mRNA_H-paniculata_contig2521.6862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2521.6862.1
Unique NamemRNA_H-paniculata_contig2521.6862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: D7FGR6_ECTSI (NDK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGR6_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 2.420e-105
Identity = 154/177 (87.01%), Postives = 164/177 (92.66%), Query Frame = 1 
Query:  211 SQTMGQDAPVMCAAD-FPYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            S+   Q    +CAA  F YTG+PGT+ ERSFIAIKPDGVQRQ+VGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFF GLVDYF+SGPIVAMVWEGP+VILTGRKMLGATNPN+SEPGS+RGDYCIRVGRNLIHGSDG ESAQHEIGMWFT+EECSAWPRTLDAWIVADN
Sbjct:   61 SERQQQQETALCAAPAFKYTGEPGTAHERSFIAIKPDGVQRQLVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFSGLVDYFSSGPIVAMVWEGPEVILTGRKMLGATNPNSSEPGSLRGDYCIRVGRNLIHGSDGGESAQHEIGMWFTEEECSAWPRTLDAWIVADN 237
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: A0A835YSZ5_9STRA (Nucleoside diphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ5_9STRA)

HSP 1 Score: 264 bits (675), Expect = 5.940e-83
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 1 
Query:  244 CAADFPYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            CAA FPYTG  GT  ERSFIAIKPDGVQR ++ EVISRFEKKGYKLVAMKMIW T+EMAANHY DL  +PFF  LV YFASGPIVAMVWEGPDVI TGRK+LGATNP A++ G++RGD+C+  GRN+IHGSDG ESA HEIGMWFT++ECSA+ R++D+WIVADN
Sbjct:   60 CAA-FPYTGVAGTGNERSFIAIKPDGVQRGLIAEVISRFEKKGYKLVAMKMIWATEEMAANHYDDLKGRPFFPALVKYFASGPIVAMVWEGPDVIKTGRKILGATNPQAADVGTLRGDFCLTTGRNIIHGSDGPESAAHEIGMWFTEKECSAYSRSIDSWIVADN 223
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: A0A7S2XZK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZK8_9STRA)

HSP 1 Score: 256 bits (655), Expect = 5.590e-80
Identity = 116/160 (72.50%), Postives = 135/160 (84.38%), Query Frame = 1 
Query:  259 PYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            PYTG PGT+ ER+FIA+KPDGVQR +VGE+I+RFEKKGYKLVAMK+IW T+E    HY+DL+ +PFFGGLV YF+SGPIV MVWEGPD + TGRKMLGATNP AS+PG+IRGD+C+ VGRNLIHGSD  +SA+ EI  WFT EEC  WPRTLDAWI  DN
Sbjct:   62 PYTGLPGTAHERTFIAVKPDGVQRGLVGEIIARFEKKGYKLVAMKLIWATEEKTKAHYSDLAARPFFGGLVKYFSSGPIVGMVWEGPDAVKTGRKMLGATNPLASDPGTIRGDFCVVVGRNLIHGSDATDSAEKEIANWFTPEECYDWPRTLDAWITEDN 221
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: A0A1W0ABA6_9STRA (Nucleoside diphosphate kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABA6_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.210e-75
Identity = 113/160 (70.62%), Postives = 135/160 (84.38%), Query Frame = 1 
Query:  259 PYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            PYTG PGT  ER+FIAIKPDGV+R ++ EVI+RFEKKGYKLVAMKM+  T+  A +HYADLS KPFFGGLV YFASGPIV MVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDG +SA+HEIGMWFT+ E + + R++D W+V+DN
Sbjct:   61 PYTGVPGTKHERTFIAIKPDGVERGLISEVIARFEKKGYKLVAMKMMTATEARARDHYADLSSKPFFGGLVKYFASGPIVCMVWEGNDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTQAEINDYARSIDEWVVSDN 220
