKLKGEIADCDTLVVEGQVEA-TMESRVIQIAESGTFKGSVQVEVAEINGTFDGDLTARQKLVIHSTGKVTGTIRFGKIVIEEGGQLSGDVQVGLD 170
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A1G7S5U0_9HYPH (Protein CcmA, bactofilin family n=1 Tax=Limimonas halophila TaxID=1082479 RepID=A0A1G7S5U0_9HYPH)

HSP 1 Score: 81.3 bits (199), Expect = 1.660e-13
Identity = 39/122 (31.97%), Postives = 73/122 (59.84%), Query Frame = 3 
Query:  327 RVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGD-IQFATEDDES*VVTEMRPSPLVGS 689
            ++I+GQ I + G+I  C++++V G  +A   E + + V   G   G+     A+IAG+F+G+L + E LN+ ++G+  GTIRYR +++E+GG++ G  ++ + E+ E     +    P  G+
Sbjct:   99 KLIVGQNIRMSGEIAACDKLLVEGMVEADLTETRELEVAPTGSFKGSAVIDVAEIAGRFEGDLVVRERLNLRANGQVHGTIRYRALEIESGGRIGGTLVELSAEEAERYRTDDTAAQPANGA 220
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A192IE29_9HYPH (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IE29_9HYPH)

HSP 1 Score: 78.2 bits (191), Expect = 3.120e-13
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 3 
Query:  330 VIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDIQF 626
            ++IG+ I VKG+I +CE +++ G  +A     +S  +   GVL G    Q A+I G+F+G LR+   L V + G A+G I Y  +++E GG++ G+I+ 
Sbjct:   58 LVIGKEIHVKGEIGDCERLLINGTAEATLTNCRSFEISETGVLKGEAEVQRAEIMGRFEGTLRVRGRLTVRAGGRAQGNIAYAELEIEPGGRIDGEIEI 156
[Close]
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Match: A0A1Z8NV96_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TMED23 TaxID=1986864 RepID=A0A1Z8NV96_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.720e-12
Identity = 32/98 (32.65%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  327 RVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANGVLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGGKLFGDI 620
            ++++G+ I++ G+IK+CE++IV G  +A   +A+S+++ +NG   G      A I+G F+G L   + L +  SG+  G++ Y  I++E+GG++ G++
Sbjct:   52 KLVVGKNIILNGEIKSCEKLIVDGTVEAKLNKAQSIIISSNGYFKGNAEVNEADISGTFEGTLAAKDLLVIRKSGKIVGSLSYARIKIEDGGQVVGNM 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2536.6903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4P6_9PHAE1.570e-6393.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A192ILY4_9HYPH2.300e-1742.86Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A369TG62_9PROT2.160e-1535.45Uncharacterized protein n=1 Tax=Ferruginivarius se... [more]
