mRNA_H-paniculata_contig25225.6870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25225.6870.1
Unique NamemRNA_H-paniculata_contig25225.6870.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: D8LQB3_ECTSI (Inositol-3-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQB3_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.570e-55
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEGGKWEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHRL 285
            MHNTCEDSLLASPLIFDLVI++ELCERI+VKKEGGKWEGFH VLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRAC+GLAPENHMLLEHRL
Sbjct:  414 MHNTCEDSLLASPLIFDLVIMAELCERIQVKKEGGKWEGFHSVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACAGLAPENHMLLEHRL 508
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: A0A7S1ZAK2_TRICV (Inositol-3-phosphate synthase n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S1ZAK2_TRICV)

HSP 1 Score: 159 bits (402), Expect = 5.640e-47
Identity = 78/95 (82.11%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEG-GKWEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL ELCERI VKK+G  KWE FHPVLSLLSYMLKAPLVP G PVVNALF QR A+INVMRAC GL P+NHM LEHR
Sbjct:  137 MHNTCEDSLLATPLIYDLVILGELCERITVKKDGEDKWEAFHPVLSLLSYMLKAPLVPSGAPVVNALFTQRCAVINVMRACLGLGPDNHMTLEHR 231
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: A0A7S2LGG7_9STRA (Inositol-3-phosphate synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGG7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.090e-46
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEGG-KWEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL ELC+R++VKKEG  +WE FHPVLS+LSYMLKAPLVP G PVVNALF QR AI+N+MRAC GLAP+NHM LEHR
Sbjct:   99 MHNTCEDSLLATPLIYDLVILGELCQRVQVKKEGETEWESFHPVLSILSYMLKAPLVPNGAPVVNALFTQRCAIVNLMRACLGLAPDNHMTLEHR 193
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: A0A7S0CGN9_9STRA (Inositol-3-phosphate synthase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGN9_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.100e-45
Identity = 74/95 (77.89%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEGG-KWEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLV+LSELCERI  KKEG  +WE FHPVLSLLSY++KAPLVP G PV+NALF QR AI+N+MRAC GLAP+NHM LEHR
Sbjct:  148 MHNTCEDSLLATPLIYDLVLLSELCERINAKKEGEVEWESFHPVLSLLSYLIKAPLVPDGAPVINALFTQRCAIVNLMRACVGLAPDNHMSLEHR 242
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: A0A1E7FE24_9STRA (Inositol-3-phosphate synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE24_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.570e-45
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEG-GKWEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL+ELC+RI VKKEG  +WE FHPVLSLLSYMLKAPLVP G PVVNALF QRQAIINV+RAC GL PENHM LEHR
Sbjct:  415 MHNTCEDSLLATPLIYDLVILAELCDRISVKKEGESEWEQFHPVLSLLSYMLKAPLVPNGAPVVNALFTQRQAIINVLRACLGLGPENHMSLEHR 509
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: B7FWI9_PHATC (Inositol-3-phosphate synthase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FWI9_PHATC)

HSP 1 Score: 160 bits (404), Expect = 1.060e-44
Identity = 78/95 (82.11%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEGGK-WEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL ELCERI VKKEG + WE FHPVLSLLSYMLKAPLVP G PVVNALF QR+A+INVMRAC GL P NHM LEHR
Sbjct:  414 MHNTCEDSLLATPLIYDLVILGELCERITVKKEGSEDWEAFHPVLSLLSYMLKAPLVPNGAPVVNALFTQREAVINVMRACLGLGPNNHMTLEHR 508
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: A0A7S1ZAL6_TRICV (Inositol-3-phosphate synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAL6_TRICV)

HSP 1 Score: 159 bits (402), Expect = 2.030e-44
Identity = 78/95 (82.11%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEG-GKWEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL ELCERI VKK+G  KWE FHPVLSLLSYMLKAPLVP G PVVNALF QR A+INVMRAC GL P+NHM LEHR
Sbjct:  414 MHNTCEDSLLATPLIYDLVILGELCERITVKKDGEDKWEAFHPVLSLLSYMLKAPLVPSGAPVVNALFTQRCAVINVMRACLGLGPDNHMTLEHR 508
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BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: A0A7S2S915_9STRA (Inositol-3-phosphate synthase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S915_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.060e-44
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEGGK-WEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL ELCERI VKKE  + WE FHPVLSLLSYMLKAPLVP G PV+NALF QR AIINVMRAC GLAPENHM LEHR
Sbjct:  414 MHNTCEDSLLATPLIYDLVILGELCERISVKKENSENWELFHPVLSLLSYMLKAPLVPNGAPVINALFTQRNAIINVMRACLGLAPENHMTLEHR 508
[Close]
BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: A0A1Z5KMS8_FISSO (Inositol-3-phosphate synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMS8_FISSO)

