mRNA_H-paniculata_contig25271.6882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25271.6882.1
Unique NamemRNA_H-paniculata_contig25271.6882.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: A0A6H5L0T1_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T1_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 3.740e-42
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLSAP 228
            FMMEKGL VSYTGGLSSYALTLMVARYLQEQ+ QMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPL AP
Sbjct:   40 FMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAP 115
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 7.970e-39
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLSAP 228
            FMMEKGL VSYTGGLSSYALTLMVARYLQEQ+ QMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPL AP
Sbjct: 1827 FMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPAP 1902
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: A0A835ZHQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.320e-27
Identity = 57/84 (67.86%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSA-------PLSAPL 231
            F+ E+GLC SYTGGLSSYAL L+VARYLQEQS  +D+GSLL GFLDF+GN FDPR TGISV R  YFSR A       PL+AP+
Sbjct:  169 FLKERGLCESYTGGLSSYALVLLVARYLQEQSTHLDAGSLLRGFLDFFGNTFDPRTTGISVTRRCYFSRLAQTPTTWPPLAAPV 252
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: W7U5Q9_9STRA (Nucleotidyl transferase domain protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5Q9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.620e-24
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLS 222
            FM E+GL  SY+GGLSSY L LMVARYLQEQS  MD+G+LLLGFLDFY NHFDPR  GIS  +  YFSRS+  S
Sbjct: 1185 FMKERGLMESYSGGLSSYGLVLMVARYLQEQSNAMDTGALLLGFLDFYSNHFDPRSMGISTNQRCYFSRSSQQS 1258
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: A0A1Z5KF72_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF72_FISSO)

HSP 1 Score: 100 bits (250), Expect = 4.960e-23
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLSAPLGAPP 243
            F+  +GL  +YTGGLS+Y L LMVARYLQEQ    D GSLL+GFLDFYGN+FDPR TGISV   +YFSR   LSA +G  P
Sbjct: 1270 FLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSTGISVKNRQYFSR---LSAVMGPAP 1347
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: A0A1Z5KCZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCZ8_FISSO)

HSP 1 Score: 100 bits (250), Expect = 4.960e-23
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLSAPLGAPP 243
            F+  +GL  +YTGGLS+Y L LMVARYLQEQ    D GSLL+GFLDFYGN+FDPR  GISV   +YFSR   LSA +GA P
Sbjct: 1271 FLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSIGISVKNRQYFSR---LSAAMGAAP 1348
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: A0A7R9W717_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W717_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.970e-23
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQM-DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR 207
            F++++GL  +YTGGLSSY L LMV RYLQEQ     D G+LL+GFLDFYGN F+PR TGISV R +YFSR
Sbjct:   16 FLLDRGLLTAYTGGLSSYCLFLMVTRYLQEQPLSWNDCGTLLMGFLDFYGNSFEPRSTGISVKRRQYFSR 85
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: A0A7S3JPY7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPY7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.970e-22
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   10 EKGLCVSYTGGLSSYALTLMVARYLQEQ-SCQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLSAP 228
             +GLC SYTGGLSSYALTL+VARYL EQ S   D G+LLLGFLDFY + FDPR TGISVGR  +F+R+   +AP
Sbjct: 1133 NRGLCASYTGGLSSYALTLLVARYLHEQPSRPTDPGALLLGFLDFYAHRFDPRKTGISVGRRCFFARAELGTAP 1206
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: A0A7S1U3N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.430e-21
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQM--DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR 207
            F  EKGL  SYTGG+SSYALTL+VARYLQE       D GSLLLGFLDFYG+ FDPR TG+SV R  YFSR
Sbjct:  247 FCKEKGLSASYTGGISSYALTLLVARYLQETLGHSGGDLGSLLLGFLDFYGSKFDPRTTGVSVRRGVYFSR 317
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BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Match: B7G2A8_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2A8_PHATC)

HSP 1 Score: 96.7 bits (239), Expect = 1.520e-21
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 FMMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQM-DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLSAPLGAP 240
            F++++GL  +YTGGLSSY L LMVARYLQEQ     D GSLL+GFLDFYGN FDPR TGISV   +YF R    SA + +P
Sbjct: 1280 FLLDRGLLTAYTGGLSSYCLFLMVARYLQEQQTSWGDCGSLLMGFLDFYGNCFDPRTTGISVRHRQYFPRPNYSSARMHSP 1360
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25271.6882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0T1_9PHAE3.740e-4294.74PAP-associated domain-containing protein n=1 Tax=E... [more]
D7FHG7_ECTSI7.970e-3994.74LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZHQ3_9STRA3.320e-2767.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U5Q9_9STRA1.620e-2470.27Nucleotidyl transferase domain protein n=4 Tax=Mon... [more]
A0A1Z5KF72_FISSO4.960e-2364.20Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KCZ8_FISSO4.960e-2364.20Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9W717_9STRA7.970e-2365.71Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3JPY7_9STRA5.970e-2267.57Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S1U3N8_9STRA1.430e-2170.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B7G2A8_PHATC1.520e-2161.73Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25271contigH-paniculata_contig25271:1640..2743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.1e-31
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Exons2
Model size243
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25271.6882.1prot_H-paniculata_contig25271.6882.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25271 1640..2740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.5734627-CDS-H-paniculata_contig25271:1639..18051622929744.5734627-CDS-H-paniculata_contig25271:1639..1805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25271 1640..1805 -
1691480992.482126-CDS-H-paniculata_contig25271:1639..18051691480992.482126-CDS-H-paniculata_contig25271:1639..1805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25271 1640..1805 -
1622929744.5930371-CDS-H-paniculata_contig25271:2666..27401622929744.5930371-CDS-H-paniculata_contig25271:2666..2740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25271 2667..2740 -
1691480992.4929473-CDS-H-paniculata_contig25271:2666..27401691480992.4929473-CDS-H-paniculata_contig25271:2666..2740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25271 2667..2740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929744.6126525-UTR-H-paniculata_contig25271:2740..27431622929744.6126525-UTR-H-paniculata_contig25271:2740..2743Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25271 2741..2743 -
1691480992.5013838-UTR-H-paniculata_contig25271:2740..27431691480992.5013838-UTR-H-paniculata_contig25271:2740..2743Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25271 2741..2743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25271.6882.1

