mRNA_H-paniculata_contig25340.6898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25340.6898.1
Unique NamemRNA_H-paniculata_contig25340.6898.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: D8LK76_ECTSI (Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (C-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK76_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.050e-47
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRALLGREGHSQV 345
            +VHTD EM IAL+AGARV+GVNNRNLHTF +DL+TTERVALVA   GVPW+ P E W ++RIVL ALSGI GP DV+RF  +GVSMVLVGETLMRA DPAK IR LLG E  + V
Sbjct:    6 EVHTDEEMTIALEAGARVVGVNNRNLHTFEMDLETTERVALVAAAMGVPWQNPTESWTRDRIVLSALSGITGPEDVKRFETMGVSMVLVGETLMRAEDPAKAIRTLLGEEDPTPV 120          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: A0A835YVM1_9STRA (Indole-3-glycerol phosphate synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.800e-32
Identity = 67/110 (60.91%), Postives = 81/110 (73.64%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRALLGRE 330
            +VHTDAEME+AL AGARVIGVN+RNLHTF LD++ T+RV+ +A   G+ W   G+      I L ALSGI GPA+V  F   GVSMVLVGETLMRA DP + IR LLG++
Sbjct:  213 EVHTDAEMEVALDAGARVIGVNSRNLHTFKLDMEATQRVSRIAAARGIRWGHRGD------IQLAALSGITGPAEVDAFRAAGVSMVLVGETLMRAADPREAIRTLLGQQ 316          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: W7TZP3_9STRA (Anthranilate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZP3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.420e-27
Identity = 67/116 (57.76%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGWEKER--IVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRALLGREGHSQ 342
            +V+   EMEIAL AGA+V+GVNNRNLHTF LDL TTERV  VA       R  G  W++ R  I L ALSGI+  ADV R+ + GVS+VLVGETLMRA DP+  +R LLG E  +Q
Sbjct:  252 EVNNLREMEIALDAGAKVVGVNNRNLHTFQLDLGTTERVMEVA-------RKRGLSWDRRRGDIALAALSGISVRADVARYEEAGVSVVLVGETLMRASDPSLAVRELLGLERDAQ 360          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: A0A7S3P4V6_9STRA (Indole-3-glycerol-phosphate synthase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4V6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.540e-27
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVA-------LVAGHFGVPWRTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRAL 318
            +VH D E+++ALKAGARVIGVNNRNLHTF +DL T+ERVA       L  GH   P              LCALSG++  ADV RF   G+ M L+GE+LMRA DPA+ I +L
Sbjct:   37 EVHADVELDVALKAGARVIGVNNRNLHTFEMDLATSERVAEQLTSRGLSFGHNANPMA---------EYTLCALSGMSVAADVHRFRQAGLGMCLIGESLMRAADPAQAIASL 140          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: A0A7S1BGG4_9STRA (Indole-3-glycerol-phosphate synthase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGG4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.560e-24
Identity = 54/106 (50.94%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRAL 318
            ++H   E+++AL AGARVIGVNNRNLHTF LDL TT+R A       + +   G G       LCALSG++  ADV R+  +GV MVL+GE+LMR+ DP   IR L
Sbjct:   21 EIHAAEELDVALDAGARVIGVNNRNLHTFELDLGTTDRAAEQLRKRNLKFDHMGSG--DVEYALCALSGMSDAADVDRYRKVGVGMVLIGESLMRSPDPGDTIRKL 124          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: A0A1Z5JHZ2_FISSO (Anthranilate synthase / indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHZ2_FISSO)

HSP 1 Score: 105 bits (263), Expect = 3.730e-24
Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRAL 318
            +VHT  E+++AL+AGARVIGVNNRNLHTF +DLQT+ER+A      G+ ++  G  + ++ + LCALSG++   DV R+  +G+ M L+GE+LMRA DP   I+ L
Sbjct:  283 EVHTTDELKVALQAGARVIGVNNRNLHTFQMDLQTSERMAAFLQKEGIVYQH-GSPYNQQ-VCLCALSGMSNAMDVHRYRQVGIGMCLIGESLMRASDPVAAIQNL 386          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: A0A1Z5KBL2_FISSO (Anthranilate synthase / indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBL2_FISSO)

HSP 1 Score: 105 bits (262), Expect = 5.100e-24
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRAL 318
            +VHT  E++ AL+AGARVIGVNNRNLHTF +DLQT+ER+A      G+ ++      + +++ LCALSG++   DV R+  +G+ M L+GE+LMRA DP   I+ L
Sbjct:  283 EVHTTEELKFALQAGARVIGVNNRNLHTFQMDLQTSERMAEFLQQEGIVYQHGSP--DDQQVSLCALSGMSNAMDVHRYRQVGIGMCLIGESLMRASDPVAAIQNL 386          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: K0REG0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0REG0_THAOC)

