mRNA_H-paniculata_contig25333.6897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25333.6897.1
Unique NamemRNA_H-paniculata_contig25333.6897.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25333.6897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25333contigH-paniculata_contig25333:902..2481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.9434826-CDS-H-paniculata_contig25333:901..10421622929746.9434826-CDS-H-paniculata_contig25333:901..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25333 902..1042 +
1691480993.676922-CDS-H-paniculata_contig25333:901..10421691480993.676922-CDS-H-paniculata_contig25333:901..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25333 902..1042 +
1622929746.9714413-CDS-H-paniculata_contig25333:2361..24811622929746.9714413-CDS-H-paniculata_contig25333:2361..2481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25333 2362..2481 +
1691480993.695412-CDS-H-paniculata_contig25333:2361..24811691480993.695412-CDS-H-paniculata_contig25333:2361..2481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25333 2362..2481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25333.6897.1prot_H-paniculata_contig25333.6897.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25333 902..2481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25333.6897.1

>prot_H-paniculata_contig25333.6897.1 ID=prot_H-paniculata_contig25333.6897.1|Name=mRNA_H-paniculata_contig25333.6897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
ARKELEEKWRKKEKEFAARWSARERDFDSRWAAREREFDKRRREDAKEFM
RGMRSMLFEAHEALIASNAWLVARLQAAEVSIERKK*
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mRNA from alignment at H-paniculata_contig25333:902..2481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25333.6897.1 ID=mRNA_H-paniculata_contig25333.6897.1|Name=mRNA_H-paniculata_contig25333.6897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-paniculata_contig25333:902..2481+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGGAAAGAGCTTGAAGAGAAGTGGCGGAAGAAGGAGAAAGAATTCGC
GGCAAGGTGGTCTGCCCGAGAGAGAGATTTCGACTCGAGGTGGGCAGCAC
GGGAGAGGGAGTTCGACAAGAGACGCCGCGAAGACGCCAAGGTACAAGAG
GAGAAAAAATTCGAGAAAAATCCTACTTGAATGTTATGTACTGCGAAGAG
GACTTTGGGAAACAACCAGCGTATTTATTAGAAATATATCAAGTGATGTC
AACCGTAAAGATGGCTACTTGGGAACTAAATTGTTGATCCGTACAGTACA
GTACAGTACAGTACAGTACAGTACAGTACAGTACAGTACAGTACACTACA
CTACACTACACTACAGTACAGCGGTCCGTGGTTGATACGAAGACTCCCAG
CAGCCAGCATTCAGCGTTCGGTCGGCGGGCATTTTTCGGCTGCTTTTCTC
GACCAGCAGAGTGGATGGGGGTGCGATCATTACGTGGTAAACAACGTCTT
GCGAGGATTTGTTAGGGTAGCGTTTAACCCAGCGTTGTCATCCTTGCGTG
TTGATGGATGGTGGTGGTGGTGGTGATAACGATGGTGTTGTTGTCGCTGT
GGCTATTAACTTAACGCTGCCAGCATGCAATCGCACACGAATCAAGGTGG
TCGGTTTCATATGCATTTATCGATGCGTGATAATCTGGAATAGTCTCCGC
GAGACAACGCGATGACTTTATCATGCAATTACTTTCATTTTAACGTTAAC
AGTGGAGCTTCGCTCAAAAAGAAATCCAGTTGCCCGTGAAGGCTAAGTAC
ACTGGACAAAAACACACCGTGCTGTTGATTTCCGTGTGGAGAGCAGCTCG
ATCGCCACTCAAGATCCGCCTGATCGCTGTACCGCCTTCTTCCATGGTTG
ATCTGAATTAGATTCGCGTTGACTCCAACAACCCCGAAAGCAAGTAAGCC
TCAAGTAGATACAACTATGTCTGTATTCGTTTTCTCTATCTCTCGTTTTT
CTACCTTTAAGTTTGCCTTTGTTTGCAGCACACACTGTTTTAACTTGAAT
GCAGCTTTAGAAACGGCTATACAAACGTTCAGAACCGACAAAAAAATGCC
GGTAACGGTGTGCTTTCCTTCTGAAGATACTTCTGAAGTCAAAGCTCCGG
AACCGAAGACAGAAATTCGTCTTCGATCCCTCGGTGTTGGGTGACGCTTT
CAACACGTGTTCAGGACGCAGGGTATTCGCAAACCAGCACATTCATCCAC
TACCGAGTAGTTTACCCGTCTTTTTGCACACGAGTTTAATCAAGATTTTT
CAATATTTTCGAAGTTTTCGTACCTCTTTTCCTTTTTTTGCGGCTTTTGC
TCCTCTGCAAAAAGCATACTCAGTCGGACATTAGCCCTTTCGTTGATTTG
TTTTTTACATAATTTTGTTTTTGCTATTTTATTCTTTATTTTGCTTTTTG
TTTTTCACAGGAGTTCATGCGCGGGATGCGGTCGATGCTGTTCGAGGCAC
ACGAAGCACTGATCGCATCGAATGCGTGGTTGGTTGCAAGGCTGCAGGCC
GCCGAGGTGAGCATCGAGAGAAAAAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig25333:902..2481+

>mRNA_H-paniculata_contig25333.6897.1 ID=mRNA_H-paniculata_contig25333.6897.1|Name=mRNA_H-paniculata_contig25333.6897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig25333:902..2481+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGGAAAGAGCTTGAAGAGAAGTGGCGGAAGAAGGAGAAAGAATTCGC
GGCAAGGTGGTCTGCCCGAGAGAGAGATTTCGACTCGAGGTGGGCAGCAC
GGGAGAGGGAGTTCGACAAGAGACGCCGCGAAGACGCCAAGGCAAGGAAA
GAGCTTGAAGAGAAGTGGCGGAAGAAGGAGAAAGAATTCGCGGCAAGGTG
GTCTGCCCGAGAGAGAGATTTCGACTCGAGGTGGGCAGCACGGGAGAGGG
AGTTCGACAAGAGACGCCGCGAAGACGCCAAGGAGTTCATGCGCGGGATG
CGGTCGATGCTGTTCGAGGCACACGAAGCACTGATCGCATCGAATGCGTG
GTTGGTTGCAAGGCTGCAGGCCGCCGAGGTGAGCATCGAGAGAAAAAAGT
AAGAGTTCATGCGCGGGATGCGGTCGATGCTGTTCGAGGCACACGAAGCA
CTGATCGCATCGAATGCGTGGTTGGTTGCAAGGCTGCAGGCCGCCGAGGT
GAGCATCGAGAGAAAAAAGTAA
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