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: A0A6G0XYC2_9STRA (Nucleoside diphosphate kinase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYC2_9STRA)

HSP 1 Score: 244 bits (624), Expect = 2.480e-75
Identity = 112/160 (70.00%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:  259 PYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            PYTG PGT  ER+FIAIKPDGV+R ++ EVI+RFEKKGYKL+A+K++ PT+  A  HYADL+ +PFF GLV YF+SGPIVAMVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDG ESA+HEIGMWFT EE   + R++D WIVADN
Sbjct:   62 PYTGIPGTKNERTFIAIKPDGVERGLISEVIARFEKKGYKLIALKLLTPTEARAREHYADLAGRPFFNGLVKYFSSGPIVAMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPESAKHEIGMWFTAEEIQDYERSIDEWIVADN 221
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: A0A485KUH1_9STRA (Nucleoside diphosphate kinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUH1_9STRA)

HSP 1 Score: 243 bits (620), Expect = 9.870e-75
Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = 1 
Query:  259 PYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            PYTG PGT  ER+FIAIKPDGV+R ++ EVI+RFEKKGYKLVA+K++ PT+  A  HYADLS +PFF GLV YF+SGPIVAMVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDG +SA+HEIGMWFT+ E + + R++D WIVADN
Sbjct:   62 PYTGIPGTKNERTFIAIKPDGVERGLISEVIARFEKKGYKLVALKLLTPTEARAREHYADLSGRPFFNGLVKYFSSGPIVAMVWEGTDVILTGRKILGATNPNQAPPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTQAEINDYHRSIDDWIVADN 221
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: M4B5V5_HYAAE (Nucleoside diphosphate kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B5V5_HYAAE)

HSP 1 Score: 242 bits (617), Expect = 3.380e-74
Identity = 113/160 (70.62%), Postives = 133/160 (83.12%), Query Frame = 1 
Query:  259 PYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            P+ G PGTS+ER+FIAIKPDGVQR ++ EVI+RFEKKGYKLVA+K++  T+E A  HYADLS++PFF GLVDYF SGPIV MVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDG +SA+HEI MWFT  E S + R LD WIVADN
Sbjct:   68 PHAGVPGTSKERTFIAIKPDGVQRGLISEVIARFEKKGYKLVALKLMTATEERAKAHYADLSERPFFPGLVDYFTSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEISMWFTAAEMSNYDRALDTWIVADN 227
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: W7U259_9STRA (Nucleoside diphosphate kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U259_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.610e-74
Identity = 115/171 (67.25%), Postives = 137/171 (80.12%), Query Frame = 1 
Query:  229 DAPVMCAAD-FPYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            D P +C+A   P+TG PGT +ER+FIAIKPDGVQR ++  +I+RFE KG+KLVA+KM+WPTKE A +HYADL+ KPFF GLV YF+SGPIVAMVWEG D I TGR +LGATNP A+ PG+IRGD  I VGRN+ HGSDG ESA HEI  WFT EE S +PR+LD WIV+DN
Sbjct:   59 DTPTLCSAGKAPFTGVPGTDKERTFIAIKPDGVQRGLIAAIIARFENKGFKLVALKMLWPTKEKAESHYADLATKPFFKGLVAYFSSGPIVAMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDLAISVGRNICHGSDGPESAVHEIANWFTPEEVSDYPRSLDEWIVSDN 229
