mRNA_H-paniculata_contig1106.688.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1106.688.1
Unique NamemRNA_H-paniculata_contig1106.688.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1106.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1106contigH-paniculata_contig1106:17812..21695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1472
Cds size1122
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1106.688.1prot_H-paniculata_contig1106.688.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1106 18073..20626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928813.3443742-UTR-H-paniculata_contig1106:17811..180721622928813.3443742-UTR-H-paniculata_contig1106:17811..18072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1106 17812..18072 -
1691480629.903336-UTR-H-paniculata_contig1106:17811..180721691480629.903336-UTR-H-paniculata_contig1106:17811..18072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1106 17812..18072 -
1622928813.3980727-UTR-H-paniculata_contig1106:20626..206631622928813.3980727-UTR-H-paniculata_contig1106:20626..20663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1106 20627..20663 -
1691480629.931425-UTR-H-paniculata_contig1106:20626..206631691480629.931425-UTR-H-paniculata_contig1106:20626..20663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1106 20627..20663 -
1622928813.4091754-UTR-H-paniculata_contig1106:21643..216951622928813.4091754-UTR-H-paniculata_contig1106:21643..21695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1106 21644..21695 -
1691480629.9421065-UTR-H-paniculata_contig1106:21643..216951691480629.9421065-UTR-H-paniculata_contig1106:21643..21695Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1106 21644..21695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928813.3597033-CDS-H-paniculata_contig1106:18072..183541622928813.3597033-CDS-H-paniculata_contig1106:18072..18354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1106 18073..18354 -
1691480629.9119167-CDS-H-paniculata_contig1106:18072..183541691480629.9119167-CDS-H-paniculata_contig1106:18072..18354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1106 18073..18354 -
1622928813.3789668-CDS-H-paniculata_contig1106:19786..206261622928813.3789668-CDS-H-paniculata_contig1106:19786..20626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1106 19787..20626 -
1691480629.922576-CDS-H-paniculata_contig1106:19786..206261691480629.922576-CDS-H-paniculata_contig1106:19786..20626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1106 19787..20626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1106.688.1