HSP 1 Score: 159 bits (402), Expect = 2.120e-44
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEGGK-WEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL ELCERI ++KEG + WE FHPVLSLLSYMLKAPLVP G PVVNALFAQRQAI N++RAC GLAPENHM LEHR
Sbjct:  414 MHNTCEDSLLATPLIYDLVILGELCERITMRKEGMEPWEAFHPVLSLLSYMLKAPLVPNGAPVVNALFAQRQAITNILRACLGLAPENHMSLEHR 508
[Close]
BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Match: B8CA22_THAPS (Inositol-3-phosphate synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA22_THAPS)

HSP 1 Score: 157 bits (396), Expect = 1.110e-43
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 MHNTCEDSLLASPLIFDLVILSELCERIEVKKEG-GKWEGFHPVLSLLSYMLKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHR 282
            MHNTCEDSLLA+PLI+DLVIL ELC R++VKKEG  +WE FHPVLSLLSYMLKAPLVP G PVVNALF QR AI+N MRAC GLAP+NHM LEHR
Sbjct:  414 MHNTCEDSLLATPLIYDLVILGELCARVQVKKEGESEWESFHPVLSLLSYMLKAPLVPNGAPVVNALFTQRCAIVNFMRACLGLAPDNHMTLEHR 508
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25225.6870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQB3_ECTSI4.570e-5594.74Inositol-3-phosphate synthase n=2 Tax=Ectocarpus T... [more]
A0A7S1ZAK2_TRICV5.640e-4782.11Inositol-3-phosphate synthase n=2 Tax=Mediophyceae... [more]
A0A7S2LGG7_9STRA1.090e-4678.95Inositol-3-phosphate synthase n=1 Tax=Skeletonema ... [more]
A0A7S0CGN9_9STRA2.100e-4577.89Inositol-3-phosphate synthase n=1 Tax=Proboscia in... [more]
A0A1E7FE24_9STRA5.570e-4583.16Inositol-3-phosphate synthase n=1 Tax=Fragilariops... [more]
B7FWI9_PHATC1.060e-4482.11Inositol-3-phosphate synthase n=1 Tax=Phaeodactylu... [more]
A0A7S1ZAL6_TRICV2.030e-4482.11Inositol-3-phosphate synthase n=1 Tax=Trieres chin... [more]
A0A7S2S915_9STRA2.060e-4483.16Inositol-3-phosphate synthase n=1 Tax=Eucampia ant... [more]
A0A1Z5KMS8_FISSO2.120e-4482.11Inositol-3-phosphate synthase n=2 Tax=Fistulifera ... [more]
B8CA22_THAPS1.110e-4380.00Inositol-3-phosphate synthase (Fragment) n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25225contigH-paniculata_contig25225:1354..2524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.2e-37
Seed eggNOG ortholog2850.Phatr45120
Preferred nameISYNA1
KEGG rclassRC01804
KEGG koko:K01858
KEGG ReactionR07324
KEGG Pathwayko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004512,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006020,GO:0006021,GO:0006066,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016051,GO:0016853,GO:0016872,GO:0019637,GO:0019751,GO:0034637,GO:0043647,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0046173,GO:0071704,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.Myo-inositol-1-phosphate synthase
EggNOG OGs2XBJN@2836,COG1260@1,KOG0693@2759
EC5.5.1.4
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size285
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25225.6870.1prot_H-paniculata_contig25225.6870.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25225 1354..2524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.2809384-CDS-H-paniculata_contig25225:1353..14401622929743.2809384-CDS-H-paniculata_contig25225:1353..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25225 1354..1440 +
1691480991.96037-CDS-H-paniculata_contig25225:1353..14401691480991.96037-CDS-H-paniculata_contig25225:1353..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25225 1354..1440 +
1622929743.302291-CDS-H-paniculata_contig25225:1849..19751622929743.302291-CDS-H-paniculata_contig25225:1849..1975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25225 1850..1975 +
1691480991.97453-CDS-H-paniculata_contig25225:1849..19751691480991.97453-CDS-H-paniculata_contig25225:1849..1975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25225 1850..1975 +
1622929743.3246763-CDS-H-paniculata_contig25225:2452..25241622929743.3246763-CDS-H-paniculata_contig25225:2452..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25225 2453..2524 +
1691480991.9861767-CDS-H-paniculata_contig25225:2452..25241691480991.9861767-CDS-H-paniculata_contig25225:2452..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25225 2453..2524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25225.6870.1