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: A0A024UVV3_9STRA (Nucleoside diphosphate kinase (Fragment) n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UVV3_9STRA)

HSP 1 Score: 242 bits (617), Expect = 5.010e-74
Identity = 114/160 (71.25%), Postives = 130/160 (81.25%), Query Frame = 1 
Query:  259 PYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            PYTG PGT  ER+FIAIKPDGV+R ++ EVI RFEKKGYKLVAMK++ PT+  A  HYADLS +PFF GLV YF+SGPIVAMVWEG DVILTGRK+LGATNPN + PG++RGD  I  GRNLIHGSDG ESA+HEIGMWFT  E   + R +D WIVADN
Sbjct:   80 PYTGIPGTKNERTFIAIKPDGVERALISEVIGRFEKKGYKLVAMKLLTPTEARAREHYADLSSRPFFNGLVKYFSSGPIVAMVWEGQDVILTGRKILGATNPNQAAPGTLRGDNTISTGRNLIHGSDGPESAKHEIGMWFTAAEIQDYERAIDEWIVADN 239
[Close]
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Match: A0A067CQA9_SAPPC (Nucleoside diphosphate kinase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQA9_SAPPC)

HSP 1 Score: 239 bits (610), Expect = 3.000e-73
Identity = 110/160 (68.75%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:  259 PYTGQPGTSRERSFIAIKPDGVQRQVVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIVAMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAESAQHEIGMWFTKEECSAWPRTLDAWIVADN 738
            PYTG  GT  ER+FIAIKPDGV+R ++ EVI RFEKKGYKLVAMK++  T+  A+ HYADL+ +PFFGGLV YFASGPIV MVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDG +SA+HEIGMWFT+ E   + R++D W+VADN
Sbjct:   61 PYTGVAGTKHERTFIAIKPDGVERGLISEVIGRFEKKGYKLVAMKLMTATEARASEHYADLAGRPFFGGLVKYFASGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTQAEIQDYTRSIDEWVVADN 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2521.6862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGR6_ECTSI2.420e-10587.01NDK domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YSZ5_9STRA5.940e-8375.76Nucleoside diphosphate kinase n=1 Tax=Tribonema mi... [more]
A0A7S2XZK8_9STRA5.590e-8072.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1W0ABA6_9STRA1.210e-7570.63Nucleoside diphosphate kinase n=1 Tax=Thraustothec... [more]
A0A6G0XYC2_9STRA2.480e-7570.00Nucleoside diphosphate kinase n=1 Tax=Aphanomyces ... [more]
A0A485KUH1_9STRA9.870e-7570.00Nucleoside diphosphate kinase n=1 Tax=Aphanomyces ... [more]
M4B5V5_HYAAE3.380e-7470.63Nucleoside diphosphate kinase n=1 Tax=Hyaloperonos... [more]
W7U259_9STRA3.610e-7467.25Nucleoside diphosphate kinase n=2 Tax=Monodopsidac... [more]
A0A024UVV3_9STRA5.010e-7471.25Nucleoside diphosphate kinase (Fragment) n=5 Tax=A... [more]
A0A067CQA9_SAPPC3.000e-7368.75Nucleoside diphosphate kinase n=3 Tax=Saprolegniac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2521contigH-paniculata_contig2521:6667..11364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.5
Seed ortholog evalue2e-86
Seed eggNOG ortholog2880.D7FGR6
Preferred nameNDPK2
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Hectar predicted targeting categorymitochondrion