>prot_H-paniculata_contig1106.688.1 ID=prot_H-paniculata_contig1106.688.1|Name=mRNA_H-paniculata_contig1106.688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp
MKTPFFPNTDISSMPQAMEALRIVVVSGFPRRNELESTCLTLANACREGA
RCSLLMAALSPPSLLRSLMPEFGQGGSGIGGEGRRSTTPPVASRISRHGM
VRRLRIEGNFDLRLVHWPGGLTEVVFAGEFNQGLRGVRWPSGVVKLESVG
VFDMPLHHPVTSLLPYEESVLPPNLKELVLGGNFNRNIDKVYFPPTLESI
KLGSAEDGFLDSDDEDGEAAAVAGESVGSRNDDDDDYPDEPSFNRPILKA
TWPTNLKRLEFGSRFNKPVEGAKFPDSLEEISFGTRFDQPIVGVKWPAEL
RRLRLGEDFYQDLKEVFWPGKLEEIIFWGDLDYPILSVEDVMDVVWPDSM
RKLIFSWAGRSIVHTCLVGDSGR*
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mRNA from alignment at H-paniculata_contig1106:17812..21695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1106.688.1 ID=mRNA_H-paniculata_contig1106.688.1|Name=mRNA_H-paniculata_contig1106.688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3884bp|location=Sequence derived from alignment at H-paniculata_contig1106:17812..21695- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAATTAGCGACATCACCACACAGCGAGCTCTATCGCAATGTATACAT
AGGTGAGAGTTGGCCATGTTGCATATCCTGTTTTATGTTATCTGTGTATT
TGTATTTGGGCCATTTCTTCAGCAGCAGATTCGCTTCTCGCACGTACTGT
CTCTTCTCTGTCAGTTTGGTGTTGTTGTTCTTTCTGTTTGTGACTTATTG
TTTATCTGCCTGAGAGCACCAATGGGACGTCGAAGACCGACACAATAATA
GCGAGTTGAGGTGAAGTTTTTTCACGGCGCAGATATTAGATATCAGATAC
TGACAAAACTCGATCGCCCAGATGGTGGGGATGATACATGTGGCTTTTGG
GCTCAGTCACCCCCATCATCCGATGGGGCATGGTGTATGTACTATACTAA
AATTCACCATATGCCGTTGGCGCTTGCTAGTCCAGCCTTGATGCGTTCAC
CTCTCACTGTGCTTGTCAAGTCCCTGGCTCGATAGCAGCGAGTATGGACG
CTCTATAGCACGGTACGGTCAGTGTAGTCAGTACGGATGATAACTGGATC
TCCCTTTTTTGCGCCTGTATAATATTATGATAAAACTGTCTGAATAAGTC
TGAATGCAATACGGGGCATGGCCCAAATGGGACGCGTTGCCCGCTACCCA
AGATTCTTGGATTCATGACTCATCATTTATCTACGGAAAATATCCCAAAG
TGTAGGAAATAAGATATATATCGTACCTTCTGCTGGAGAATCACGGGTGT
GTCAGCGTCTCTTGACTGCATTAGCCACACAGCATCCACCTTCGATGGAC
CCACTTGATGCGTACTCGAGATGTCGACCCAAATTTTCGTCCAATCAAGC
TAACAGGGGTTGCAATAAATAACGAATAATATACTTATCGACTAATGGTG
AAAGTGCGGCAGCTTTTACCGAGCAGTCAACGATACAAGGCTCGTCAGAT
ATCGCATGCTCTTTCAAGACCCGATATGCCGCAGTCCAGAACTGTGAAAA
GCCCGACGTTTCTCCCCTCCCCACCACCCCAGCGCCGCAAGCTCCGCTCC
AGGTCCAGCCTAATCACAAATGAAAACGCCCTTCTTCCCAAACACCGACA
TCAGTAGTATGCCACAGGCAATGGAGGCCCTGAGGATCGTCGTTGTGTCT
GGATTTCCCCGACGCAACGAGCTCGAGTCTACGTGCCTAACCCTGGCCAA
CGCATGTCGCGAGGGCGCACGTTGCTCGCTTTTGATGGCAGCTCTTTCCC
CGCCAAGCCTATTGCGCTCTCTTATGCCCGAATTTGGGCAGGGCGGCAGC
GGTATCGGCGGTGAGGGTAGGAGGTCTACTACTCCTCCGGTCGCTTCGCG
GATTTCACGGCATGGCATGGTCCGGCGCCTGCGTATAGAGGGAAATTTTG
ATCTTCGCCTGGTGCACTGGCCAGGAGGTCTCACAGAAGTCGTATTTGCG
GGCGAGTTCAATCAGGGTTTGCGGGGTGTGCGGTGGCCGAGTGGAGTTGT
