mRNA_H-paniculata_contig2535.6901.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2535.6901.1
Unique NamemRNA_H-paniculata_contig2535.6901.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: D7G7B3_ECTSI (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B3_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 2.980e-91
Identity = 197/416 (47.36%), Postives = 248/416 (59.62%), Query Frame = 1 
Query:    1 ANMAQVTLGVGIASFFLALTLR-----RLRREHKERHRCSARARALMGKEFPEHIRVHIARLGDPEYICLAIAENKLTIGPLLEKLTEVRSGSWCPRGI----------VTTAADVATTTDESVTXADECAET-TAGEGF-VSAEGEADEPAGRQ--------SRGG---------GGPDLPSLAPQSAA---SGGGLA-MGYDAPWGTAWVRRELAIMMEKRMFGRP-VDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMAGVTAW-----PVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNASFRSIGSLLNANNGPGMGNDVHILYGPGKDLGVAGWRVSKLHS 1116
            A+ + + LG G+ S    L  R     R R     R R S R+  L     P HI  HIARLGDP+YICL+IAENKLT+GPLL+KL E    +   RG+          +TTA  + +  +  +  A + ++  +AGEG  + A   A  P  R         S  G         G P   +++  S A   S   LA MGY    G  WVRRE+A MM +RMF R  VDP+ + + +G T+ LRLL+VALTE G+GCLIP PYF GFD  L +AGV AW     P  G   VEGGVD  I PR L+  LR+AR+     E+RVLL+TSPHNPTGR+YSPKAL++AV+W R+RGL +VVDE+YAN +HR NASFRS+G LL A+   GMG DVH+LYG  KDLGVAGWRV  L+S
Sbjct:   10 ASSSSLALGAGLTSLVAVLAYRIGVIERRRHLSGARWRSSKRSAELTRGGTPAHILEHIARLGDPDYICLSIAENKLTVGPLLDKLREFSVTAAQFRGVGEPPRRRRASITTA--ITSDNNRGLNVAGDSSDVDSAGEGAALGAVATATTPPARPVDISPADISTAGAVVASPVVMGEPAHSTISSTSTAVAPSSHRLASMGYGEVRGPLWVRREIAEMMGRRMFHRDDVDPDNVVIAAGATSVLRLLVVALTEEGEGCLIPGPYFPGFDKVLNIAGVRAWVANRDPAEGGGGVEGGVDDGIFPRVLETALRRARSSGV--EIRVLLITSPHNPTGRMYSPKALLSAVSWGRRRGLQIVVDEVYANCIHRPNASFRSVGGLLMADGAAGMGGDVHVLYGLSKDLGVAGWRVGVLYS 421
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A7Y1YC91_9ACTN (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1YC91_9ACTN)

HSP 1 Score: 120 bits (302), Expect = 4.360e-27
Identity = 77/209 (36.84%), Postives = 113/209 (54.07%), Query Frame = 1 
Query:  484 AMGYDAPWGTAWVRRELAIMMEKRMFGRPVDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMAGVTAWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNASFRSIGSLLNANNGPGMGNDVHILYGPGKDLGVAGWRVSKL 1110
            ++GYDA  G+   R +LA  M + + GR +DPE L+V++G  + L LL   L  PG G L+P P + GF   +      +   V  S+ +G     ++P  L   L  A        V+ LL T+P+NP G +YS + +   +AWA KRG+HVV+DEIYA +V   +A F S G+ L     P MG  +HI++   KD G++G R   L
Sbjct:   71 SLGYDAMIGSIHFRSQLAEFMGRTILGRKIDPEDLAVLNGAGSVLELLFYVLCNPGDGVLVPTPSYTGFWADIETRDELSIIPVHCSSEDGFR---LTPHLLDTALDNA-----DRPVKALLYTNPNNPLGEVYSAEQVHEILAWAHKRGIHVVLDEIYALSVFG-DADFTS-GAFLR----PDMGELLHIVWAFSKDFGMSGLRCGVL 265
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A388KVU6_CHABU (Aminotran_1_2 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KVU6_CHABU)

