mRNA_H-paniculata_contig25200.6860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25200.6860.1
Unique NamemRNA_H-paniculata_contig25200.6860.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25200.6860.1 vs. uniprot
Match: D8LAZ3_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ3_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.930e-55
Identity = 86/123 (69.92%), Postives = 104/123 (84.55%), Query Frame = 1 
Query:    1 RFVSFFANNGTRSTNDVRVLANSCASTVRYGQKRDDFNFLRSSRFRLGFYEGEVILEVDARNIGVWRKCISTMVPDMPQGWLDRVGVAISSETGREVANNHDIMSLEFYSQRSQAFDSNVVDG 369
            +FVSF ANNGTR+T DVR+ ANSCAST+RY Q RDDFNFL+ SR RLG+Y+GE+ LEVDARN+GVWRKCI+T V DMP+GWLDR GV +  ET REV+NNHD+MSLE Y+++S AFD+  VDG
Sbjct:  191 QFVSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLGYYDGEISLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEVYTEKSDAFDAKKVDG 313
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BLAST of mRNA_H-paniculata_contig25200.6860.1 vs. uniprot
Match: A0A835YN92_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN92_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.650e-15
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:    1 RFVSFFANNGTRSTNDVRVLANSCASTVRYGQKRDDFNFLRSSRFRLGFYEGEVILEVDARNIGVWRKCISTMVPDMPQGWLDRVGVAISSETGREVANNHDIMSLEFYSQRSQAF 348
            R VS   ++G R+   ++     C + VRY + RDDFN LR++R R+   E    L++DARN G WR+C++    D+P+GW +R    + +    E +NN+D++SL  Y     A+
Sbjct:  198 RDVSVVMSDGRRTREQIQSNLVGCNANVRYWEGRDDFNVLRATRIRVN--ENLFTLDIDARNTGRWRRCVTMNTVDLPRGWAERATAGLLAGNQAE-SNNNDVLSLRLYKSADSAW 310
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BLAST of mRNA_H-paniculata_contig25200.6860.1 vs. uniprot
Match: A0A835ZHK2_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.080e-12
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:    1 RFVSFFANNGTRSTNDVRVLANSCASTVRYGQKRDDFNFLRSSRFRLGFY-EGEVILEVDARNIGVWRKCISTMVPDMPQGWLDRVGVAISSETGREVANNH 303
            R +S   NNG +    V      C + +RY + RDDF  L+SSR RL F  +  +ILEVD+RN G WR+C      D+P+ W  R      S  G +V N +
Sbjct:   25 RDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYR------SYVGLQVRNRY 120
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BLAST of mRNA_H-paniculata_contig25200.6860.1 vs. uniprot
Match: D8LXG0_BLAHO (L-type lectin-like domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LXG0_BLAHO)

HSP 1 Score: 56.2 bits (134), Expect = 9.400e-7
Identity = 30/86 (34.88%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:   70 CASTVRYGQKRDDFNFLRSSRFRLGFYE--GEVILEVDARNIGVWRKCISTMVPDMPQGWLDRVGVAISSETGREVANNHDIMSLE 321
            C +  R+ +KR DF+    +  ++G+ E  G V + +D +N G +  CI   + D+P GW  +  + IS+ TG ++A+NHDI+S+E
Sbjct:  167 CYARYRFHEKRQDFSVDNYAVVKIGYSEITGMVRVAIDEKNTGNYHICIHEHI-DLPAGWWRKATIGISATTG-QLADNHDILSVE 250
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BLAST of mRNA_H-paniculata_contig25200.6860.1 vs. uniprot
Match: UPI000711E478 (mannose-binding protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E478)

HSP 1 Score: 53.9 bits (128), Expect = 6.510e-6
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:   70 CASTVRYGQKRDDFNFLRSSRFRLGFYEGE---VILEVDARNIGVWRKCISTMVPDMPQGWLDRVGVAISSETGREVANNHDIMSLEFY 327