>prot_H-paniculata_contig25225.6870.1 ID=prot_H-paniculata_contig25225.6870.1|Name=mRNA_H-paniculata_contig25225.6870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MHNTCEDSLLASPLIFDLVILSELCERIEVKKEGGKWEGFHPVLSLLSYM
LKAPLVPPGTPVVNALFAQRQAIINVMRACSGLAPENHMLLEHRL
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mRNA from alignment at H-paniculata_contig25225:1354..2524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25225.6870.1 ID=mRNA_H-paniculata_contig25225.6870.1|Name=mRNA_H-paniculata_contig25225.6870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1171bp|location=Sequence derived from alignment at H-paniculata_contig25225:1354..2524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACAATACGTGTGAAGACTCGCTGCTGGCCAGCCCTCTCATCTTCGA
CCTCGTCATTCTGTCAGAGCTGTGCGAGCGTATAGAGGTGGGAGATCTCG
TCCCCTAGGATAGCGCATACCCCCTTTTTCGCTATAAGGTACCTACCCAC
TACCCACTTTGTCTCTGAGGGTTGAACACAAGTGTTGGGTGTTCCATAAG
TAAAGGACAACCGTGGGTGCTCCAACTATTTCTTGGTTATTGTGAATAGG
TAATCGCGGCCAAATGTCAGTAGATAGCCAATCTTTCAGTGTGTTATGAT
CCACAAGAGACGCTTATTGTACCTACGTTTCTATCCTACATGGGACGAAT
ATTCTTGCAGAATGCATGTCATGATCCGAAACCCGTTTGAGCGCTGTTTT
AATCTGCACCGTTTTTGTTTTTTTACACGTGCTTTTCGTGTCCTTCCCCT
AACGCCCCTTCCTCCCTCCCTCCCTCCGACGTGTGCTTGTGGACAGGTGA
AAAAAGAAGGTGGCAAATGGGAGGGATTCCACCCTGTCCTGAGCTTGCTG
TCCTACATGCTCAAGGCGCCGCTTGTGCCACCTGGCACCCCCGTCGTCAA
CGCGCTCTTCGCGCAACGTCAGGTATCGAGCGAGAATGGCCGAGTAGGTT
TGGGGGGAGGCAAGGAAAATTGCACTGATACTCGCTTTCGATGGTGGAGC
CTATATATATATATATATATATATATCAAGTTGACAACATTGCGAATTTT
CTAATTCTGAACTCCCCAGTCTGTTCTTTTCTTTTTTACTCTAAAGTTAG
GTCTCGAATTCAGCTAGGTATTATTATTGTCGCGGAACGGTCACGGTGTG
GTTGACAACGATGTTGTTGTTTCCATTTCCATCACCAACACTGTGAAATG
GACCTGAAAGGCCTTAATGTTTTTTCCTGGCGTGACCTGTTGTCCCTTTG
GCTTGAAATAGCCGAATGTCATCCATCATGCGGTGTATGTCTGTCTCTCC
TCTTGTCGTCACTTGGGATAAGGAAACTAACGTTCGAAATTGTTTTCTTG
CACTTTTTTGTATCGATTGCATTGTTCCTATTGTTGTCTGCACTCCAAGG
CCATCATCAACGTGATGCGCGCATGCTCCGGCCTTGCTCCCGAGAATCAT
ATGCTCCTGGAACACCGACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig25225:1354..2524+

>mRNA_H-paniculata_contig25225.6870.1 ID=mRNA_H-paniculata_contig25225.6870.1|Name=mRNA_H-paniculata_contig25225.6870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig25225:1354..2524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACAATACGTGTGAAGACTCGCTGCTGGCCAGCCCTCTCATCTTCGA
CCTCGTCATTCTGTCAGAGCTGTGCGAGCGTATAGAGATGCACAATACGT
GTGAAGACTCGCTGCTGGCCAGCCCTCTCATCTTCGACCTCGTCATTCTG
TCAGAGCTGTGCGAGCGTATAGAGGTGAAAAAAGAAGGTGGCAAATGGGA
GGGATTCCACCCTGTCCTGAGCTTGCTGTCCTACATGCTCAAGGCGCCGC
TTGTGCCACCTGGCACCCCCGTCGTCAACGCGCTCTTCGCGCAACGTCAG
GTGAAAAAAGAAGGTGGCAAATGGGAGGGATTCCACCCTGTCCTGAGCTT
GCTGTCCTACATGCTCAAGGCGCCGCTTGTGCCACCTGGCACCCCCGTCG
TCAACGCGCTCTTCGCGCAACGTCAGGCCATCATCAACGTGATGCGCGCA
TGCTCCGGCCTTGCTCCCGAGAATCATATGCTCCTGGAACACCGACTCGC
CATCATCAACGTGATGCGCGCATGCTCCGGCCTTGCTCCCGAGAATCATA
TGCTCCTGGAACACCGACTC
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