HSP 1 Score: 122 bits (305), Expect = 1.310e-26
Identity = 83/220 (37.73%), Postives = 114/220 (51.82%), Query Frame = 1 
Query:  493 YDAPWGTAWVRRELAIMMEKRMFGRPVDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMAG-VTAWPV----VGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNAS-FRSIGSLLNANNGPGMGND------VHILYGPGKDLGVAGWRVSKLHS 1116
            YD   G   +R  LA MME+   G  VDP  + + SGVTA L L   A+ +PG GCLIP PYF  FD  +++   V   PV    +GT         + +   L+     A  K G H  R+LLLT+P NP G LY  + L   + WA ++GLHV+ DEIYAN+    + S F S+  + N     G+  +      VH  YG  KD G++G+RV  +H+
Sbjct:  402 YDNMCGGERLRCALARMMERTFMGVAVDPAHICISSGVTAVLDLFFFAVCDPGDGCLIPAPYFPAFDNDMSVRNAVVPIPVQPRDIGTY--------IPTAEDLENAYSLAEEK-GVHP-RMLLLTNPGNPLGTLYPEETLCELLVWAMEKGLHVLTDEIYANSKFGEHTSRFVSMAKVGNQAVAKGLVREDELKERVHTAYGMSKDFGLSGFRVGCIHT 611
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BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A7S0SPW7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SPW7_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 2.630e-26
Identity = 82/234 (35.04%), Postives = 120/234 (51.28%), Query Frame = 1 
Query:  439 LPSLAPQSAASGGGLAMGYDAPWGTAWVRRELAIMMEKRMF----GRPVDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMA-GVTAWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNA--SFRSIGSL-LNANNGPGMGNDVHILYGPGKDLGVAGWRVSKLHS 1116
            + S  PQS A+       YD   G+  +R  +A  M++ +        VDP  L + +G  A L  L +++T PG G LIP PY+  FD  L +  G  A PV G         A + P  +Q       A A    V+ LLLT+P NP G +Y+P+ L AA+ WA  R +HVVVDE+YA++V   ++  +   + +L + A+ GP     +H++YG  KD   +GWRV  L S
Sbjct:   60 MASEQPQSTAA-------YDNMRGSEKLRTAMAAHMQRVLAPSAAAGTVDPADLCISTGCGAILDNLFLSITAPGDGVLIPAPYYPAFDNDLRVRNGTKALPVSGDR-------ADVLPTPVQLTAAVDAAAAAGCAVKALLLTNPSNPLGVVYTPEELTAALQWALDRDIHVVVDEVYASSVFAASSEDALPFVSALAMEAHLGPAAKTRLHVVYGLSKDFCASGWRVGVLRS 279
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A2R6XV55_MARPO (Aminotran_1_2 domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XV55_MARPO)

HSP 1 Score: 118 bits (295), Expect = 7.100e-26
Identity = 76/207 (36.71%), Postives = 102/207 (49.28%), Query Frame = 1 
Query:  520 VRRELAIMMEKRMFGRPVDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMA-GVTAWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNA----SFRSIGSLLNANN---GPGMGNDVHILYGPGKDLGVAGWRVSKLHS 1116
            +R  +A MME+   G  V+   + + SGVTA L L   A  + G GCLIP PYF  FD  +A+  GV   PV      +        P A +       A+    + RVLL+T+P NP G LY    L   + WA  RGLHV+ DEIYAN+    +A    S   + S+  A N      +   VH  YG  KD G++G+RV  LH+