>prot_H-paniculata_contig25271.6882.1 ID=prot_H-paniculata_contig25271.6882.1|Name=mRNA_H-paniculata_contig25271.6882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MMEKGLCVSYTGGLSSYALTLMVARYLQEQSCQMDSGSLLLGFLDFYGNH
FDPRLTGISVGRSRYFSRSAPLSAPLGAPP
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mRNA from alignment at H-paniculata_contig25271:1640..2743-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25271.6882.1 ID=mRNA_H-paniculata_contig25271.6882.1|Name=mRNA_H-paniculata_contig25271.6882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig25271:1640..2743- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCATGATGGAAAAGGGGCTGTGTGTGAGCTACACGGGGGGCTTGTCCTC
CTACGCGCTCACGTTGATGGTGGCCAGGTAAGGAAATTTGGAATCGGACA
GGAATTGGACAGGTCGAGCGTGAGCTAGAGGAATCGACTGATGAGTTGTT
AGGATGATGCCTGATGGTATGTGAAATGTTGCTACCCGCTGTTGCTTGGG
AGGAGCGGATGGGTTAACCGCACTTGGTCCTTTCTTTTGAGGAGAAGACA
TGTTTGCGACTTATTCGGTGGATTTGGTGGATTTGATGGGCGTTGATCAA
GAGTTCGACCCCCCTCCCCCCCCCTCCCGCGTCCCACCCTAATTTTTCTG
GAAAAAGTTATCACTCAGTAGTATGGATTATTGCCTAAGCGTGCCTTCCT
TTTTGATTGATCAATCGATGGTTACGGGCACGTTTTGTAGTTATTTTATT
GTATATGTTTTAAACCGTATGCCCCGTGTTGTTGGCCATGCTTTCTGTCT
GTCCTGTGTATTTATGTTCGTCCTTGGCATGGGTACTAGTATGGTAGTAT
AGATGCTGCCGTCGCTGTTGTTGTGTGGTTAATTTTGCAGGGTTCATGCT
CCTGCTTCAAGGCCTCTCGCTACTCGGTCCTCTTGTACGTCTCCGGTTTT
TTTGAGCCGTCACATTCTGCAGATTCAGTCTTGGAACAGGAAGATGAAAG
TTGTGAGCGACAGCCCCCCCCCCCCCCCCCCCCCCGCCTCACCTCTTTTG
GTCATTTTCCAATTTTGATGATGAGTATACACAAGTGAAGATTGATCAGC
TTCATAACCTCAACATGAGTACAACGGATAAGAACATCCCGGTGGGTGCA
AGGTGAGGGTTATTTTAGAGGAGTGGGCGTCATCCTTCCCCTCCTCCGCC
GCTGCCCTGTCTCTGCCGTTCCCTCCTGGTTAAGCCAGGTATCTCCAAGA
ACAAAGCTGTCAGATGGACTCTGGTTCCCTATTGCTGGGCTTCTTAGACT
TCTATGGCAATCACTTCGACCCTCGTCTAACCGGAATAAGCGTCGGGCGA
AGCCGATACTTCTCCAGGAGCGCGCCACTATCGGCTCCGCTGGGTGCACC
CCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig25271:1640..2743-

>mRNA_H-paniculata_contig25271.6882.1 ID=mRNA_H-paniculata_contig25271.6882.1|Name=mRNA_H-paniculata_contig25271.6882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig25271:1640..2743- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGAAAAGGGGCTGTGTGTGAGCTACACGGGGGGCTTGTCCTCCTA
CGCGCTCACGTTGATGGTGGCCAGATGATGGAAAAGGGGCTGTGTGTGAG
CTACACGGGGGGCTTGTCCTCCTACGCGCTCACGTTGATGGTGGCCAGGT
ATCTCCAAGAACAAAGCTGTCAGATGGACTCTGGTTCCCTATTGCTGGGC
TTCTTAGACTTCTATGGCAATCACTTCGACCCTCGTCTAACCGGAATAAG
CGTCGGGCGAAGCCGATACTTCTCCAGGAGCGCGCCACTATCGGCTCCGC
TGGGTGCACCCCCGGTATCTCCAAGAACAAAGCTGTCAGATGGACTCTGG
TTCCCTATTGCTGGGCTTCTTAGACTTCTATGGCAATCACTTCGACCCTC
GTCTAACCGGAATAAGCGTCGGGCGAAGCCGATACTTCTCCAGGAGCGCG
CCACTATCGGCTCCGCTGGGTGCACCCCCG
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