            C S  RY +KR DF+    +  ++G YEG+   V + +D +N G +  C +  +   P  W   + + ISS TG ++A+NHDI+S+E Y
Sbjct:  167 CYSKYRYHEKRQDFSVDNYAVVKIG-YEGDTQTVRVSIDEKNTGEFHTCFTDTLNLSPD-WWHNIHIGISSTTG-QLADNHDILSVETY 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25200.6860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LAZ3_ECTSI1.930e-5569.92L-type lectin-like domain-containing protein n=2 T... [more]
A0A835YN92_9STRA1.650e-1535.34Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A835ZHK2_9STRA2.080e-1238.24L-type lectin-like domain-containing protein n=1 T... [more]
D8LXG0_BLAHO9.400e-734.88L-type lectin-like domain-containing protein n=1 T... [more]
UPI000711E4786.510e-635.96mannose-binding protein n=1 Tax=Blastocystis sp. s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25200contigH-paniculata_contig25200:333..2228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue3.2e-46
Seed eggNOG ortholog2880.D8LAZ3
Hectar predicted targeting categoryother localisation
EggNOG OGs2EVAS@1,2SXBA@2759
Ec32 ortholog descriptionConcanavalin A-like lectin/glucanase domain
Ec32 orthologEc-27_005860.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size369
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25200.6860.1prot_H-paniculata_contig25200.6860.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25200 333..2228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.958297-CDS-H-paniculata_contig25200:332..5031622929741.958297-CDS-H-paniculata_contig25200:332..503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25200 333..503 +
1691480991.3457422-CDS-H-paniculata_contig25200:332..5031691480991.3457422-CDS-H-paniculata_contig25200:332..503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25200 333..503 +
1622929741.9868972-CDS-H-paniculata_contig25200:1101..12511622929741.9868972-CDS-H-paniculata_contig25200:1101..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25200 1102..1251 +
1691480991.3570223-CDS-H-paniculata_contig25200:1101..12511691480991.3570223-CDS-H-paniculata_contig25200:1101..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25200 1102..1251 +
1622929742.0000963-CDS-H-paniculata_contig25200:2180..22281622929742.0000963-CDS-H-paniculata_contig25200:2180..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25200 2181..2228 +
1691480991.3651538-CDS-H-paniculata_contig25200:2180..22281691480991.3651538-CDS-H-paniculata_contig25200:2180..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25200 2181..2228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25200.6860.1

>prot_H-paniculata_contig25200.6860.1 ID=prot_H-paniculata_contig25200.6860.1|Name=mRNA_H-paniculata_contig25200.6860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
RFVSFFANNGTRSTNDVRVLANSCASTVRYGQKRDDFNFLRSSRFRLGFY
EGEVILEVDARNIGVWRKCISTMVPDMPQGWLDRVGVAISSETGREVANN
HDIMSLEFYSQRSQAFDSNVVDG
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mRNA from alignment at H-paniculata_contig25200:333..2228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25200.6860.1 ID=mRNA_H-paniculata_contig25200.6860.1|Name=mRNA_H-paniculata_contig25200.6860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig25200:333..2228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTGTTTCGTTCTTCGCCAACAACGGCACCCGCAGCACTAACGATGT