Sbjct:  103 LRNAIAKMMERTFMGVEVNTSNICISSGVTAVLDLFFFATCDAGDGCLIPAPYFPAFDNDMAIRNGVEPIPV------QPADTQTYIPTATEMEAAAVAAEIKGAKPRVLLVTNPGNPLGTLYPESTLKELLVWAVNRGLHVLCDEIYANSKFGTSANEFISMEKVASIAVAENLLSQKSVAERVHTAYGMSKDFGMSGFRVGCLHT 303
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BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A0L0DPZ2_THETB (ACC synthase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPZ2_THETB)

HSP 1 Score: 116 bits (291), Expect = 1.280e-25
Identity = 69/172 (40.12%), Postives = 99/172 (57.56%), Query Frame = 1 
Query:  583 KLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMAGVTAWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNASFRSIGSLLNANNGPGMGNDVHILYGPGKDLGVAGWR 1098
            ++++++GV  AL +L+ A+ +PG+G L+P P +AGF   L      A  +   S      +  ++P AL      A   A    +R LLL +P NP GR+YS   L  AVAWAR +G+H+VVDEIYA +V   NASF S  + L  +    +G+DVH+L+G  KD GV G R
Sbjct:   99 QVALVAGVGTALEMLMYAIADPGEGVLVPAPTYAGFYMDLGTRDELAIVLAQRS---ADNEWALTPEALD-----AAWDAADVPIRALLLCNPDNPLGRVYSHDELTTAVAWARAKGIHIVVDEIYALSVFADNASFVSAAATLGPDT---LGDDVHLLWGFSKDFGVGGLR 259
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A4R7TH12_9ACTN (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Kribbella TaxID=182639 RepID=A0A4R7TH12_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 3.750e-25
Identity = 78/209 (37.32%), Postives = 110/209 (52.63%), Query Frame = 1 
Query:  508 GTAWVRRELAIMMEKRMFGRPVDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTL-AMAGVT---AWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNASFRSIGSLLNANNGPGM--GNDVHILYGPGKDLGVAGWRVSKLHS 1116
            G+  +RRELA  + + + G  VDP  L V+ G  AAL +L  AL +PG G ++P PYFAG D+   A AGV    AWP  G           ++  A+ R +R+A        VR + L SP+NP G  Y    L A    A    LH++ DEIYA +VH  +ASF S  SL+     P       +H+++G  KD G++G++V  LH+
Sbjct:   59 GSPSLRRELARFLTE-LQGPEVDPADLVVLGGAGAALEILAFALCDPGDGIVVPAPYFAGVDFAFSARAGVEVVPAWPETGLQ---------LTAEAVDRAIREAPVP-----VRAVALLSPNNPLGVTYDEPTLRAVAEVAASHDLHLIADEIYAGSVHG-SASFVSTASLV-----PSALPAERLHVVWGFAKDFGLSGFKVGVLHT 246
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A1Z5J6Q1_FISSO (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6Q1_FISSO)

HSP 1 Score: 114 bits (284), Expect = 2.830e-24
Identity = 64/185 (34.59%), Postives = 100/185 (54.05%), Query Frame = 1 
Query:  565 RPVDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLA-MAGVTAWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNASFRSIGSLLNANNGPGMGNDVHILYGPGKDLGVAGWRVSKLHS 1116
            R V P+ + + +G    L  L  AL      CLIP PY+A F+  ++ MAG+   P+    N     +AV  P   +  L  + A    H  + +LL++P+NP G +Y  + L   V WAR +G+H ++DEIYA + H+ N  F+SI  +LN +    +GNDVH+++   KD G +G R   ++S