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007602,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009636,GO:0009639,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009941,GO:0009987,GO:0010017,GO:0010033,GO:0010035,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0023052,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032870,GO:0033554,GO:0034404,GO:0034599,GO:0034614,GO:0034641,GO:0034654,GO:0035690,GO:0042221,GO:0042455,GO:0042493,GO:0042542,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046677,GO:0046939,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0055086,GO:0061508,GO:0065007,GO:0070013,GO:0070301,GO:0070887,GO:0071214,GO:0071236,GO:0071310,GO:0071365,GO:0071478,GO:0071482,GO:0071489,GO:0071495,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097237,GO:0104004,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901700,GO:1901701
EggNOG free text desc.Nucleoside diphosphate kinase
EggNOG OGsCOG0105@1,KOG0888@2759
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-04_001140.1
EC2.7.4.6
COG Functional cat.F
BiGG ReactioniRC1080.CRv4_Au5_s16_g6072_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons7
Model size1418
Cds size693
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.1488585-UTR-H-paniculata_contig2521:6666..73431622929742.1488585-UTR-H-paniculata_contig2521:6666..7343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2521 6667..7343 -
1691480991.4136903-UTR-H-paniculata_contig2521:6666..73431691480991.4136903-UTR-H-paniculata_contig2521:6666..7343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2521 6667..7343 -
1622929742.3048408-UTR-H-paniculata_contig2521:11316..113641622929742.3048408-UTR-H-paniculata_contig2521:11316..11364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2521 11317..11364 -
1691480991.5059326-UTR-H-paniculata_contig2521:11316..113641691480991.5059326-UTR-H-paniculata_contig2521:11316..11364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2521 11317..11364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929742.1713872-CDS-H-paniculata_contig2521:7343..74001622929742.1713872-CDS-H-paniculata_contig2521:7343..7400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 7344..7400 -
1691480991.424912-CDS-H-paniculata_contig2521:7343..74001691480991.424912-CDS-H-paniculata_contig2521:7343..7400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 7344..7400 -
1622929742.1873536-CDS-H-paniculata_contig2521:7826..78741622929742.1873536-CDS-H-paniculata_contig2521:7826..7874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 7827..7874 -
1691480991.4345648-CDS-H-paniculata_contig2521:7826..78741691480991.4345648-CDS-H-paniculata_contig2521:7826..7874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 7827..7874 -
1622929742.2013988-CDS-H-paniculata_contig2521:8256..83121622929742.2013988-CDS-H-paniculata_contig2521:8256..8312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 8257..8312 -
1691480991.4478867-CDS-H-paniculata_contig2521:8256..83121691480991.4478867-CDS-H-paniculata_contig2521:8256..8312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 8257..8312 -