A0A2D7PCB5_9PROT4.150e-1537.30Uncharacterized protein n=1 Tax=Candidatus Pelagib... [more]
A0A2S6SPY9_9PROT2.120e-1433.03Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
D7G2V7_ECTSI5.520e-1434.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00190C21561.320e-1336.04polymer-forming cytoskeletal protein n=1 Tax=Novih... [more]
A0A1G7S5U0_9HYPH1.660e-1331.97Protein CcmA, bactofilin family n=1 Tax=Limimonas ... [more]
A0A192IE29_9HYPH3.120e-1336.36Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A1Z8NV96_9PROT1.720e-1232.65Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2536contigH-paniculata_contig2536:11802..20050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.9
Seed ortholog evalue4.4e-13
Seed eggNOG ortholog1238182.C882_3269
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs1N26P@1224,2JTDQ@204441,2UD9Q@28211,COG1664@1,COG1664@2
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-28_002000.1
COG Functional cat.M
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
Exons4
Model size1692
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2536.6903.1prot_H-paniculata_contig2536.6903.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2536 12104..19008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.5571623-UTR-H-paniculata_contig2536:11801..121031622929747.5571623-UTR-H-paniculata_contig2536:11801..12103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2536 11802..12103 +
1691480993.9647338-UTR-H-paniculata_contig2536:11801..121031691480993.9647338-UTR-H-paniculata_contig2536:11801..12103Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2536 11802..12103 +
1622929747.62104-UTR-H-paniculata_contig2536:19008..200501622929747.62104-UTR-H-paniculata_contig2536:19008..20050Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2536 19009..20050 +
1691480994.0199454-UTR-H-paniculata_contig2536:19008..200501691480994.0199454-UTR-H-paniculata_contig2536:19008..20050Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2536 19009..20050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.5705392-CDS-H-paniculata_contig2536:12103..121451622929747.5705392-CDS-H-paniculata_contig2536:12103..12145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 12104..12145 +