Sbjct:  152 RAVQPKHVGLGAGAAPLLNSLFFALGNASDACLIPAPYYAAFENDMSVMAGIV--PIAVKQN-----NAVAGPTNAELDLAYSVAMTKGHTPKFVLLSNPNNPLGTIYRAEVLQRIVLWARSKGMHTIIDEIYALSTHQANHHFQSIIRVLNND----LGNDVHMVWAFSKDFGASGIRAGIIYS 325
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A662DIS2_9ACTN (Aminotran_1_2 domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662DIS2_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 1.230e-23
Identity = 69/211 (32.70%), Postives = 112/211 (53.08%), Query Frame = 1 
Query:  484 AMGYDAPWGTAWVRRELAIMMEKRMFGRPVDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMAGVTAWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNASFRSIGSLLNANNGPGMGNDVHILYGPGKDLGVAGWRVSKLHS 1116
            ++ YDA  G+  +R ++A    + ++GR VDP+++ V++G  + L  L   ++ PG G L+P P +AG+   L          V TS+ +G     +SP  L+     A        V  LL+T+P NPTGR+   K + AA+ WAR   LHVVV+EIYA +VH  +  +  +G +++      +  DVH ++G  KD  ++G R   + S
Sbjct:   96 SVAYDAMIGSQNLREQIASFASEHVWGRSVDPDRVIVLAGGGSILETLFYVISSPGDGVLVPTPSYAGYWADLETRDNLKVVPVHTSSEDGFK---LSPALLESAYIDAGVP-----VSALLITNPDNPTGRMMPSKDMNAAIQWARSHDLHVVVNEIYALSVHG-DEPYEPVGRVID-----NLATDVHEVWGFSKDFAMSGLRCGVMTS 292
[Close]
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Match: A0A7S2UEY1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEY1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.320e-23
Identity = 68/184 (36.96%), Postives = 106/184 (57.61%), Query Frame = 1 
Query:  571 VDPEKLSVMSGVTAALRLLLVALTEPGQGCLIPVPYFAGFDYTL-AMAGVTAWPVVGTSNVEGGVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVAAVAWARKRGLHVVVDEIYANTVHRLNAS-FRSIGSLLNANNGPGMGNDVHILYGPGKDLGVAGWRVSKLHS 1116
            V P+ +++ SG  + L  L  +L E G   LIP PY + F+Y + A+AG    PV   + + G      SP  L      A  K G + V++LLL +P++P G +YSP  +   + WAR R +HV+VDEIYA +VH+ N S F S+  LL+ +    +G +VH+++G  KD G +G+R+  L++
Sbjct:  174 VSPDCIALGSGCASLLNHLFFSLAEKGDAVLIPAPYHSAFEYDMQAVAGCVPIPVQMQNPMHGP-----SPEELMMAAYAAE-KQGLN-VKILLLNNPNDPLGVIYSPTVMRHTIEWARSRDMHVIVDEIYALSVHQKNNSGFESVIKLLDND----LGKNVHMIWGLSKDFGASGFRIGMLYT 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2535.6901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7B3_ECTSI2.980e-9147.361-aminocyclopropane-1-carboxylate synthase n=2 Tax... [more]
A0A7Y1YC91_9ACTN4.360e-2736.84Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A388KVU6_CHABU1.310e-2637.73Aminotran_1_2 domain-containing protein n=1 Tax=Ch... [more]
A0A7S0SPW7_9CHLO2.630e-2635.04Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A2R6XV55_MARPO7.100e-2636.71Aminotran_1_2 domain-containing protein n=1 Tax=Ma... [more]
A0A0L0DPZ2_THETB1.280e-2540.12ACC synthase n=1 Tax=Thecamonas trahens ATCC 50062... [more]
A0A4R7TH12_9ACTN3.750e-2537.321-aminocyclopropane-1-carboxylate synthase n=2 Tax... [more]