HSP 1 Score: 103 bits (256), Expect = 3.180e-23
Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPG--EGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRAL 318
            +VH   E+++AL AGARV+GVNNRNLHTF LDL  TE+VA      G+ +       G  K  + LCALSG++   DVQR+   GV M L+GE+LMRA DP+  IR L
Sbjct:  228 EVHALVELDVALSAGARVLGVNNRNLHTFKLDLSQTEKVAEELARRGLAFHHDKCCSGESKPDMTLCALSGMSNSHDVQRYRTAGVGMCLIGESLMRASDPSLAIRGL 335          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: A0A7S3XU25_HETAK (Indole-3-glycerol-phosphate synthase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU25_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 3.680e-23
Identity = 55/109 (50.46%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRALLGR 327
            +V T  EM+IAL  GARVIGVNNRNLH  SLD   TE  A  A   G  W   G+        LC+LSGI    D++R+ D+G S+ LVGE LMRA DP   +R LLG+
Sbjct:   34 EVATPEEMDIALDVGARVIGVNNRNLHDMSLDPARTELCAARAAKRGKRWGPGGD------FALCSLSGIFSREDMERYRDVGCSLALVGEALMRAPDPRATLRELLGK 136          
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Match: A0A448Z3F7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3F7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.950e-23
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 QVHTDAEMEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPW-RTPGEGWEKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRAL 318
            +VH D E+E+AL+AGA+VIGVNNRNLHTF +DL+TTE VA      G  +  +  E     +  LC+LSG++   DV R+  I V M L+GE+LMRA DP   I  L
Sbjct:  228 EVHADVELEVALQAGAKVIGVNNRNLHTFQMDLETTEHVADELTKQGCSFDHSSKEAASASKYTLCSLSGMSSAFDVDRYRSINVGMCLIGESLMRAADPKAAIAGL 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25340.6898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK76_ECTSI1.050e-4771.30Bifunctional Indole-3-Glycerol Phosphate Synthase/... [more]
A0A835YVM1_9STRA1.800e-3260.91Indole-3-glycerol phosphate synthase-domain-contai... [more]
W7TZP3_9STRA1.420e-2757.76Anthranilate synthase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S3P4V6_9STRA3.540e-2752.21Indole-3-glycerol-phosphate synthase (Fragment) n=... [more]
A0A7S1BGG4_9STRA2.560e-2450.94Indole-3-glycerol-phosphate synthase (Fragment) n=... [more]
A0A1Z5JHZ2_FISSO3.730e-2450.00Anthranilate synthase / indole-3-glycerol phosphat... [more]
A0A1Z5KBL2_FISSO5.100e-2449.06Anthranilate synthase / indole-3-glycerol phosphat... [more]
K0REG0_THAOC3.180e-2350.93Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3XU25_HETAK3.680e-2350.46Indole-3-glycerol-phosphate synthase (Fragment) n=... [more]
A0A448Z3F7_9STRA5.950e-2349.53Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25340contigH-paniculata_contig25340:313..1122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.4e-35
Seed eggNOG ortholog2880.D8LK76
Preferred nameTRP1
KEGG rclassRC00010,RC00944,RC00945,RC02148,RC02414
KEGG koko:K01656,ko:K01817,ko:K13501
KEGG ReactionR00985,R00986,R03508,R03509
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
Hectar predicted targeting categoryother localisation
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0004425,GO:0004640,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0016832,GO:0016833,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0033984,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494
EggNOG free text desc.phosphoribosylanthranilate isomerase activity
EggNOG OGsCOG0134@1,COG0135@1,KOG4201@2759,KOG4202@2759
EC4.1.1.48,4.1.3.27,5.3.1.24
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size357
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25340.6898.1prot_H-paniculata_contig25340.6898.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25340 313..1101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.0171254-CDS-H-paniculata_contig25340:312..4361622929747.0171254-CDS-H-paniculata_contig25340:312..436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25340 313..436 -
1691480993.708288-CDS-H-paniculata_contig25340:312..4361691480993.708288-CDS-H-paniculata_contig25340:312..436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25340 313..436 -
1622929747.0385525-CDS-H-paniculata_contig25340:889..11011622929747.0385525-CDS-H-paniculata_contig25340:889..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25340 890..1101 -
1691480993.7210736-CDS-H-paniculata_contig25340:889..11011691480993.7210736-CDS-H-paniculata_contig25340:889..1101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25340 890..1101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.050116-UTR-H-paniculata_contig25340:1101..11221622929747.050116-UTR-H-paniculata_contig25340:1101..1122Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25340 1102..1122 -
1691480993.7299666-UTR-H-paniculata_contig25340:1101..11221691480993.7299666-UTR-H-paniculata_contig25340:1101..1122Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25340 1102..1122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25340.6898.1