1691480993.9777982-CDS-H-paniculata_contig2536:12103..121451691480993.9777982-CDS-H-paniculata_contig2536:12103..12145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 12104..12145 +
1622929747.5827699-CDS-H-paniculata_contig2536:12560..126661622929747.5827699-CDS-H-paniculata_contig2536:12560..12666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 12561..12666 +
1691480993.987708-CDS-H-paniculata_contig2536:12560..126661691480993.987708-CDS-H-paniculata_contig2536:12560..12666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 12561..12666 +
1622929747.59513-CDS-H-paniculata_contig2536:16368..164811622929747.59513-CDS-H-paniculata_contig2536:16368..16481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 16369..16481 +
1691480993.998926-CDS-H-paniculata_contig2536:16368..164811691480993.998926-CDS-H-paniculata_contig2536:16368..16481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 16369..16481 +
1622929747.6080644-CDS-H-paniculata_contig2536:18921..190081622929747.6080644-CDS-H-paniculata_contig2536:18921..19008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 18922..19008 +
1691480994.0098329-CDS-H-paniculata_contig2536:18921..190081691480994.0098329-CDS-H-paniculata_contig2536:18921..19008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2536 18922..19008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2536.6903.1

>prot_H-paniculata_contig2536.6903.1 ID=prot_H-paniculata_contig2536.6903.1|Name=mRNA_H-paniculata_contig2536.6903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MATPTTSGRVIIGQGIVVKGDIKNCEEVIVRGFFDAGNVEAKSVVVEANG
VLTGATRAQNAKIAGKFDGNLRLTEGLNVTSSGEAKGTIRYRGIQVENGG
KLFGDIQFATEDDES*
back to top

mRNA from alignment at H-paniculata_contig2536:11802..20050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2536.6903.1 ID=mRNA_H-paniculata_contig2536.6903.1|Name=mRNA_H-paniculata_contig2536.6903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8249bp|location=Sequence derived from alignment at H-paniculata_contig2536:11802..20050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGAAATTCCACAAACCGCCCTTTAGTCTATGAAATCGCGAAAAAACA
CTGCCCCCACGACCCCAACCCACAGAGCAATACCAGGCCTTCACGATCCT
GCACCGGCTACCGCGCTCCCTGTCCTGTTTTCAACAACGTCGTGACCCTG
CCTCATCTACGGATCCCCTCTCACGAGTTGTAGACCTCGCCTGGTTGTCG
GTGTTTTTGTTTCGGCCATAACCTCTTTGGGCGTCTTCTCTTTTGGTGGT