1622929742.22477-CDS-H-paniculata_contig2521:8593..87371622929742.22477-CDS-H-paniculata_contig2521:8593..8737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 8594..8737 -
1691480991.4580493-CDS-H-paniculata_contig2521:8593..87371691480991.4580493-CDS-H-paniculata_contig2521:8593..8737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 8594..8737 -
1622929742.2437162-CDS-H-paniculata_contig2521:9409..94521622929742.2437162-CDS-H-paniculata_contig2521:9409..9452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 9410..9452 -
1691480991.4678073-CDS-H-paniculata_contig2521:9409..94521691480991.4678073-CDS-H-paniculata_contig2521:9409..9452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 9410..9452 -
1622929742.2687438-CDS-H-paniculata_contig2521:9817..99071622929742.2687438-CDS-H-paniculata_contig2521:9817..9907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 9818..9907 -
1691480991.4838114-CDS-H-paniculata_contig2521:9817..99071691480991.4838114-CDS-H-paniculata_contig2521:9817..9907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 9818..9907 -
1622929742.2884793-CDS-H-paniculata_contig2521:11061..113161622929742.2884793-CDS-H-paniculata_contig2521:11061..11316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 11062..11316 -
1691480991.4975898-CDS-H-paniculata_contig2521:11061..113161691480991.4975898-CDS-H-paniculata_contig2521:11061..11316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2521 11062..11316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2521.6862.1prot_H-paniculata_contig2521.6862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2521 7344..11316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2521.6862.1

>prot_H-paniculata_contig2521.6862.1 ID=prot_H-paniculata_contig2521.6862.1|Name=mRNA_H-paniculata_contig2521.6862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MFSRAAPVMRRAAGRVAAARRLSTAGASSKAAGFVLSKSFAAGSFAVAGS
IAALSQTMGQDAPVMCAADFPYTGQPGTSRERSFIAIKPDGVQRQVVGEV
ISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFGGLVDYFASGPIV
AMVWEGPDVILTGRKMLGATNPNASEPGSIRGDYCIRVGRNLIHGSDGAE
SAQHEIGMWFTKEECSAWPRTLDAWIVADN*
back to top

mRNA from alignment at H-paniculata_contig2521:6667..11364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2521.6862.1 ID=mRNA_H-paniculata_contig2521.6862.1|Name=mRNA_H-paniculata_contig2521.6862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4698bp|location=Sequence derived from alignment at H-paniculata_contig2521:6667..11364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTACATACACCTCTCCCCATCAACTACCACCACGAAGACCACAACTAT
GTTCTCTCGCGCAGCACCCGTCATGAGGAGGGCCGCCGGCAGGGTGGCCG
CTGCTCGCCGCCTGTCAACTGCTGGTGCCTCCTCGAAAGCAGCAGGATTT
GTTCTCTCCAAGAGCTTTGCGGCAGGCAGCTTTGCGGTCGCAGGGAGCAT
TGCCGCCCTCAGCCAGACGATGGGGCAGGATGCTCCAGTGATGTGTGCAG
CGGACTTCCCATACACAGGGCAGCCGGGTACTTCGCGTGAGCGCTCGTTC
ATTGTGAGTTCATGTTGTAGGAGAGATGCGTAGTCCAGTTGGACGAGTAC
GTCTAATATTTTGTATCGTAGAGATGTGACCAGGAATATCGCAGAAATCC
TCCTGGTTTCTTGGTGGTGGTAAGATTTGTTCCGCATGATGAATCGAGCT
TTGCAATGTGCCGACGGCGCCATCTTGTGTATCATCTGGCTGTCCCACTT
GTACGTGACCGTCATCGCCACCATGTTTCTTAGTTGGTCAACACCGACAA
