mRNA_H-paniculata_contig25217.6866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25217.6866.1
Unique NamemRNA_H-paniculata_contig25217.6866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25217.6866.1 vs. uniprot
Match: D7FLU3_ECTSI (Radical SAM core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU3_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 9.720e-22
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 RNVVVNLIPYNPTYAPGSEEFKEPTEEALQKFKSIVHDHGLLVTIRR 141
            RNV+VNLIPYNPTYAPGSEEFKEPTEEALQKF++IVH+HGLLVTIRR
Sbjct:  366 RNVLVNLIPYNPTYAPGSEEFKEPTEEALQKFRAIVHEHGLLVTIRR 412
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BLAST of mRNA_H-paniculata_contig25217.6866.1 vs. uniprot
Match: A0A7S3YU32_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YU32_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 7.810e-6
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 RNVVVNLIPYNPTYAPGSEEFKEPTEEALQKFKSIVHDHGLLVTIR 138
            RN+V+NLIPYNPT  P  E+++ P  E ++ F +IV + G+L T+R
Sbjct:  406 RNLVLNLIPYNPTDVP--EDYRAPARERVKAFHTIVREAGILTTVR 449
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BLAST of mRNA_H-paniculata_contig25217.6866.1 vs. uniprot
Match: A0A7C3SAI7_9BACT (Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3SAI7_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 5.060e-5
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   13 VNLIPYNPTYAPGSEEFKEPTEEALQKFKSIVHDHGLLVTIRRRENS 153
            VNLIPYNPT     +EF+ P+E A+++F+ I+ D G+ VT+R    +
Sbjct:  269 VNLIPYNPTV----DEFERPSESAIERFRQILADKGIPVTVRHERGT 311
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BLAST of mRNA_H-paniculata_contig25217.6866.1 vs. uniprot
Match: A0A7S1VED2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VED2_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 9.340e-5
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 RNVVVNLIPYNPTYAPGSEEFKEPTEEALQKFKSIVHDHGLLVTIRR 141
            RN++VNLIPYNPT     +  + P E  L +F+SIV  +G++ TIRR
Sbjct:  134 RNILVNLIPYNPTNV--KDVLQCPPESHLLEFRSIVASYGVMTTIRR 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25217.6866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLU3_ECTSI9.720e-2291.49Radical SAM core domain-containing protein n=2 Tax... [more]
A0A7S3YU32_9EUKA7.810e-647.83Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7C3SAI7_9BACT5.060e-544.68Probable dual-specificity RNA methyltransferase Rl... [more]
A0A7S1VED2_9STRA9.340e-548.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25217contigH-paniculata_contig25217:3375..3527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue9.9e-18
Seed eggNOG ortholog2880.D7FLU3
KEGG koko:K06941
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Radical SAM superfamily
EggNOG OGs2QQ98@2759,COG0820@1
Ec32 ortholog descriptionRadical SAM
Ec32 orthologEc-26_001240.1
EC2.1.1.192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.7176037-CDS-H-paniculata_contig25217:3374..35271622929742.7176037-CDS-H-paniculata_contig25217:3374..3527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25217 3375..3527 +
1691480991.7027268-CDS-H-paniculata_contig25217:3374..35271691480991.7027268-CDS-H-paniculata_contig25217:3374..3527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25217 3375..3527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25217.6866.1prot_H-paniculata_contig25217.6866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25217 3375..3527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25217.6866.1

>prot_H-paniculata_contig25217.6866.1 ID=prot_H-paniculata_contig25217.6866.1|Name=mRNA_H-paniculata_contig25217.6866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
RNVVVNLIPYNPTYAPGSEEFKEPTEEALQKFKSIVHDHGLLVTIRRREN
S
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mRNA from alignment at H-paniculata_contig25217:3375..3527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25217.6866.1 ID=mRNA_H-paniculata_contig25217.6866.1|Name=mRNA_H-paniculata_contig25217.6866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig25217:3375..3527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAACGTGGTGGTGAACCTCATCCCGTACAATCCGACGTACGCCCCTGG
GTCGGAGGAGTTCAAAGAGCCTACAGAAGAGGCGTTACAGAAGTTCAAGA
GCATTGTTCACGACCACGGCTTGTTGGTGACGATTCGCAGGCGAGAAAAC
AGC
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Coding sequence (CDS) from alignment at H-paniculata_contig25217:3375..3527+

>mRNA_H-paniculata_contig25217.6866.1 ID=mRNA_H-paniculata_contig25217.6866.1|Name=mRNA_H-paniculata_contig25217.6866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig25217:3375..3527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAACGTGGTGGTGAACCTCATCCCGTACAATCCGACGTACGCCCCTGG
GTCGGAGGAGTTCAAAGAGCCTACAGAAGAGGCGTTACAGAAGTTCAAGA
GCATTGTTCACGACCACGGCTTGTTGGTGACGATTCGCAGGCGAGAAAAC
AGCCGGAACGTGGTGGTGAACCTCATCCCGTACAATCCGACGTACGCCCC
TGGGTCGGAGGAGTTCAAAGAGCCTACAGAAGAGGCGTTACAGAAGTTCA
AGAGCATTGTTCACGACCACGGCTTGTTGGTGACGATTCGCAGGCGAGAA
AACAGC
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