TTGTCTTGGTCACATAATCAGCCCACCCTTCATCTCTTTTCTCTCAGGCA
TCATGGCGACTCCGACAACGTCTGGACGGGTGATCATTGGCCAGGTATAG
TGCCGTGCTGGACTTCATAGAATTTTCAAATTATGCTGTTGGATATAGTG
TTACTCTGAGGGCGGGCTTGGTTAGAACGCACCCTGTAAATTCCATGCCC
ATCTTGTCTTTCCTGTTTGCAAACAGTCAAATAGTCAACAGACGGTTAAG
GGAATGAAATTGAGTGGCTAATTATATTGACTTCAGAGATGTATGGTGTT
ACAGGAAACGAATTATGGTGTACCTCTGGTGAAGGGCAGATATGCCGGGC
TGACAGGAATTTGAGCGTATGATGTAAGAAAAAATTGAGTATGTAGAGGA
GTTTAAACGCGCAGCTGGGCGCTGGCAGCTACATCGTCTTAGTTCACACC
CACCTCCCGGCCATGTCTTGTCTGTCCCTGTGTGTGTCTTGTGTGTTCTA
TGAGTTCAGGGGATCGTTGTGAAGGGAGACATCAAAAACTGCGAGGAGGT
TATCGTCCGCGGATTTTTCGATGCTGGTAATGTGGAGGCTAAATCAGTTG
TCGTAGAGGCAAACGGTGAGGATACCCTTGATCCTTTGAGGCGTCAACAG
CAAGAACGCGTGTGGTTTTGGTAGAGGAGACAACAACCCTGTGTAGTCTG
TCGTCGTCTTATTTATGATTGTATTCGAAGGAGGGCATAGTCAGGTGAGG
TAGGCATGTGTATATACGTACATATACGCACATCGGCTCTGACAGCTTCA
TTTACACTTATTTCCATATTGAATGCACCTACCCATCATGAAAGAACACA
CACACAGATACATGTTTTTCTTGGTGAAAGCCTTCGTTTTTTTGGAATGT
TCTGATGAAGAAAATGCCTTTTTTGGCGTTCACCGTCTTCCGCACCCGTT
ACAGTTTGTTCCAATGTTCCAACTTTTTTAGTTTGATCCAGGGGGTCGTA
GGTCGTGTCTTGCTGTCGTTCAACCCGCACCCGTACGAAATTTCCGATGC
GTTGTATGTATGTCACACGTACCCGCCGTCTGAAAGAGAGGGTCAAGACA
CGGGAAACAGTATCAACGTCAGTCCTGATCGTGTGGTCCCAAGATATTTG
GTCCCAACCTGCACTGCACCTGTCAGTGGTTGTTTGCCCGCGGTCCCCAT
CTTTTTGCGGCACGACTTGAAACTTAAAGTACTCTTCACACCCGGAGGTA
TTGGACTAGCGGGGTACAAACGCTTTTCAATCGTGATTGATTCTATCTCG
ATCACTACTCCGGGGCTACTGATGACCGAACACTGTGCCCTTACAAAAAA
ATCCTCTTGTGGGGGTTAGCCGCGTTTGAAACGTGCTCAACCTTTATATT
CACGTTATAGAGGATGCTTTCCTCTTGAATTGCGTTCTTCGACCAGACCC
AAACAGGCCAAACCGTTCCACACGGACCCTCACCCTAATTCATTGGGAGC
AACCGGGAGACCGGTGAAGACCCCTATGTTTTCAATTTTTTGTCCAGGTG
TCGTGTTTTTGCCCACGCAGGATTGACCCACATTACAAAGTACCATTTTT
GCCCTTTGGCGAAGAACAAAGTAATTCATCGCTGATGAATAGGTAGCGCA
CCAATGGTCTATCGATATTTAATTCGATCCCAGTACCGGTGGCGGCGCCT
TCGTAGTGAGGAGGACAGCTCGATACCGTTGTGTGTAATTATACACATCC
CCACGTGTCGAGCGAAGGTGTTTCCTTCATGCGCAATCGACTGTCTCCTT
CCCCACTGGACAGATGCGGGATGGCAATTCGGCCGACTGCTTCTGGCTCG
AGCTCTTGTGTACGAAACATGCTGACTGTGACTGTGTCTCTCGAGGATGA
CACCGCAGTCGTAGCCCGTTTGGTTGCATGTCGCTACCCTACTAGTTGCG
GGAACCATTTTTTATTACTCCTACGGTGGCAGCTGTATTAGAAACACCGC
CCTGGCCCTGACCAAAGCTCGGATTAGGCGCCACACGACTCACCCTAGTT
GGAAGATTTCGGGACGGGGGACTGGAAGATTTCGCGTATCACAAAATGTC
ATACTACACGAGGCCCCGAGTTTAAGGGTTGACACATGCACATCGTCGGC
TGGCTGCGCTCGCATGTATTATTGATGTCCCGCGACCTGAGTGACAACGA
CAGGAGGGGCTAGTGACGGGTCGTGTTACAGTACTCAGAATTTAAGGCCG