TGCTTTCGTGGTTTTTTCCATGGTGACGGTCGATATGTTGTTCCTTGTTC
CTCCTGGGGTATTTTCGATGAGAGTGACGACACGTTTTTGTGTCTATTTG
CCCCTTTGCAGACGACGGAAGCTCCAGAGCACCCGAGGCACTCTTTAATG
TTTATCCTGCCCCAGCACGAGCTCATTGCGCAACTGATCCCTTTAGACTT
TCGGCGAAACTACTGCACTCTCTTGTGCCGTTCGCGTATAAGACTACTAA
ATGAAATACGAACACTCTGGGTTGCAAATGCAATTCACACATTATCCGCA
TCTTGTTAATCATGAACGTGGAGGTATTGGTGCCCCCTTATGCAGCTTTT
GACTATCCAAGCCTTCAAATACACGCATTTAGGAAGTACTCTGTAGTGAC
CGTACACGGGCGGATACCACAAGAGTCTGGACGGCACGTTGGATGCACCC
AACATTGATCACTGAACTGGGAATTACTGCGGTGTACAGCACCACTAGTT
GAGGGTGCTCAATTTTTATCGTGTTTTTTTTAATACACGCATTATCTTTC
AGCACTTGGAGGTATTGATTGCATTCCTTCTTTTGATTGCATGTCCATAA
GCGATGGTTGCCCCTTGGCTTGTACACCTGTTTGAAGGTGGTGTCGTGAC
GGTATAATCATCAAACTGGTGTATGGGCTACACCCCCACAAATGGCACAC
CAGGCGTTTAAATATAAAATTGAAAATCAGACATGCGTGAATGAAAATAT
ACAAAGCATTCAAGAAAGGAGCAGGCTTACTCAACAGGCAAGCTAGAATT
CTAGTACCTGGTTAAACACGCGATCCTTCGAAGGGTCGCGTAACTCGTCG
CAGATGAAAAAGAAAACAGCGTACGGTATTGCTGTTGCTATTGGTCACGT
TCGGCAGGCTATCAAGCCTGACGGTGTGCAGCGGCAAGTAGTGGGAGAAG
TGATCTCCCGTTTCGAGAAGAAGGGCTACAAGCTTGTCGCGATGAAGGTG
AGCAAGGCAGTTGAGGTAGTATCGGTTTCTCTGTTGAGGTCGTACGATGT
TGGAGGGTACAGTGACTTTAAAAAAAGATGAAGGATGGTATGCCTCTACA
TGAGAGTGATACAAGCTGTGACAAACTGAGCGGGGCTTATCGCATGGGCA
ATGGGCGATATTTTGTGGGCAAGCGCGCGAGTCAAAATGACGGTCAACAT
GGCTGCCCCAGTGGCCCTGTGTACGTTGCACGTATATCGGTGATTCAGGT
ACCTGGGGAGCACAGTGTAATCGCTATATATTTTGGCATGGTCATATTCT
GTTCGCAATTCCGATATGTTGGATTGATAATCTCAGTTGCCCGTGCTTAT
CTGAAACGACAGATGATCTGGCCTACGAAGGAAATGGCTGCTAATCACTA
CGCAGGTAAGACTAAAGCACGTTGAGCAGTGCCTTGGGTTATACCCTAGG
TCACATTCGTACGCTCTAACGCGGGCGCTGGCCGTAAGTAACATAAGTGT
TGGAACTTGATACCCTGGGTGGAGATATGTTATATAGGATCAGCTGTTCC
TTCCCGAAATCAAATTAACTCTGGTCAGCTGGCTTCTATTTTAATTCTTG
CTTTTTAAAACCTCGGCTACGATGATAAGCGTGTAACTCCATTAGTTCTT
GCAAGTTTCGAATCTGTGTGTAGACATATATTTTGAAATTTTCGGGTGTT
GCATGGTTATGTTCGCCTTGTAGTGAGATGTTTGTCTATACTAGAATTTT
TCGAGTTTTGTATATGAAGATGATATTTTTCGAATGTGTGAAAAACAATT
GGTCGGAGGAAGGTGTGAATGGGGTCAGGTACTTATGGCCAAATAATAAC
GGTGGACTTGCCTTATAAAAAATCATCGCTTCACCATTAATCTCACCATT
CCTCTCAAGCAGCCCATATATATATATGGATATTGAGGAACTGTCATTCT
CTATCCTTGCGTGAAATAAGGTGGTTCCGGGAGATTTAAGTTGGTCGAGA
GTCGAGTGTTGAGCTGGAGAATCCCTCAGTAATAGGATCAAGTCCTTATG
CCCCCCTATATATTGGTCATGCATCAGACCTTTCGAAGAAGCCCTTTTTT
GGTGGTCTGGTGGACTACTTCGCAAGCGGACCTATTGTGGCCATGGTGTG
GGAAGGACCAGATGTAATCCTCACGGGGCGGAAAATGCTGGGAGCAACTA
ACCCTAACGCCTCCGAGCCAGGTGAGAGGGCACTAGAAATGTTTACACCG
TTTCACGTCTGTTTGGTGCCGACATCACTGGGAAACAAAGTTCCCGGAAA
ACGTCGGAGGTCCGTTGTCCAATTGTCTCCCGTGAGATTATTCTCTCTGG
ACAGTAAAGGCCAGTGGAGTGCGTTTTGGGCGTGACCCAACAGGAGACCG
TAAGCCACATATGAGAGGCCGACTATCCGTATGTTGAATGGTTAATATTT
CTTCCGTTTCCACCTGTGACGTGTCGTGTCATTCGGTTCTGCGTTGACAC
AGGATCCATCCGCGGGGACTACTGTATCCGAGTTGGCCGCAACCTCATCC
ACGGATCTGTGAGTCATGATTCCTGTGTTGCTTTTTAAACACGAGAACCA
TCCTCGCTTATTCCGTTCGACCCTCTACTCCACGAGGCGTGTTGGTCATA
CATTTGATCATCTAGTGGGTGCAGCTACGCTTTCAACAATGCAATTTGTG
CCCTTCTCGACCGAAGGACTCGCTGCTCCTTCGTCTAGATTCATGTTTTA
AGGAGTCACTTGAAGGCAGACTTGATGGACTATTTTGAGATTACCGTTTC
GAGTTGTGCGCAATAAGCCCGAAACGTTAAATCTGGAATCTTATTGTTTG
AACACAACTTGGCATCATAACGAAAAAACTTGTGCAGACATGAAAACGCT