CAAGCTGGAAAGCGTGGGGGTGTTCGATATGCCTCTTCACCACCCCGTTA
CAAGCTTGCTGCCGTATGAGGAGAGTGTTCTTCCACCCAACCTGAAAGAG
CTCGTCCTGGGCGGAAACTTCAACCGGAACATCGACAAAGTCTATTTCCC
GCCGACACTGGAATCGATAAAGCTAGGAAGCGCAGAAGATGGTTTTCTGG
ATTCAGACGATGAAGATGGCGAAGCTGCTGCTGTTGCTGGTGAATCCGTC
GGCTCTAGAAATGATGATGATGATGACTATCCTGACGAGCCGAGCTTCAA
CCGTCCCATCTTAAAGGCGACGTGGCCCACAAATCTTAAGAGACTCGAAT
TTGGTAGCCGCTTCAACAAGCCGGTGGAAGGGGCCAAGTTTCCGGATAGC
CTAGAGGAGGTGAGTTGATTCTTTGTCATCAAACGTAAATAATCAGACAT
ATTTTTGCCATGAATATTTAGGGTTTTTTGCCTGTCCGGTGGCCAGACAG
GTAGTCCTCGACGCAGGAAGCGACTTTTCGGGGTAATTTGTTGCGTTTCG
GAAAAAGAAAAAGTCCGTTGATACATTTTTTTACTATTGGAACATATATA
TGTTCTGCTTGGGTAAGTTTTTGTTACTGTTTAGGGGTATTGCGGTTGCG
GTTCGGGACATGAGTTTGTGGTGAGGCAACTAAAGCCGGTGGCAGCCACT
GGGTGCCACTGGTCTGGCCAACCAGCGACCGTCCAAATTACCACCGGACC
AACCAGCTGCCGAAGTGAGAACTGACCTGTTGATGGCGGCTGACCGTGGA
TAGGTTTGCCGGACAGGTTCAACTTCAGGGCATTGTGTAGAGCCTTGCAA
ATATTCTCGTAGAATCGGCCGACAATAGTCCTACAGGTAGGTTTCGCGAT
CAGGTCTTCAGTATCCGAAAGCAGGAAATTGTACGGACGCGTTGAAATCG
TACAGCTAAGTACGTATTGAACCAACGTGAATCCGAAATTGTTGCTTGTT
TTCGCAAGCCGTTGGGCACATAGCTTGGGGGAAGGTACGTACTTCTTGCA
ATGTACAATCATGCCTCTCGTGTGAGGAGCTGGTATAATACGTGCACCAA
GAGGAAACAGATTAATTGCTTCATCCAGACATGTCCTAATTATACTGTGC
TGTTATGTAGTGTACTATACGTACGTATAGTTGGCGTAAGTCGCAGCACC
GTGGTAACGTGAGAACGTGAGAGCAACCCTTGAGGCATGGATAATTGAAG
AGTTCCATCGGCTGGCAAAACACCGTTTTGCTCGTAATTTGGCTGGGACC
GGGCCTCCCCTTGACTGTGATAACGTGCCGTCTTGTCTTTTCGGCGTGGA
GATGCCATCCTGCATAGGTGTATTGGAACACCATCGACTGCTGTTCATGG
TGTTCAACTGCTGTTCACGGTTTGCAACTATATAATCTAACGGCTACACT
ACACAAATTGATTTTTAGAAATATTTGTTGAGAAAAATCAGACTCGATTT
TTCGGGTCCTTAAAGGCTTTGCTTCAGAAACTCTGCTTGCTCCCTTGGTG
CCCAGACTTCTTCCTATGTACCGGTAAGGAAAGTATTACTCGAAAAAAAG
AGGTCTTTGTCTCGGGTCAGGCCGTATATCTAAGTCGTGAGGCTCATGAT
GACATCGTGTAAGAAGTGTCTGATCGTGTTGAGCCCCACGACTTATAAAT
TATTGATCGCATGCTGGCGCTAGCTGGTCCCAGGGTTCGATTTCAGTCAT
CTGTAATTTGCAAATAGGCGTCTCTTACATCATGTCATTATTTACTACTG
GCACCCACTTTTTCCCTCCATCTGCTCTCATTCCCCGTCAGATCTCCTTT
GGCACTAGGTTCGACCAACCCATTGTTGGAGTCAAATGGCCTGCCGAGCT
CCGACGTCTACGTCTTGGCGAAGACTTTTATCAGGATCTCAAAGAAGTAT
TCTGGCCTGGAAAGTTAGAGGAGATAATCTTCTGGGGTGATCTGGACTAT
CCCATCCTGAGTGTTGAGGACGTGATGGACGTTGTTTGGCCGGACAGTAT
GCGAAAGCTCATTTTTAGTTGGGCGGGCCGGTCGATTGTACACACATGTT
TGGTTGGGGACAGTGGTCGTTGACACAGATTCGCTACTCAAGACGTCGAA
GCATTGTAAGCGCTGAGTTGTTTTACAAAACATGGAGTAATGGAACAGGT
CCATGTAGCGTCCTGTATGTGCTATGTATGGTTTCCTCCATTGCAGCTAC
TGGCACATATTAATATTAATAGCATTACAGTTTGCTGCTGTATGAGGAAA
TAAACCGATTGATTCACCTCCCTATAGGCCGTCATTTCGCACAGAGTGGT
ATTTGTCAGCTGTGACAAATCAGGCATTGCGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1106:17812..21695-