TTAAAACTGCAGCATGCGGAATGTACAGTTCAATATATGTTATACATTCT
CTATGCTCTCCTGTTGCGACGACGTTATGCTTTTCATCTCGTTCCTTGCG
CTTGTTGGCCACTGTGTGCAATTGAGTGGTTGTTTCCTGCATACTTCACG
GGGTAGGTGAGCAATAAGTCACACCCGACATGATGGATGATGACATGCTG
AAAATAGCGGGATGGCGCACTTGTTGACTAAAGTTTTTTCAAGTGCAACG
CCATCAACAATTAGGACCGGATTCAGCAGCTCTGCACACAAATAACAGCG
GAGATTTTGTTCTCGGAGCTTTCACCGATTTCCGTGCCTCGTAAGTAGGT
AACCTTTGTTGTTCCGAGATTTTTAGTCCCATGGCATCGGATCCTAGAAG
AGAATCAAAAGAAATGTGACAGTCCCGCGGCCAAGCCGCCGCGAAAGGGA
GGGGTTGGGGGGGGGCTCCAATTTTAAAATCAGGAGTACGACTGTAATAT
GTATCTCGGGCCCCAACTCCTTAGCCTTCGCGGAGGCGTGGCGTGTATAT
CCAAATTACGTCCAGGTCGCCATTTCTGGGCAGGGACTCCATGAGGTCAG
TTGCTGCAGGTGTCGAGTTTTTGTCTTCGCTCTCAGCCCAGCATCGTGCT
TGCAGTTGTACTAAAGCGAACAATGAACAACTATTGTGGTTTGATTGGTC
TGTAGGTGCGTGTGTTTGTTTGTGTGTGTGTTTGTTTGTGTGTGTGTAAA
GGGTTATACGGTTTTCCGGTTTTCATATCTGCACATCACTGTAGCGTTTC
TATATTCGTTTGGACCTGGCTACACAACCTTATATTCTTTATCCACGATA
CGGAAACTTTAGATGTTGTACACTCGACTGTTAAGGTGTAAATAGACTGT
TTCCTCGGTAGATATCCTACACGACCGGCCATAATTACCATCGTGTCTGC
AGTAAATGTTGACGCTGAATTTTTTCTATGGGGCAACGCGAATCTAGAAC
TGTAGAAGGTGTCCACACCCCGGACAAATGTAAGTGGTGTACTTAAGTTC
TTGTGTACTTGACTTGCGAAACACTCGTTCGGACAAAGTAAGAAAAAGTC
CTTACGAAAATTTCTGACGGAGCACTTGTTCAAGACAAATTACTTACGCA
AGTTCCTCGCCGAGTACTTTATCCTACTTCGATATCAGGTATGTACATGC
ACATATATGTCGCTTGAATTGACTTCGTCCGAAGGGAGTCGATGGCAGTA
AGAGATTTTAGACTTGAAAACAGTGGTGTTCACGAAAAGGGCACTAACAA
GAATAAATCGTTTCTAGAAGCACCACCATGAGACAACGTTCCGTGGGAAC
AACATCGAGGCGTTAGTTTTTTCGACGTCCAGGTGTACACCCTGCTATCG
CCATGGTAGTTTGAATATAACATGATTGGCTCCTCAACTTCGCAAAAACT
AACACCGATATATCGTTCTCACGAAGTAAATTTTTTATCGCGGTAGCTCT
AGAACCATTTTTTTTCCTCAAGTGGTTCTCTTTTCGTAACCGGTTTCACA
GGTTCCGGAAAATGTATGGTGTAATATACTGAACACACGCCTAGTCAACA
TCAACTATGAACAGAGCAAGAGACACGGCTGAAAGGTTGTGATTGAGGCA
AAATCCATCAGCATTTCCACAAACAAGACGGCCAGACTCTGCGTGGATCC
TGCAAACAATGCACGGAGCGCAAGTGTCACCCCCTGGATATTTCTTTGCA
TGTTGAACAGAACAGTTACTTTTGTTTGCTGTGATCTATGGTGCATGTTA
TCCTCTGCAGACTACTGCGGATATTTGCGGCCAGTAATGAGAATTCGACC
GAAATGTTAAACCGCAAAATATTGGTTGCAGAAAGCGGCTGTAAGAAACT
ATGTCCGTTTAACACATCATGCGCCCGAGGAAAGGTGCGCGACCTCGCCT
GCATTTTTTTTTTTTTCTGAAGACTTGATACACCGTGTATGGCGGACTAA
TCAAAACTGTACTCTTGATGGAACGTATGCCGGTTGTGTTTGATGTCCTC
ACTGTGTCTCTATGAAGGGGTACTCACCGGGGCCACCCGGGCACAGAACG
CTAAGATCGCGGGAAAGTTCGATGGTAACCTTCGGCTCACGGAGGGACTT
AACGTCACCAGCAGCGGCGAGGCAAAGGGGGTGAGACGCTAGGCTCTAAT
TAGGAGTCTATTCACGAAACGTGGGATCTGCTGAAAAAGTTGTGCGCAAA
