mRNA_H-paniculata_contig25229.6872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25229.6872.1
Unique NamemRNA_H-paniculata_contig25229.6872.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25229.6872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25229contigH-paniculata_contig25229:2020..2694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size675
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25229.6872.1prot_H-paniculata_contig25229.6872.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25229 2096..2563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.5059488-UTR-H-paniculata_contig25229:2019..20951622929743.5059488-UTR-H-paniculata_contig25229:2019..2095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25229 2020..2095 +
1691480992.0625126-UTR-H-paniculata_contig25229:2019..20951691480992.0625126-UTR-H-paniculata_contig25229:2019..2095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25229 2020..2095 +
1622929743.540715-UTR-H-paniculata_contig25229:2563..26941622929743.540715-UTR-H-paniculata_contig25229:2563..2694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25229 2564..2694 +
1691480992.080124-UTR-H-paniculata_contig25229:2563..26941691480992.080124-UTR-H-paniculata_contig25229:2563..2694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25229 2564..2694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.5249841-CDS-H-paniculata_contig25229:2095..25631622929743.5249841-CDS-H-paniculata_contig25229:2095..2563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25229 2096..2563 +
1691480992.0720057-CDS-H-paniculata_contig25229:2095..25631691480992.0720057-CDS-H-paniculata_contig25229:2095..2563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25229 2096..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25229.6872.1

>prot_H-paniculata_contig25229.6872.1 ID=prot_H-paniculata_contig25229.6872.1|Name=mRNA_H-paniculata_contig25229.6872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MPDARCHDDVYALSLQFGLSMAVLAILLLKPARQSRRPVSDEAPIFPISM
TSVSEAVKRMANISIVCLVLLIYHHGIVEAIRSTFLFGLITVVMSMTVLQ
LFIQVFIYTMSLVGIRDGGFGQQLITSMEMMDIIDDGIQVCGIILARAVR
FLEEQ*
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mRNA from alignment at H-paniculata_contig25229:2020..2694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25229.6872.1 ID=mRNA_H-paniculata_contig25229.6872.1|Name=mRNA_H-paniculata_contig25229.6872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=675bp|location=Sequence derived from alignment at H-paniculata_contig25229:2020..2694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATTCAGGTGATCGATTGAAGCTTTGGTATCTCCGAGACCCCGCGTATT
CCCGACAAGAGTCTTCCCATAGAGTGATGCCAGACGCAAGGTGCCATGAC
GATGTGTATGCACTTAGCCTACAGTTTGGACTGTCGATGGCGGTCCTGGC
AATTCTTCTTTTGAAGCCCGCTCGACAGTCACGGCGGCCGGTCAGCGATG
AAGCGCCAATCTTCCCAATATCGATGACTTCTGTATCAGAGGCTGTCAAA
CGCATGGCAAATATCTCCATCGTTTGCCTCGTTTTACTAATCTACCATCA
TGGGATTGTTGAAGCCATCCGCTCGACATTTTTGTTTGGGTTGATAACCG
TGGTGATGAGCATGACCGTGCTGCAGCTTTTTATCCAAGTTTTTATCTAC
ACTATGTCACTCGTGGGTATCAGGGATGGGGGATTTGGGCAGCAGCTCAT
TACGTCTATGGAAATGATGGATATCATAGATGACGGTATTCAGGTTTGCG
GCATTATCTTGGCTCGAGCTGTTCGTTTCTTGGAAGAGCAGTGATAATCA
ACGGGGGAGATACCTCATCGCCCCCTCGCCGCCCCTGGCTTGTTGAGTGT
TGTATTTGCTGGCGTACAACGTTAGGCACGGTGTGAACGTCTTCCTTCTA
CTCATCGTACGGGTGTCTGTTGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig25229:2020..2694+

>mRNA_H-paniculata_contig25229.6872.1 ID=mRNA_H-paniculata_contig25229.6872.1|Name=mRNA_H-paniculata_contig25229.6872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig25229:2020..2694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGACGCAAGGTGCCATGACGATGTGTATGCACTTAGCCTACAGTT
TGGACTGTCGATGGCGGTCCTGGCAATTCTTCTTTTGAAGCCCGCTCGAC
AGTCACGGCGGCCGGTCAGCGATGAAGCGCCAATCTTCCCAATATCGATG
ACTTCTGTATCAGAGGCTGTCAAACGCATGGCAAATATCTCCATCGTTTG
CCTCGTTTTACTAATCTACCATCATGGGATTGTTGAAGCCATCCGCTCGA
CATTTTTGTTTGGGTTGATAACCGTGGTGATGAGCATGACCGTGCTGCAG
CTTTTTATCCAAGTTTTTATCTACACTATGTCACTCGTGGGTATCAGGGA
TGGGGGATTTGGGCAGCAGCTCATTACGTCTATGGAAATGATGGATATCA
TAGATGACGGTATTCAGGTTTGCGGCATTATCTTGGCTCGAGCTGTTCGT
TTCTTGGAAGAGCAGTGAATGCCAGACGCAAGGTGCCATGACGATGTGTA
TGCACTTAGCCTACAGTTTGGACTGTCGATGGCGGTCCTGGCAATTCTTC
TTTTGAAGCCCGCTCGACAGTCACGGCGGCCGGTCAGCGATGAAGCGCCA
ATCTTCCCAATATCGATGACTTCTGTATCAGAGGCTGTCAAACGCATGGC
AAATATCTCCATCGTTTGCCTCGTTTTACTAATCTACCATCATGGGATTG
TTGAAGCCATCCGCTCGACATTTTTGTTTGGGTTGATAACCGTGGTGATG
AGCATGACCGTGCTGCAGCTTTTTATCCAAGTTTTTATCTACACTATGTC
ACTCGTGGGTATCAGGGATGGGGGATTTGGGCAGCAGCTCATTACGTCTA
TGGAAATGATGGATATCATAGATGACGGTATTCAGGTTTGCGGCATTATC
TTGGCTCGAGCTGTTCGTTTCTTGGAAGAGCAGTGA
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