A0A1Z5J6Q1_FISSO2.830e-2434.591-aminocyclopropane-1-carboxylate synthase n=2 Tax... [more]
A0A662DIS2_9ACTN1.230e-2332.70Aminotran_1_2 domain-containing protein (Fragment)... [more]
A0A7S2UEY1_9STRA1.320e-2336.96Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2535contigH-paniculata_contig2535:16722..20534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score114.8
Seed ortholog evalue8.8e-23
Seed eggNOG ortholog71139.XP_010035004.1
KEGG koko:K14270
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.aminotransferase
EggNOG OGs37NW4@33090,3GFE4@35493,COG0436@1,KOG0256@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01007
Exons5
Model size1116
Cds size1110
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2535.6901.1prot_H-paniculata_contig2535.6901.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2535 16728..20534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.295983-UTR-H-paniculata_contig2535:16721..167271622929747.295983-UTR-H-paniculata_contig2535:16721..16727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2535 16722..16727 +
1691480993.8452222-UTR-H-paniculata_contig2535:16721..167271691480993.8452222-UTR-H-paniculata_contig2535:16721..16727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2535 16722..16727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.3104372-CDS-H-paniculata_contig2535:16727..169401622929747.3104372-CDS-H-paniculata_contig2535:16727..16940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 16728..16940 +
1691480993.8573453-CDS-H-paniculata_contig2535:16727..169401691480993.8573453-CDS-H-paniculata_contig2535:16727..16940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 16728..16940 +
1622929747.3260965-CDS-H-paniculata_contig2535:18025..184261622929747.3260965-CDS-H-paniculata_contig2535:18025..18426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 18026..18426 +
1691480993.8671348-CDS-H-paniculata_contig2535:18025..184261691480993.8671348-CDS-H-paniculata_contig2535:18025..18426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 18026..18426 +
1622929747.34104-CDS-H-paniculata_contig2535:19199..193821622929747.34104-CDS-H-paniculata_contig2535:19199..19382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 19200..19382 +
1691480993.8768146-CDS-H-paniculata_contig2535:19199..193821691480993.8768146-CDS-H-paniculata_contig2535:19199..19382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 19200..19382 +
1622929747.3549762-CDS-H-paniculata_contig2535:19662..198131622929747.3549762-CDS-H-paniculata_contig2535:19662..19813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 19663..19813 +
1691480993.8876278-CDS-H-paniculata_contig2535:19662..198131691480993.8876278-CDS-H-paniculata_contig2535:19662..19813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 19663..19813 +