GTTGCACTTCGCATGTGAATGAAACGAAGAACATTAAAGTTTGGGCCGTT
CCAGCGAGCATGTGTACCTTGTAATGCGAGGAGAGGTCTTGGATGACGTT
TGTACCGACGACTGCTGTTCGTCATTATCCTCCTCGTAAATGTCGGTATA
ACATTACATTTGCACCCATTCAAGTTGTGCAGTGCAGCAGTTGACTGGTT
ATTTGTGTGTGTACAAGGGTGGCTACTTTTCCAATTAGTCGATTTGTATA
ACTCCTTTTTTTGTTCGTTGGGCATTAAGTCATCGAGGTGCACGTTCTCC
ATTGTTCCGTGTGTGTTCATTCGTCGGAACCAGAAAATTGACCCAATTTT
TTTTTTTTTTAATTCTTGAAAGAGAGGAGCAAACGTTTGCCCCAACACTT
CCCCCCGAAAATGGGTTTGTATGTCGGTTACCCGAAGGCCTGACTTGATC
GCCGCGTGGTGGTCATGTGAGGTAGTCGCCCCGAGCGTTCGTACGACGTT
GCTTAGGGTAGTGTGGGACTCTCATCCACTAAAACCCCCTATGTTGATTT
CCTCAACTTGGTGCAGTACACGCACCCCCCTGCTCAACCAGGTTCGGCCC
TAGAATTCACCCGATTTTTATTCGGGTTTATTGTTGGAATTCTGGAATCG
GGTGACTGCCTGCAACTACGTGGTTATTCGGCATAATCTGCGGTATCTTC
CAATGGCCATCAGACCCAGGATAGTACCTTAAAGATGCGCCGGGTTCCAG
AAAATGCTCACGGAATGGAATTCCGGATTTTGCAAAAATTGACCAGAACG
ATCGTACCATAGCACCGAAAATGGTGGACGGAGTTTCAAAATGTTCGGAG
CAAAAATCCAGAATAAGTACTGGTTTTCCTGGACGCAAGAGTTCATCTCA
ATGGTGAAAAACACGTACGACTATTACATCATGAATGAACCTGTACTGTA
ACACAGATAAGGTACTGTCTAATTTTGAGGTATACAACAAGGGTACCTGG
TGACACTAATGGGAGCGCGAACGACAGCCCCATTGGTGTTATCTCAAGCA
CTGTCTGCGTGTTGTCATCATATATTCTAACTACCAAGAAGCAGCGATAA
ATATGCAACCGTGACCCTCTGACCCTATTGTTGATGTGGGAAATCATGCA
TGAAGTAATTAGTTCTGCAGTACTATGCAACACGCTTCTGGCTGCTGAGC
ATCGCACGCAAAACTAGCCGTGCTTCACCGTGAACTCCAAACAGGCTTTG
ACCACAATCTGTAAAGTTGTGTACGATACCCCGCGCACCCTCCATCCTCC
CAGCTCGGACGCTTACACATAATGCACTGTCGAAAAAGCCGCATATTCGG
CAACAGGCGAGTTCTAGCGTGAGGAGCAGACCGTGAAGAGCTCAGATCAC
AGATTCCCCACCGCGCGATAACAGTCTGGATTTATAAACGGATTTATCGG
GGGGGGGGGGGGGGGGGGGTTATAGTGGCCGGATCTGATTTTCTGACCGG
ACGAATTCAGATACAGACTCTCCGCTTGCGGCGGAGGCCATCTCTGATAC
CACTGTCCGAGACAGGGAGATAGGGAAACTTTGCGTCTCGTCATTGTATC
GGTGGTTCTCGTGGAAGTAGAAACGACCCGTGAAAGCTTTTTGTTAACGC
TCCCCTCAAAGGGATTTTGACTGCGGCAGGATCAATCGTAAGACAATTGT
TCCACAATGGATGTGGACCATAAGATATGGACCGATCGGCGCTTCAAGTT
ATAGAGGTTATTATGAAGGCGTTTCATATAACAGGGGGATTTCGCACATC
TTCCTCACAAGCTCGTGTATTGAATCGGTTCGCTGATACTCATGTGGTGG
TGTTTTTTTTTTTCCCGCGCGGTTGGTTGGCGAATGGTTTTGTCATGTCT
ACGGTGGGCAGCTTGCAATGTGCATAAGTTATCCGAGGGAGTCACGTACC
ACGGCTATCCCATAATATGCCCTAGGTTTATAAGTGATGAACCGAAGGGA
TGCCCAATACGACAGTATTCCCCGCCTTCTGCGGGGTTCGGAAATCGGGG
CTCGGTAATTTTATCGTGTCGTGGGCTTAAGCTCCTTCCCTCACAACGCA
TCCGAGTCGTAAAGGTGATTCTTTACGCTCTGGGGTTAAAAGGAAAGTTA
TCCGAGGGTCATGGAACTTGCCTGGCTGCGTTACGAGGGGTGTTGGTTGA
ATGTATTGAGTAATAATTGGGGGAGTCAACACCTCGTTCAAAAAGTCAAA
