mRNA_H-paniculata_contig25212.6864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig25212.6864.1
Unique Name	mRNA_H-paniculata_contig25212.6864.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.720e-8
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.880e-8
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.010e-7
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-7
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  158 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 275

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-7
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-7
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-7
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-7
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.230e-7
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M+ G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:  139 LERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Match: A0A6H5JVS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.860e-7
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1

Query:    4 LHTTMMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVRIASCEKRDVNLADIRHMVSTMYTEYLS---RPNTANLVAGRGVVMQASGGSDGGRRNHITCFFCGKRGHLKRDC 378
            L  T+M  G+ P+DF       R++LE+M + I D R++DI  +    +Y+ +++     RD +  D++ M +TM   +L    R  T   +AGRG  M         + +   CF C + GH++R+C
Sbjct:   36 LERTVMDPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVF--RDPSF-DVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMAT-------KTSGPICFECNEPGHVRRNC 153

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig25212.6864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A6H5JXA1_9PHAE	6.720e-8	29.69	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KN28_9PHAE	9.880e-8	29.69	Uncharacterized protein (Fragment) n=3 Tax=Ectocar...	[more]
A0A6H5KJB9_9PHAE	1.010e-7	29.69	Uncharacterized protein (Fragment) n=2 Tax=Ectocar...	[more]
A0A6H5JUN9_9PHAE	1.040e-7	29.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3T5_9PHAE	1.040e-7	29.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1Z9_9PHAE	1.040e-7	29.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTQ0_9PHAE	1.060e-7	29.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHG5_9PHAE	1.060e-7	29.69	Uncharacterized protein n=11 Tax=Ectocarpus sp. CC...	[more]
A0A6H5KMR7_9PHAE	1.230e-7	29.69	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JVS2_9PHAE	1.860e-7	29.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig25212	contig	H-paniculata_contig25212:455..832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	378
Cds size	363
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929742.6189294-UTR-H-paniculata_contig25212:454..469	1622929742.6189294-UTR-H-paniculata_contig25212:454..469	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig25212 455..469 +
1691480991.6695669-UTR-H-paniculata_contig25212:454..469	1691480991.6695669-UTR-H-paniculata_contig25212:454..469	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig25212 455..469 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929742.6357515-CDS-H-paniculata_contig25212:469..832	1622929742.6357515-CDS-H-paniculata_contig25212:469..832	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig25212 470..832 +
1691480991.6797926-CDS-H-paniculata_contig25212:469..832	1691480991.6797926-CDS-H-paniculata_contig25212:469..832	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig25212 470..832 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig25212.6864.1	prot_H-paniculata_contig25212.6864.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig25212 470..832 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig25212:455..832+
coding sequence from alignment at H-paniculata_contig25212:455..832+

protein sequence of mRNA_H-paniculata_contig25212.6864.1

>prot_H-paniculata_contig25212.6864.1 ID=prot_H-paniculata_contig25212.6864.1|Name=mRNA_H-paniculata_contig25212.6864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MMQSGDEPEDFLFVMDGYRNRLEEMEQPIPDDRYEDIIPRALPAEYERVR
IASCEKRDVNLADIRHMVSTMYTEYLSRPNTANLVAGRGVVMQASGGSDG
GRRNHITCFFCGKRGHLKRDC

mRNA from alignment at H-paniculata_contig25212:455..832+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig25212.6864.1 ID=mRNA_H-paniculata_contig25212.6864.1|Name=mRNA_H-paniculata_contig25212.6864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig25212:455..832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACTCCACACAACAATGATGCAGTCCGGAGATGAACCGGAAGATTTCCT
CTTCGTCATGGATGGTTATCGCAACCGTTTGGAGGAAATGGAGCAACCCA
TACCTGACGACCGCTACGAGGACATTATTCCCCGAGCCCTCCCCGCTGAG
TACGAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTGACGTCAATTTGGC
GGACATTCGACACATGGTTAGCACCATGTACACCGAATACCTCTCCCGCC
CGAATACCGCAAACCTGGTCGCAGGTCGCGGAGTCGTCATGCAGGCAAGT
GGGGGAAGTGATGGCGGCAGAAGGAACCACATAACATGTTTCTTTTGCGG
GAAGCGAGGTCACCTGAAAAGAGACTGC

Coding sequence (CDS) from alignment at H-paniculata_contig25212:455..832+

>mRNA_H-paniculata_contig25212.6864.1 ID=mRNA_H-paniculata_contig25212.6864.1|Name=mRNA_H-paniculata_contig25212.6864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig25212:455..832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCAGTCCGGAGATGAACCGGAAGATTTCCTCTTCGTCATGGATGG
TTATCGCAACCGTTTGGAGGAAATGGAGCAACCCATACCTGACGACCGCT
ACGAGGACATTATTCCCCGAGCCCTCCCCGCTGAGTACGAAAGGGTTCGT
ATTGCCAGTTGCGAGAAACGTGACGTCAATTTGGCGGACATTCGACACAT
GGTTAGCACCATGTACACCGAATACCTCTCCCGCCCGAATACCGCAAACC
TGGTCGCAGGTCGCGGAGTCGTCATGCAGGCAAGTGGGGGAAGTGATGGC
GGCAGAAGGAACCACATAACATGTTTCTTTTGCGGGAAGCGAGGTCACCT
GAAAAGAGACTGCATGATGCAGTCCGGAGATGAACCGGAAGATTTCCTCT
TCGTCATGGATGGTTATCGCAACCGTTTGGAGGAAATGGAGCAACCCATA
CCTGACGACCGCTACGAGGACATTATTCCCCGAGCCCTCCCCGCTGAGTA
CGAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTGACGTCAATTTGGCGG
ACATTCGACACATGGTTAGCACCATGTACACCGAATACCTCTCCCGCCCG
AATACCGCAAACCTGGTCGCAGGTCGCGGAGTCGTCATGCAGGCAAGTGG
GGGAAGTGATGGCGGCAGAAGGAACCACATAACATGTTTCTTTTGCGGGA
AGCGAGGTCACCTGAAAAGAGACTGC