>prot_H-paniculata_contig25340.6898.1 ID=prot_H-paniculata_contig25340.6898.1|Name=mRNA_H-paniculata_contig25340.6898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MEIALKAGARVIGVNNRNLHTFSLDLQTTERVALVAGHFGVPWRTPGEGW
EKERIVLCALSGIAGPADVQRFSDIGVSMVLVGETLMRAVDPAKEIRALL
GREGHSQVEKYK
back to top

mRNA from alignment at H-paniculata_contig25340:313..1122-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25340.6898.1 ID=mRNA_H-paniculata_contig25340.6898.1|Name=mRNA_H-paniculata_contig25340.6898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=810bp|location=Sequence derived from alignment at H-paniculata_contig25340:313..1122- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTACACACCGACGCCGAGATGGAAATCGCGCTCAAGGCCGGCGCGCG GGTTATCGGCGTCAACAACCGTAACCTCCACACGTTCAGCCTCGACCTTC AAACCACGGAGAGAGTGGCGCTCGTGGCTGGCCACTTCGGCGTTCCATGG CGAACTCCGGGGGAAGGATGGGAGAAGGAGAGGATCGTGCTGTGTGCGCT GAGCGGCATCGCGGGACCAGCGGATGTGCAGAGGTAAGAGAGGGAAAGAA TGAGGAAGACAGCAGGGTTTGACTGGCTAGCTGGCTGGTTGGCTGGCTGG CTGTCTGTCTGTCTGCTGCGGTCAAACAAAATAATTGGAGGGAAAGCAAG CGTTCCAAGGAGAGCAGTTATAGATGTAAAGAAGGAAAAAAGCGCTCGTT TTTTTTTTGTTTTGTTTTTTCAGTTTGTGGTCAACGTTATTGGGGTAAAC CTTTCGTTTTTTATTGTATTATGGAGGATGACCATGGTGGTTGTGGTGAT GATTGTGATGACTCTTTTTTCTTTTTCTTTTTTTTTGTAATAGAGCAAGG AAAAACGTTTAACCGATATCTGCTACTTGCAACTTGACGTCGTGAACATT GCTGTTGTGTCGATGGTTTTGTAGATTATTTTCTGCTGTTGAAAAATTGT AATTTGCTTCGTGTTTTTCTTTTTTTTGGTGGTCAGGTTTAGCGACATCG GAGTGTCGATGGTGCTTGTCGGAGAGACACTCATGAGAGCGGTGGACCCC GCGAAGGAAATTCGCGCATTACTCGGAAGAGAAGGCCATTCACAGGTAGA AAAATACAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25340:313..1122-

>mRNA_H-paniculata_contig25340.6898.1 ID=mRNA_H-paniculata_contig25340.6898.1|Name=mRNA_H-paniculata_contig25340.6898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig25340:313..1122- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAATCGCGCTCAAGGCCGGCGCGCGGGTTATCGGCGTCAACAACCG
TAACCTCCACACGTTCAGCCTCGACCTTCAAACCACGGAGAGAGTGGCGC
TCGTGGCTGGCCACTTCGGCGTTCCATGGCGAACTCCGGGGGAAGGATGG
GAGAAGGAGAGGATCGTGCTGTGTGCGCTGAGCGGCATCGCGGGACCAGC
GGATGTGCAGAGATGGAAATCGCGCTCAAGGCCGGCGCGCGGGTTATCGG
CGTCAACAACCGTAACCTCCACACGTTCAGCCTCGACCTTCAAACCACGG
AGAGAGTGGCGCTCGTGGCTGGCCACTTCGGCGTTCCATGGCGAACTCCG
GGGGAAGGATGGGAGAAGGAGAGGATCGTGCTGTGTGCGCTGAGCGGCAT
CGCGGGACCAGCGGATGTGCAGAGGTTTAGCGACATCGGAGTGTCGATGG
TGCTTGTCGGAGAGACACTCATGAGAGCGGTGGACCCCGCGAAGGAAATT
CGCGCATTACTCGGAAGAGAAGGCCATTCACAGGTAGAAAAATACAAGGT
TTAGCGACATCGGAGTGTCGATGGTGCTTGTCGGAGAGACACTCATGAGA
GCGGTGGACCCCGCGAAGGAAATTCGCGCATTACTCGGAAGAGAAGGCCA
TTCACAGGTAGAAAAATACAAG
back to top