1622929747.3661795-CDS-H-paniculata_contig2535:20372..205341622929747.3661795-CDS-H-paniculata_contig2535:20372..20534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 20373..20534 +
1691480993.8956714-CDS-H-paniculata_contig2535:20372..205341691480993.8956714-CDS-H-paniculata_contig2535:20372..20534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2535 20373..20534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2535.6901.1

>prot_H-paniculata_contig2535.6901.1 ID=prot_H-paniculata_contig2535.6901.1|Name=mRNA_H-paniculata_contig2535.6901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=370bp
MAQVTLGVGIASFFLALTLRRLRREHKERHRCSARARALMGKEFPEHIRV
HIARLGDPEYICLAIAENKLTIGPLLEKLTEVRSGSWCPRGIVTTAADVA
TTTDESVTTADECAETTAGEGFVSAEGEADEPAGRQSRGGGGPDLPSLAP
QSAASGGGLAMGYDAPWGTAWVRRELAIMMEKRMFGRPVDPEKLSVMSGV
TAALRLLLVALTEPGQGCLIPVPYFAGFDYTLAMAGVTAWPVVGTSNVEG
GVDAVISPRALQRGLRQARAKAGKHEVRVLLLTSPHNPTGRLYSPKALVA
AVAWARKRGLHVVVDEIYANTVHRLNASFRSIGSLLNANNGPGMGNDVHI
LYGPGKDLGVAGWRVSKLHS
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mRNA from alignment at H-paniculata_contig2535:16722..20534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2535.6901.1 ID=mRNA_H-paniculata_contig2535.6901.1|Name=mRNA_H-paniculata_contig2535.6901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3813bp|location=Sequence derived from alignment at H-paniculata_contig2535:16722..20534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAACATGGCCCAGGTTACGCTGGGCGTTGGAATCGCAAGCTTCTTTCT
CGCCCTGACCCTGAGAAGGTTGAGGAGAGAGCACAAGGAGCGCCACCGCT
GTTCGGCCCGCGCGCGAGCCCTCATGGGTAAAGAGTTTCCTGAGCACATC
AGAGTGCACATTGCCAGGTTGGGAGACCCAGAGTACATCTGTTTGGCTAT
CGCAGAGAACAAGCTCACGGTGAGTTGTGTATCGAGTGTGCAAATAGTGC
TCTCTGGATGCCTTCTTCGTTGAATCATGACGTCAATAACTACATAGTAG
CTGGGTCAGAGCCGCGGGTGTTCATGGGGAATATAGTCGTCAGAAAGTTA
CATGCTGCCATCATTTCCATCGTGTATGAATAAGTGGGACGGTTGCCCCC
CGCACTGCGCGATGGTGCGCGGCACGAACCGAGGCCTGAATGTCTACCTC
ATCTCCAGCCGTTGGATGACCACAAACATCACAATTGGAAATTGGCGTCA
TGGGAGATGATCTAATGCGAACAAAAATGGGAGTTTAGTTTGACGGAGAC
ATTCTTTCAAATTCGCATTCATTTTACTGTGCTACACTCGTGTTTGGTTC
ATGTAAAAAAGCGAACGCATTGCCGGTCTATCGTTTCTAGATTCACATGA
ACGCACCTCAATAACGATGTTCTTCCCCCCTGCCGCGCCCCCTTCTCGAT
GTTTGGTGCATAATAGTGGGCCTTTCAAACGGCAATGCAAATGAGAAAAG
GAACCTAAACGAAAATAATCGCGTAGTGTTTCATGTCCTGTCGCCTCGGA
CCGCTTCCCTTGTTTTCTAAGCATGCAGCTTTGAATTTTCAGCTGCATTA
CGTCAGCATGCCAAGAAGATATCCATGCTATTTGACGGGAAAGGGGTCCT
GGTTGTTGTTTCGGAACATATTTTCAACTCTATATTCGAATATCTCTTAA
TAAATGAATCTTGATGCAAGCATGGCGAGTCACTGTGAGAGCAGCGAGCT
CGTGGGTCGAGGACAAGCATGGACTGCACGAGCTTAGTCGCGGCTTTACT
GCTACTTTTTCTTTACAACTCTTTTGTTTTGAGATCCTATAGAAAATAAC
AAACCATTATTCCCCCCCCCCCCACGTGTTTACTATATGAAGAGGGGTTT