GACGCTGTGGTTGCTGTGAAAATTGTATGGTGTCTGGCAGGATGGCGCAG
AGAGCGCCCAGCACGAGATCGGCATGTGGTTCACCAAGGTGAGCGTTATA
CCCAATATTCTTGTAGGAGGTACGATGACTGAATTAATCAGCCGTTGATT
GGGAGTTGAAATCGCTCATGAGATCGGTCTGTACGACCTCACGACCCTTT
GGTATCGAAGGGTCCAGCATTTTGTCGGTGTCATGAGCCGTCAAAACTTG
CTCCACTCTCTATACTCCTGAAAGCGATAGTGGAGTGAGTTGAATATGCT
GGATCAAATCTCCGAGGCGCTTTGCTTCTAAATCACTGCGTGAAAAAAAA
TTTGTAGCGGTATGTATGTACCCACGTCTTGGTGCGAAAGTGTATGAATT
TGAACTGTTCCGGTATTAATGTTGCTTTTTGTAGTAATTCTCATCCATGT
CACCGTTCTCCACCCAGATCTCCTTTCTGTATCCATATTGTTAATGTCCG
TGACTTCGTCACAGGAGGAGTGTTCGGCGTGGCCGCGTACCCTGGATGCT
TGGATCGTCGCCGACAACTAAGTTGCTTCGATTATTTGGGGGGGGAAAAG
TCAAACGGTTGTAGTGATTTAAAAAAAAGAGAGATGTGAAGGACTAGTTG
CCACAAACCTCGTTTGTATCACCAGAAGTTAGGCATACCAACACCGATAA
GAATCGGCTTCCGGTGTATTCTCGGATTTTTGTTTCCGCCGGCTGTACAT
ACTTTCAGCAGCCTGTGACTTGAGGATGTTGATGGTTCTTGGCATAATGA
TGTGGGCTGCATGTTGTAATCGATGAATCCTTGCGTGGTCACAAAAATCC
AGAGTATACGAATAAGTGCATATCGACTTCATGGCCAGAGGTGACGTGTC
TGGTGTGTGAGACGTCCTCTTTGACTGATATCCGGTTGATTCCAACCTGA
ATAGTGGTGACATCACCGACTTGTATGCCAATGTACTGATCGTCTGGGTG
ATGGTGCCTTTAATGAACCAGATTCCGTCATACTCATCTTAGCCACCTAA
AAATCGATAGAAGGTTGAACTTCATCGGAAAAATCCTCTTTTTCTCCGTT
TTTGCGAAGTCAAGGTTGGATGAGTAGAACCATGAAGTTGGTCATGGATA
ATGGAGTCGTCGCACAATGCCTGATGGTGGAAGGTTGAGGGAGAGCGTCT
TAAACGTACGCACTTCGGAACAATTGACGATCGTGCACATCGTTTTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2521:6667..11364-

>mRNA_H-paniculata_contig2521.6862.1 ID=mRNA_H-paniculata_contig2521.6862.1|Name=mRNA_H-paniculata_contig2521.6862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig2521:6667..11364- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTCTCGCGCAGCACCCGTCATGAGGAGGGCCGCCGGCAGGGTGGC
CGCTGCTCGCCGCCTGTCAACTGCTGGTGCCTCCTCGAAAGCAGCAGGAT
TTGTTCTCTCCAAGAGCTTTGCGGCAGGCAGCTTTGCGGTCGCAGGGAGC
ATTGCCGCCCTCAGCCAGACGATGGGGCAGGATGCTCCAGTGATGTGTGC
AGCGGACTTCCCATACACAGGGCAGCCGGGTACTTCGCGTGAGCGCTCGT
TCATTATGTTCTCTCGCGCAGCACCCGTCATGAGGAGGGCCGCCGGCAGG
GTGGCCGCTGCTCGCCGCCTGTCAACTGCTGGTGCCTCCTCGAAAGCAGC
AGGATTTGTTCTCTCCAAGAGCTTTGCGGCAGGCAGCTTTGCGGTCGCAG
GGAGCATTGCCGCCCTCAGCCAGACGATGGGGCAGGATGCTCCAGTGATG
TGTGCAGCGGACTTCCCATACACAGGGCAGCCGGGTACTTCGCGTGAGCG
CTCGTTCATTGCTATCAAGCCTGACGGTGTGCAGCGGCAAGTAGTGGGAG
AAGTGATCTCCCGTTTCGAGAAGAAGGGCTACAAGCTTGTCGCGATGAAG
GCTATCAAGCCTGACGGTGTGCAGCGGCAAGTAGTGGGAGAAGTGATCTC
CCGTTTCGAGAAGAAGGGCTACAAGCTTGTCGCGATGAAGATGATCTGGC
CTACGAAGGAAATGGCTGCTAATCACTACGCAGATGATCTGGCCTACGAA
GGAAATGGCTGCTAATCACTACGCAGACCTTTCGAAGAAGCCCTTTTTTG
GTGGTCTGGTGGACTACTTCGCAAGCGGACCTATTGTGGCCATGGTGTGG
GAAGGACCAGATGTAATCCTCACGGGGCGGAAAATGCTGGGAGCAACTAA
CCCTAACGCCTCCGAGCCAGACCTTTCGAAGAAGCCCTTTTTTGGTGGTC
TGGTGGACTACTTCGCAAGCGGACCTATTGTGGCCATGGTGTGGGAAGGA
CCAGATGTAATCCTCACGGGGCGGAAAATGCTGGGAGCAACTAACCCTAA
CGCCTCCGAGCCAGGATCCATCCGCGGGGACTACTGTATCCGAGTTGGCC
GCAACCTCATCCACGGATCTGATCCATCCGCGGGGACTACTGTATCCGAG
TTGGCCGCAACCTCATCCACGGATCTGATGGCGCAGAGAGCGCCCAGCAC
GAGATCGGCATGTGGTTCACCAAGGATGGCGCAGAGAGCGCCCAGCACGA
GATCGGCATGTGGTTCACCAAGGAGGAGTGTTCGGCGTGGCCGCGTACCC
TGGATGCTTGGATCGTCGCCGACAACTAAGAGGAGTGTTCGGCGTGGCCG
CGTACCCTGGATGCTTGGATCGTCGCCGACAACTAA
back to top