TCGCGTACTAGCAAACAGTTGTGCTTCGACCGTCCGCTACGGTCAAAAGC
GTGACGACTTCAATTTCCTGAGGTCTTCCCGCTTTCGCCTGGGCTTCTAT
GAGGGTGAGGTGATCCTTGAGGTGAGTGAGAGGAAAGGTTCCTTTTCTGT
GTATTGCCATGCTCCTTTTTATTTTTATTTTTGTATTTGGAAACTAGTCG
TTTTTTGTGTGGAAAATAAATGCTCTATAGGAATAGATGTGTAATGTAGT
TTAAGAGGCAAAAATTATTGTAACAATTCGACCGAGGTTAATCGACAAAT
AAAAAAAAAACCCGTTGGGTATATGGTAAATTACCCTAAAAACACCTTTA
AAAGGCGTAATAATCACTTAACGTCTGTCGAGGATAGTTACCTCTTATTT
TGTAAGAGGTATGTAAAATGTAATGTTTTCGTTGTTGTTTTTGTGCGTCC
AATCGTATTACCGGATTGGATTTCGTTGGAAGGCAATAATCGAACGATCG
TAAGAGCGGCCTCCTGATTGGATAGGATATTTCTCCTCTGTATTTCGGAC
CCCCCGATAGCAGCAGCCTGACCTGGAGAAGAACACAAACAATAAGAACG
TGGACTAGAGTGGACTTAGTTTTTGGCATGTGTCGTCTGTACTCGTGTCT
GTCGTTTGCTTGCTTTTTCATTTCGTGTTTGGAATTGCTTTGTATTGACT
GGTTATCTTACTTTTGAAGGTGGATGCCCGGAATATTGGTGTGTGGCGGA
AGTGCATATCCACCATGGTTCCTGACATGCCTCAGGGCTGGTTGGACAGA
GTGGGTGTGGCTATCTCGTCCGAGACGGGGAGGGAGGTTGCCAACAACCA
TGACATCATGAGTCTTGAGGTACGTGTAGCGGAGTTATTATCGTTCTCCT
TTTTTTTTTTTTCCCCTTAATATCGTTTTTCTTCTCTTTTTGCGGTATAT
GTATATTCATGTGTTTTTTTTTTTTTGTCATTTGTCGTTCAGCTATTTAT
TCATTTGTGAATATTTTAAAGTACTTATATATTCATTTAAAAATATATAT
CATGAGTGATAGTTATATATATATATGTATGTATATCCTTTTCTTGAGTG
TTTTTGTGGTTTGTCCGTCGATGAAGTTGGTAAAAATATTTTCAATTTTT
ACATACTTTTTCACAGGACATATATAGAAGATCGCTAACCAGGGGAAAAA
AGCAGACATGGTTGTCCACAAACCGTTCCTTGGCGTGAGCATGTTAAAAC
GGCTGTGTATTACCCGGTGGTGCAAGCATGCAGATGGACAAGGCTTCGGG
ACCCGGAGCTTACTAATATTATCCATTCAGGACCAAATCGATATTCACGA
ACAGAGCGTTGTTTTCGCAAACACTTTCGTTTTGTGCTCTCTTCCCATCC
CTTCGCTTCGTTTAGTGTATTTCTTTACTTGGTCAGCTGCATGGTAGAAA
ACCCCAACAGGGGCGTTTTAGATCATGTCACGGTAGTAGCAAGGGTTAAC
TTCTGATTAGACGGTGGGAAAGTGTTGAACGGGGGTATTTGATTTTATGT
GATTTGTTGAGTGGATTTACTTGTGAAAATCAGACGGTGGGGTGAGTTAT
TAAATGGGATTTTTTCAATCTGTCTGTTTTGTGCCATGTAAAAGCTAGCT
CTTTCATGCCCACCTTCCCCCCCCCCCTAGTGGTTGAATGCTGCTGATAA
GTGTGTACGACTGCGGATTGAAGTCAACTACAAAAGCTTAACGTGGGTAC
AACCTCCTCTCCTCTCCTCTCCTCTCACCGTGTTCATTCTGTGGGAAGTT
TTATTCTCAAAGGTCCCAAGCGTTCGACAGCAACGTGGTAGACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig25200:333..2228+

>mRNA_H-paniculata_contig25200.6860.1 ID=mRNA_H-paniculata_contig25200.6860.1|Name=mRNA_H-paniculata_contig25200.6860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig25200:333..2228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTGTTTCGTTCTTCGCCAACAACGGCACCCGCAGCACTAACGATGT
TCGCGTACTAGCAAACAGTTGTGCTTCGACCGTCCGCTACGGTCAAAAGC
GTGACGACTTCAATTTCCTGAGGTCTTCCCGCTTTCGCCTGGGCTTCTAT
GAGGGTGAGGTGATCCTTGAGAGGTTTGTTTCGTTCTTCGCCAACAACGG
CACCCGCAGCACTAACGATGTTCGCGTACTAGCAAACAGTTGTGCTTCGA
CCGTCCGCTACGGTCAAAAGCGTGACGACTTCAATTTCCTGAGGTCTTCC
CGCTTTCGCCTGGGCTTCTATGAGGGTGAGGTGATCCTTGAGGTGGATGC
CCGGAATATTGGTGTGTGGCGGAAGTGCATATCCACCATGGTTCCTGACA
TGCCTCAGGGCTGGTTGGACAGAGTGGGTGTGGCTATCTCGTCCGAGACG
GGGAGGGAGGTTGCCAACAACCATGACATCATGAGTCTTGAGGTGGATGC
CCGGAATATTGGTGTGTGGCGGAAGTGCATATCCACCATGGTTCCTGACA
TGCCTCAGGGCTGGTTGGACAGAGTGGGTGTGGCTATCTCGTCCGAGACG
GGGAGGGAGGTTGCCAACAACCATGACATCATGAGTCTTGAGTTTTATTC
TCAAAGGTCCCAAGCGTTCGACAGCAACGTGGTAGACGGCTTTTATTCTC
AAAGGTCCCAAGCGTTCGACAGCAACGTGGTAGACGGC
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