ACATTTAAAATACAAGAAAAAAAAAAATCGATAATACCGCGTTTTTACTC
GTCTTACGATATCCTTGCTCCGTTTCTGTTGGATGAACTATCGGATTGAC
TGCCCCGCCGCCATTTGTAGACAATCCGATACAGGGGAATCCAGGTCGAG
AACGGTGGGAAGCTGTTTGGAGACATCCAGTTCGCGACAGAAGATGATGA
ATCCTGAGTGGTAACAGAAATGCGCCCGTCTCCGCTTGTTGGCAGTCTGG
TTTGAACTACATGTGAAGCTTCTGGCTGTGCCCACCTCCTGTGTAGTACG
TAGCGCAGCTTTTGGGCTGCTGCGATTTGTATACACCGCGGAAGAAGAGG
CGTTATTTACTCCAGAGAGTCGTGGACAGGGTGTAACGACAAATAGCCGC
ACGGTATTAAAGTAGGGATTTTTCGGAAGAGCCTTTTTTAACTAAGTCCA
TTTATTCGTCGTTTTGACTGGATGACGATGTCAACTGCGTTACGCAGGGA
GACCTACGAGCTTGAACTTTGGCAAGAGCTACTAGCGTTGGGTAGCAACT
TAACCTTATATTACTGACAACCAGTGCTTGATTCTTAAAAGACCGAAGTA
TTTGTAACAGAGGTAGTTGCGGAAAATCTTGGGAGGCATTCCATCTGGTG
GAATCGTTGGTTTTTATATGTCGGTGGGTGCTGGCGTTGCCCGGCTACCC
GAATACTGGTGTAGGTAGTGCAGATGTATGTTGGGCATGGAAGTACACTT
CTGTGCACCTGATAGCATTTTAATCATTTCAACGCGAGCGGAGGGCAGCA
GTGCCAGACACGAATGAGGCTGTGGTCGAACACTTGTACCAGTAATTTTC
CCCTGTCGTGTACCCTCGCGCGTTGCAGTGTTCCGGAGTTTATCACCATA
TTGACATGTCATTCCTTGCTCTTTTCTTTTTCTGTTTTTTGCTCACGCGA
GAGGCAGAGTTCGTTCCTGCTGTTGCAAAGAGCGTGATGGGGTTGTTTTC
GTCAGCAGGTGGTTTCCAATATTGTAGCAGTCGGTGCCCCAGGTTGTGTA
GTGTATTTTGTGTGGGAGGTCTCGAGTAGATCTAAGAGTATTTTCAACGC
TACCCGTTAAGCGTAATAGATGTGTTATATTAAAAAATGTGTGGGGGTAC
GTGCTGCCATTCTGCTGTGGCCCGGGCGGTTTTTCGAAATGTTGATCAGG
GAAAATACAGTGCACTTAAACGGAGTTATTTTTGAACATTTTTACGAGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2536:11802..20050+

>mRNA_H-paniculata_contig2536.6903.1 ID=mRNA_H-paniculata_contig2536.6903.1|Name=mRNA_H-paniculata_contig2536.6903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig2536:11802..20050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACTCCGACAACGTCTGGACGGGTGATCATTGGCCAGATGGCGAC
TCCGACAACGTCTGGACGGGTGATCATTGGCCAGGGGATCGTTGTGAAGG
GAGACATCAAAAACTGCGAGGAGGTTATCGTCCGCGGATTTTTCGATGCT
GGTAATGTGGAGGCTAAATCAGTTGTCGTAGAGGCAAACGGGGATCGTTG
TGAAGGGAGACATCAAAAACTGCGAGGAGGTTATCGTCCGCGGATTTTTC
GATGCTGGTAATGTGGAGGCTAAATCAGTTGTCGTAGAGGCAAACGGGGT
ACTCACCGGGGCCACCCGGGCACAGAACGCTAAGATCGCGGGAAAGTTCG
ATGGTAACCTTCGGCTCACGGAGGGACTTAACGTCACCAGCAGCGGCGAG
GCAAAGGGGGGGTACTCACCGGGGCCACCCGGGCACAGAACGCTAAGATC
GCGGGAAAGTTCGATGGTAACCTTCGGCTCACGGAGGGACTTAACGTCAC
CAGCAGCGGCGAGGCAAAGGGGACAATCCGATACAGGGGAATCCAGGTCG
AGAACGGTGGGAAGCTGTTTGGAGACATCCAGTTCGCGACAGAAGATGAT
GAATCCTGAACAATCCGATACAGGGGAATCCAGGTCGAGAACGGTGGGAA
GCTGTTTGGAGACATCCAGTTCGCGACAGAAGATGATGAATCCTGA
back to top