>mRNA_H-paniculata_contig1106.688.1 ID=mRNA_H-paniculata_contig1106.688.1|Name=mRNA_H-paniculata_contig1106.688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2244bp|location=Sequence derived from alignment at H-paniculata_contig1106:17812..21695- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACGCCCTTCTTCCCAAACACCGACATCAGTAGTATGCCACAGGC
AATGGAGGCCCTGAGGATCGTCGTTGTGTCTGGATTTCCCCGACGCAACG
AGCTCGAGTCTACGTGCCTAACCCTGGCCAACGCATGTCGCGAGGGCGCA
CGTTGCTCGCTTTTGATGGCAGCTCTTTCCCCGCCAAGCCTATTGCGCTC
TCTTATGCCCGAATTTGGGCAGGGCGGCAGCGGTATCGGCGGTGAGGGTA
GGAGGTCTACTACTCCTCCGGTCGCTTCGCGGATTTCACGGCATGGCATG
GTCCGGCGCCTGCGTATAGAGGGAAATTTTGATCTTCGCCTGGTGCACTG
GCCAGGAGGTCTCACAGAAGTCGTATTTGCGGGCGAGTTCAATCAGGGTT
TGCGGGGTGTGCGGTGGCCGAGTGGAGTTGTCAAGCTGGAAAGCGTGGGG
GTGTTCGATATGCCTCTTCACCACCCCGTTACAAGCTTGCTGCCGTATGA
GGAGAGTGTTCTTCCACCCAACCTGAAAGAGCTCGTCCTGGGCGGAAACT
TCAACCGGAACATCGACAAAGTCTATTTCCCGCCGACACTGGAATCGATA
AAGCTAGGAAGCGCAGAAGATGGTTTTCTGGATTCAGACGATGAAGATGG
CGAAGCTGCTGCTGTTGCTGGTGAATCCGTCGGCTCTAGAAATGATGATG
ATGATGACTATCCTGACGAGCCGAGCTTCAACCGTCCCATCTTAAAGGCG
ACGTGGCCCACAAATCTTAAGAGACTCGAATTTGGTAGCCGCTTCAACAA
GCCGGTGGAAGGGGCCAAGTTTCCGGATAGCCTAGAGGAGATGAAAACGC
CCTTCTTCCCAAACACCGACATCAGTAGTATGCCACAGGCAATGGAGGCC
CTGAGGATCGTCGTTGTGTCTGGATTTCCCCGACGCAACGAGCTCGAGTC
TACGTGCCTAACCCTGGCCAACGCATGTCGCGAGGGCGCACGTTGCTCGC
TTTTGATGGCAGCTCTTTCCCCGCCAAGCCTATTGCGCTCTCTTATGCCC
GAATTTGGGCAGGGCGGCAGCGGTATCGGCGGTGAGGGTAGGAGGTCTAC
TACTCCTCCGGTCGCTTCGCGGATTTCACGGCATGGCATGGTCCGGCGCC
TGCGTATAGAGGGAAATTTTGATCTTCGCCTGGTGCACTGGCCAGGAGGT
CTCACAGAAGTCGTATTTGCGGGCGAGTTCAATCAGGGTTTGCGGGGTGT
GCGGTGGCCGAGTGGAGTTGTCAAGCTGGAAAGCGTGGGGGTGTTCGATA
TGCCTCTTCACCACCCCGTTACAAGCTTGCTGCCGTATGAGGAGAGTGTT
CTTCCACCCAACCTGAAAGAGCTCGTCCTGGGCGGAAACTTCAACCGGAA
CATCGACAAAGTCTATTTCCCGCCGACACTGGAATCGATAAAGCTAGGAA
GCGCAGAAGATGGTTTTCTGGATTCAGACGATGAAGATGGCGAAGCTGCT
GCTGTTGCTGGTGAATCCGTCGGCTCTAGAAATGATGATGATGATGACTA
TCCTGACGAGCCGAGCTTCAACCGTCCCATCTTAAAGGCGACGTGGCCCA
CAAATCTTAAGAGACTCGAATTTGGTAGCCGCTTCAACAAGCCGGTGGAA
GGGGCCAAGTTTCCGGATAGCCTAGAGGAGATCTCCTTTGGCACTAGGTT
CGACCAACCCATTGTTGGAGTCAAATGGCCTGCCGAGCTCCGACGTCTAC
GTCTTGGCGAAGACTTTTATCAGGATCTCAAAGAAGTATTCTGGCCTGGA
AAGTTAGAGGAGATAATCTTCTGGGGTGATCTGGACTATCCCATCCTGAG
TGTTGAGGACGTGATGGACGTTGTTTGGCCGGACAGTATGCGAAAGCTCA
TTTTTAGTTGGGCGGGCCGGTCGATTGTACACACATGTTTGGTTGGGGAC
AGTGGTCGTTGAATCTCCTTTGGCACTAGGTTCGACCAACCCATTGTTGG
AGTCAAATGGCCTGCCGAGCTCCGACGTCTACGTCTTGGCGAAGACTTTT
ATCAGGATCTCAAAGAAGTATTCTGGCCTGGAAAGTTAGAGGAGATAATC
TTCTGGGGTGATCTGGACTATCCCATCCTGAGTGTTGAGGACGTGATGGA
CGTTGTTTGGCCGGACAGTATGCGAAAGCTCATTTTTAGTTGGGCGGGCC
GGTCGATTGTACACACATGTTTGGTTGGGGACAGTGGTCGTTGA
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