mRNA_H-paniculata_contig25313.6889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25313.6889.1
Unique NamemRNA_H-paniculata_contig25313.6889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25313.6889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25313contigH-paniculata_contig25313:3266..3511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size227
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929746.0560715-CDS-H-paniculata_contig25313:3265..34251622929746.0560715-CDS-H-paniculata_contig25313:3265..3425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25313 3266..3425 +
1691480993.2813818-CDS-H-paniculata_contig25313:3265..34251691480993.2813818-CDS-H-paniculata_contig25313:3265..3425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25313 3266..3425 +
1622929746.0793712-CDS-H-paniculata_contig25313:3446..35111622929746.0793712-CDS-H-paniculata_contig25313:3446..3511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25313 3447..3511 +
1691480993.2906022-CDS-H-paniculata_contig25313:3446..35111691480993.2906022-CDS-H-paniculata_contig25313:3446..3511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25313 3447..3511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25313.6889.1prot_H-paniculata_contig25313.6889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25313 3266..3511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25313.6889.1

>prot_H-paniculata_contig25313.6889.1 ID=prot_H-paniculata_contig25313.6889.1|Name=mRNA_H-paniculata_contig25313.6889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
RRQGPVHRINTSVITQKNVSNIKELSSAGSFSRWTWPSLYCCILPHPERE
PCKYIYIYLVQDLRRFYSSYSKEW*
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mRNA from alignment at H-paniculata_contig25313:3266..3511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25313.6889.1 ID=mRNA_H-paniculata_contig25313.6889.1|Name=mRNA_H-paniculata_contig25313.6889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig25313:3266..3511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGACAGGGCCCGGTTCACCGCATAAACACGTCGGTTATAACGCAAAA
GAATGTGTCCAACATCAAAGAACTATCTTCTGCGGGTTCTTTTTCCCGTT
GGACTTGGCCATCCCTTTACTGCTGCATTTTACCACATCCCGAACGGGAA
CCTTGTAAATGTAGTATATATCTATATATAGATATATATATATATCTTGT
CCAGGATCTACGTAGATTTTACTCGTCCTATTCAAAAGAGTGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25313:3266..3511+

>mRNA_H-paniculata_contig25313.6889.1 ID=mRNA_H-paniculata_contig25313.6889.1|Name=mRNA_H-paniculata_contig25313.6889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig25313:3266..3511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGACAGGGCCCGGTTCACCGCATAAACACGTCGGTTATAACGCAAAA
GAATGTGTCCAACATCAAAGAACTATCTTCTGCGGGTTCTTTTTCCCGTT
GGACTTGGCCATCCCTTTACTGCTGCATTTTACCACATCCCGAACGGGAA
CCTTGTAAATCGGCGACAGGGCCCGGTTCACCGCATAAACACGTCGGTTA
TAACGCAAAAGAATGTGTCCAACATCAAAGAACTATCTTCTGCGGGTTCT
TTTTCCCGTTGGACTTGGCCATCCCTTTACTGCTGCATTTTACCACATCC
CGAACGGGAACCTTGTAAATATATATATATATATCTTGTCCAGGATCTAC
GTAGATTTTACTCGTCCTATTCAAAAGAGTGGTAGATATATATATATATC
TTGTCCAGGATCTACGTAGATTTTACTCGTCCTATTCAAAAGAGTGGTAG
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