GGATTATGTGTGCAACGCGGAATTCACTAAAACTAATTGCGCCCGTGTCC
AAACTTTAGCTCTTACAAAATATTTCTATTTCTGCTGCTCAACCATGTTT
TATCATCCATGAATACTTGACACATTACTCCCCCTCCCCCTATCCAACGA
ACAGATCGGCCCTTTGTTGGAGAAGCTGACTGAGGTACGCAGTGGCAGCT
GGTGTCCGCGGGGAATAGTGACCACAGCTGCAGACGTAGCGACAACTACC
GACGAGTCGGTCACGACTGCCGACGAATGTGCAGAAACGACCGCCGGGGA
GGGTTTCGTTTCGGCGGAAGGGGAAGCAGACGAACCGGCCGGGCGACAGA
GTAGAGGCGGTGGGGGGCCAGATTTGCCGTCATTGGCACCCCAATCGGCT
GCGTCGGGGGGGGGCTTAGCCATGGGCTACGATGCGCCTTGGGGGACGGC
GTGGGTGCGGCGTGAGTTGGCGATAATGATGGAAAAGCGCATGTTCGGGC
GACCCGTGGATCCGGAGAAGCTGTCCGTCATGAGTGGGGTAACGGCTGCG
CTCAGGTACAATGTAACAGACTTGAACAGCAAGATGCATTTTTCCATGGC
AAACAATGTTTATTTTACATGCAGTTCAGATGTTTCTTCGTAATGATGAA
GTTAGCGTGCGTTTTGATCTGTTTGTAGGGTAATGTTGCGGTCTTCAAGT
TGCCGTATTTTCGGGCGGTATTGTTCTGCAGTGTTGTTGATGGGTTCTTT
GGAAGGGTTATTACATAAAGCGGTACATGCGCATTATTTTGAAAAGACTA
CTTTCTGGTGATGCGGATAGTCGTCGTTCCGGATCATTTTTCAAGTCTGT
GCTCAAGTCGCTTGCGAAAAAGAGATCTTGACGGACGTTATTTTTGTGTT
CCTTGCGAATGTCGCGAGGTTTGTTGTGCCTGGGTCGAACACGGAACACA
GATTTTGCACGGGCGCAGTCGTGGCTCTTCACTGCTAGCTCATACCAGTA
CGTAATGTTGGATTTTGCATGAGTCCTTTGTGTTATGTAGGCCTGTAGTA
TCTTGCCACGGAGAGTACCATGACATCGAATTACTCATACCCCAGTAGCC
ACCGGTACCTTAGTGCCGACAATGGAGGGTAAAAGAGGCGACAAGCGCCG
CTCTCGATTCACCGTTGAGAGAGGTATCTGCAGTCGTCTACCTTATGAAA
ATTCGATTGGTGGGAATTTTAGTAGATCGCTCGAACCACGTCACACTGAA
GTTTGTGAATCCCGTTGACCAGTACACCGCCACTTCCCGCTACTTCCCAC
GGCCGCCGCCGCTGCTGCTTTGCCAAAGGCTGCTGCTCGTAGCACTTACC
GAACCAGGGCAGGGGTGCCTAATACCCGTGCCTTACTTTGCGGGGTTCGA
CTATACGCTGGCAATGGCGGGGGTCACGGCATGGCCGGTGGTGGGAACTT
CAAACGTCGAGGGTGGTGTGGACGCGGTGATATCCCCTCGTGCGCTGCAG
AGAGGGCTCCGGTGGGTGCAAACTACTGTAGCAGTGGCGTTGATTATCTT
TGTCAGCAGCGGAAGGTAGCCGTTAAGTCTGGTGGGTAGCAGATAAAAAT
ATCATGTGGTTTCAGCATTCGCTCTTGAAGGCACCCCTTGTGCCTCGCTG
TCTTTGTCTGTTTTTGTCCGCCTGTCTCTGTCTCTCTTTCTTTCCCCTTC
TCCTCTCTCTCTCCTCTCTTGTGAGCCCGACCTCGGACTACCTCCAAAAA
CTAATTGTAGACCTTAACTCCGTGCATGCGCCGCGTCGCAGGCAAGCCAG
AGCAAAGGCCGGAAAACACGAGGTCCGCGTGCTCTTGCTCACGTCGCCTC
ACAACCCCACCGGGAGGCTCTACTCGCCCAAAGCGCTTGTCGCCGCAGTA
GCGTGGGCACGCAAGCGGGGGCTTCACGTGGTCGTCGATGAGGTGATCTG
TCGGGGAGATTTTATGTGATCTTTTTAGATATATGCTGTCGACCTGTGTG
ACGAACTGGACGTGCAGACTTACTCACCCGATAGTTGAAATAACCACTCA
AGTCCCCCCTCCCTTAGTGTCGTCAGCGTGTGGATTAAGTAATTCAGTCG
CGTTGGCAATAGTGAGCATACAGCTATATATAGCTATACGTTTTGTTCAA
CGGTTACACACTGTTGTGTTTTCTATTTTACTGTCTTCTGCTTGTTCCAA
ATTGTGTTCCTTGATGCTGGTGAACTCTTATTGTCCTCGGCAATTGGCAC
GTGTGGTATTGTCACCATGTTCGTATGTAGTTTGTTCTCTACGGTTAAAT
CTTGTCCCTGCATGAAATGCCACCTTACCGTTTCCCCTAATTTTGTACCG
TCTTTCTCCCTCTTCTCGCCCTTCTCCCTCTTTCATTTCCCCTTGTTCGC
ACGCTCGATTTTCCTCTGTTACTTGGGGATGATCAATTGGCATCGTTCCC
ATCAATTGAAAAAAACATCACCCTGTGAATGGATGGATTTGATTGTCCAA
GATATATGCCAATACTGTCCATAGACTTAATGCCTCATTCAGGAGCATTG
GGAGTCTTCTGAACGCTAACAATGGTCCTGGCATGGGCAACGATGTCCAC
