prot_H-paniculata_contig25323.6893.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig25323.6893.1
Unique Name	prot_H-paniculata_contig25323.6893.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	111

Homology

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.050e-48
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YDKHV PNERVTDFRTFVSGVKA  L+ GV LRQCQ EVA IL  KVLVGHAL NDLKAL++SHP R TRDTA YRPYQKA GK GGKL  +SLK+L+ +HLDR IQ GQH
Sbjct:  306 YDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLKALMMSHPPRSTRDTATYRPYQKAHGKAGGKLRPRSLKLLSQEHLDRPIQTGQH 416

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: I2CRR5_NANGC (RNA exonuclease 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRR5_NANGC)

HSP 1 Score: 134 bits (336), Expect = 1.240e-37
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV P ER+TDFRT+VSGVKAK L++ + L++C  +VA ++ GK++VGHAL NDL+ L+L HP  M RDTA+YR Y ++ GK GGKL  + LK LALD L   IQEG+H
Sbjct:   17 YDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKH 127

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.930e-37
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YDKHV P ERVTDFRT VSG+++K LR  +P  QCQ EVA I + K+LVGHAL ND++AL+L+HP  M RDT KYRPY + R   G KL+ KSLK LAL+ L +TIQ G+H
Sbjct:   98 YDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQALMLTHPKGMIRDTTKYRPYMR-RKVNGTKLFPKSLKNLALEVLKKTIQTGEH 207

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A067BGR3_SAPPC (RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BGR3_SAPPC)

HSP 1 Score: 132 bits (333), Expect = 1.660e-36
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV P ERVTDFRT VSG++AK LR  +P  QCQ +VA I DGK++VGHA+ ND++AL+L+HP  + RDT KYRPY + R   G KLY K+LK LA + L +TIQ G+H
Sbjct:  105 YDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGLIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEH 214

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.710e-36
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV P ER+TDFRT+VSGVKAK L++ + L++C  +VA ++ GK++VGHAL NDL+ L+L HP  M RDTA+YR Y ++ GK GGKL  + LK LALD L   IQEG+H
Sbjct:  135 YDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQVLMLQHPVAMIRDTARYRAYMRSHGKEGGKLRPRRLKDLALDFLGMEIQEGKH 245

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: T0Q8K7_SAPDV (RNA exonuclease 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q8K7_SAPDV)

HSP 1 Score: 132 bits (331), Expect = 2.070e-35
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV P ERVTDFRT VSG++AK LR  +P  QCQ +VA I DGK++VGHA+ ND++AL+L+HP    RDT KYRPY + R   G KLY K+LK LA + L +TIQ G+H
Sbjct:  104 YDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQALMLTHPKGQIRDTTKYRPYMR-RKVNGTKLYPKALKHLAEEVLHKTIQTGEH 213

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A485LPN0_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPN0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.710e-34
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV P E+VTDFRT VSG+++K LR+ +P  +CQN+V  +L  K+LVGHA+ NDL+AL+L+HP  M RDT KYRPY + R   G KL  K+L+ LA + LD+TIQ G+H
Sbjct:  126 YDEHVKPLEKVTDFRTHVSGIRSKSLRNAIPFAKCQNDVGELLKDKILVGHAVRNDLQALMLTHPKPMLRDTTKYRPYMRRR-MNGTKLLPKALRHLAQEVLDKTIQTGEH 235

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.850e-33
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV P E+VTDFRT VSG+++K LR+ +P  +CQ +V  IL  K+LVGHAL NDL+AL+L+HP  M RDT KYRPY + R   G KL  K+L+ LA + LD+TIQ G+H
Sbjct:  109 YDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQALMLTHPKPMIRDTTKYRPYMR-RKVNGTKLLPKALRHLAQEVLDKTIQTGEH 218

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: F0Y7X0_AURAN (RNA exonuclease 4 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7X0_AURAN)

HSP 1 Score: 123 bits (308), Expect = 2.040e-33
Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDL--RSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV   ERVTDFRT  SGV+A+DL  R  VP  +CQ  VA +L+GKVLVGHALHNDLK LLL HP   TRDTA + P  +A G+  GK   + L+ L  +HL R IQEG+H
Sbjct:   38 YDRHVKVGERVTDFRTKYSGVRARDLKARDAVPFAECQRAVASLLEGKVLVGHALHNDLKVLLLPHPRTATRDTASWPPLMRANGR--GKRKPRKLRDLVSEHLGRAIQEGEH 148

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BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Match: A0A024UI79_9STRA (RNA exonuclease 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI79_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.410e-33
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 0

Query:    1 YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVGHALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALDHLDRTIQEGQH 111
            YD+HV P E+VTDFRT VSG+++K LR  +P  +CQ +VA IL  K+LVGHA+ NDL+AL+L+HP  M RDT KYRPY + R   G KL  K+L+ LAL+ L RTIQ G+H
Sbjct:  121 YDEHVKPLEKVTDFRTHVSGIRSKSLRKAIPFAKCQVDVAAILKDKILVGHAVRNDLQALMLTHPKPMLRDTTKYRPYMRRRV-NGTKLLPKALRHLALEVLGRTIQGGEH 230

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig25323.6893.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LAZ6_ECTSI	5.050e-48	75.68	RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus T...	[more]
I2CRR5_NANGC	1.240e-37	57.66	RNA exonuclease 4 (Fragment) n=1 Tax=Nannochlorops...	[more]
A0A1V9YXD8_9STRA	2.930e-37	61.26	RNA exonuclease 4 n=1 Tax=Thraustotheca clavata Ta...	[more]
A0A067BGR3_SAPPC	1.660e-36	58.56	RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia p...	[more]
W7U6T2_9STRA	2.710e-36	57.66	RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=42...	[more]
T0Q8K7_SAPDV	2.070e-35	58.56	RNA exonuclease 4 n=2 Tax=Saprolegnia TaxID=4769 R...	[more]
A0A485LPN0_9STRA	5.710e-34	55.86	RNA exonuclease 4 n=1 Tax=Aphanomyces stellatus Ta...	[more]
A0A6G0X6W8_9STRA	1.850e-33	56.76	RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches Ta...	[more]
F0Y7X0_AURAN	2.040e-33	57.52	RNA exonuclease 4 (Fragment) n=1 Tax=Aureococcus a...	[more]
A0A024UI79_9STRA	3.410e-33	57.66	RNA exonuclease 4 n=2 Tax=Aphanomyces invadans Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..111 e-value: 1.3E-25 score: 91.9
IPR034920	RNA exonuclease 4	PANTHER	PTHR12801:SF45	RNA EXONUCLEASE 4	coord: 1..111
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 1..111
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..109

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig25323	contig	H-paniculata_contig25323:1045..2180 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig25323.6893.1	mRNA_H-paniculata_contig25323.6893.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig25323 1045..2180 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig25323.6893.1 ID=prot_H-paniculata_contig25323.6893.1|Name=mRNA_H-paniculata_contig25323.6893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
YDKHVVPNERVTDFRTFVSGVKAKDLRSGVPLRQCQNEVAHILDGKVLVG
HALHNDLKALLLSHPARMTRDTAKYRPYQKARGKTGGKLYAKSLKILALD
HLDRTIQEGQH

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR034920	Rex4
IPR012337	RNaseH-like_sf