ATTCTCTATGGTCCCGGAAAGGACCTGGGGGTAGCTGGATGGAGGGTAAG
TAAGCTCCATTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2535:16722..20534+

>mRNA_H-paniculata_contig2535.6901.1 ID=mRNA_H-paniculata_contig2535.6901.1|Name=mRNA_H-paniculata_contig2535.6901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at H-paniculata_contig2535:16722..20534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCAGGTTACGCTGGGCGTTGGAATCGCAAGCTTCTTTCTCGCCCT
GACCCTGAGAAGGTTGAGGAGAGAGCACAAGGAGCGCCACCGCTGTTCGG
CCCGCGCGCGAGCCCTCATGGGTAAAGAGTTTCCTGAGCACATCAGAGTG
CACATTGCCAGGTTGGGAGACCCAGAGTACATCTGTTTGGCTATCGCAGA
GAACAAGCTCACGATGGCCCAGGTTACGCTGGGCGTTGGAATCGCAAGCT
TCTTTCTCGCCCTGACCCTGAGAAGGTTGAGGAGAGAGCACAAGGAGCGC
CACCGCTGTTCGGCCCGCGCGCGAGCCCTCATGGGTAAAGAGTTTCCTGA
GCACATCAGAGTGCACATTGCCAGGTTGGGAGACCCAGAGTACATCTGTT
TGGCTATCGCAGAGAACAAGCTCACGATCGGCCCTTTGTTGGAGAAGCTG
ACTGAGGTACGCAGTGGCAGCTGGTGTCCGCGGGGAATAGTGACCACAGC
TGCAGACGTAGCGACAACTACCGACGAGTCGGTCACGACTGCCGACGAAT
GTGCAGAAACGACCGCCGGGGAGGGTTTCGTTTCGGCGGAAGGGGAAGCA
GACGAACCGGCCGGGCGACAGAGTAGAGGCGGTGGGGGGCCAGATTTGCC
GTCATTGGCACCCCAATCGGCTGCGTCGGGGGGGGGCTTAGCCATGGGCT
ACGATGCGCCTTGGGGGACGGCGTGGGTGCGGCGTGAGTTGGCGATAATG
ATGGAAAAGCGCATGTTCGGGCGACCCGTGGATCCGGAGAAGCTGTCCGT
CATGAGTGGGGTAACGGCTGCGCTCAGATCGGCCCTTTGTTGGAGAAGCT
GACTGAGGTACGCAGTGGCAGCTGGTGTCCGCGGGGAATAGTGACCACAG
CTGCAGACGTAGCGACAACTACCGACGAGTCGGTCACGACTGCCGACGAA
TGTGCAGAAACGACCGCCGGGGAGGGTTTCGTTTCGGCGGAAGGGGAAGC
AGACGAACCGGCCGGGCGACAGAGTAGAGGCGGTGGGGGGCCAGATTTGC
CGTCATTGGCACCCCAATCGGCTGCGTCGGGGGGGGGCTTAGCCATGGGC
TACGATGCGCCTTGGGGGACGGCGTGGGTGCGGCGTGAGTTGGCGATAAT
GATGGAAAAGCGCATGTTCGGGCGACCCGTGGATCCGGAGAAGCTGTCCG
TCATGAGTGGGGTAACGGCTGCGCTCAGGCTGCTGCTCGTAGCACTTACC
GAACCAGGGCAGGGGTGCCTAATACCCGTGCCTTACTTTGCGGGGTTCGA
CTATACGCTGGCAATGGCGGGGGTCACGGCATGGCCGGTGGTGGGAACTT
CAAACGTCGAGGGTGGTGTGGACGCGGTGATATCCCCTCGTGCGCTGCAG
AGAGGGCTCCGGCTGCTGCTCGTAGCACTTACCGAACCAGGGCAGGGGTG
CCTAATACCCGTGCCTTACTTTGCGGGGTTCGACTATACGCTGGCAATGG
CGGGGGTCACGGCATGGCCGGTGGTGGGAACTTCAAACGTCGAGGGTGGT
GTGGACGCGGTGATATCCCCTCGTGCGCTGCAGAGAGGGCTCCGGCAAGC
CAGAGCAAAGGCCGGAAAACACGAGGTCCGCGTGCTCTTGCTCACGTCGC
CTCACAACCCCACCGGGAGGCTCTACTCGCCCAAAGCGCTTGTCGCCGCA
GTAGCGTGGGCACGCAAGCGGGGGCTTCACGTGGTCGTCGATGAGGCAAG
CCAGAGCAAAGGCCGGAAAACACGAGGTCCGCGTGCTCTTGCTCACGTCG
CCTCACAACCCCACCGGGAGGCTCTACTCGCCCAAAGCGCTTGTCGCCGC
AGTAGCGTGGGCACGCAAGCGGGGGCTTCACGTGGTCGTCGATGAGATAT
ATGCCAATACTGTCCATAGACTTAATGCCTCATTCAGGAGCATTGGGAGT
CTTCTGAACGCTAACAATGGTCCTGGCATGGGCAACGATGTCCACATTCT
CTATGGTCCCGGAAAGGACCTGGGGGTAGCTGGATGGAGGGTAAGTAAGC
TCCATTCAATATATGCCAATACTGTCCATAGACTTAATGCCTCATTCAGG
AGCATTGGGAGTCTTCTGAACGCTAACAATGGTCCTGGCATGGGCAACGA
TGTCCACATTCTCTATGGTCCCGGAAAGGACCTGGGGGTAGCTGGATGGA
GGGTAAGTAAGCTCCATTCA
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