mRNA_H-paniculata_contig252.6858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig252.6858.1
Unique NamemRNA_H-paniculata_contig252.6858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: D8LCK6_ECTSI (Protein transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCK6_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.540e-61
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 MDHWDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            M+ WDV  AEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPL+YDPIRCNG  CGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI
Sbjct:    1 MEVWDVLGAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLAYDPIRCNG--CGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 99
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: A0A7S2Y1K9_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1K9_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.150e-55
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MDHWDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            M+ WD  +AEERD  RFSWNVWPSSRLEATRIVVPVGCLYTP+K   + PPPL+YDPIRCNG  CGAILNPY Q+DFM+KLW CPFCMQRNHF PHYAENI
Sbjct:    1 MEGWDWGAAEERDGARFSWNVWPSSRLEATRIVVPVGCLYTPLKRLENMPPPLAYDPIRCNG--CGAILNPYCQIDFMTKLWCCPFCMQRNHFLPHYAENI 99
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: A0A7S4D7Q8_HETAK (Protein transport protein SEC23 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7Q8_HETAK)

HSP 1 Score: 175 bits (444), Expect = 9.920e-54
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 MDHWDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            M+ WDV +AEERD  RFSWNVWPSS+LEATRIVVP+GCLYTP+K     PP L+YDPIRCNG  CG ILNP+ Q+DF +KLW CPFC QRNHFPPHYAENI
Sbjct:    1 MEGWDVHAAEERDGARFSWNVWPSSKLEATRIVVPLGCLYTPLKKIEGMPPALAYDPIRCNG--CGGILNPFCQIDFRTKLWVCPFCQQRNHFPPHYAENI 99
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: A0A835YT42_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT42_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.430e-48
Identity = 75/98 (76.53%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:   10 WDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            WD++  EERD VRFSWNVWPSS+LEATRIVVP GCLY+P+K     PP L+YDPIRCNG  CGAILNPYAQ+D+ SKLW CPFCM RNHFPPHYAENI
Sbjct:   10 WDLQGNEERDGVRFSWNVWPSSKLEATRIVVPTGCLYSPLKRLEGMPPALAYDPIRCNG--CGAILNPYAQIDYRSKLWACPFCMNRNHFPPHYAENI 105
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: A0A7S3HKU0_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKU0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.270e-47
Identity = 68/101 (67.33%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 MDHWDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
               WD    E+RD +R SWN WPSSR+EATRIVVP+GCLY+P+K   + P  L+YDPIRCNG  C A+LNPY QVDF +KLWTCPFC  RNHFPPHYAENI
Sbjct:    2 QQQWDFHGPEQRDGIRNSWNTWPSSRIEATRIVVPLGCLYSPLKRIENMPGSLAYDPIRCNG--CTAVLNPYVQVDFRTKLWTCPFCTGRNHFPPHYAENI 100
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: A0A8J2WHU7_9STRA (Protein transport protein SEC23 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WHU7_9STRA)

HSP 1 Score: 164 bits (414), Expect = 5.270e-45
Identity = 74/101 (73.27%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 MDHWDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            MD   +++ EERD VR SWNVWPSSRLEATRIVVP+G LYTP+K   + PPPL YDPIRCNG  CGA+LNPY Q+DF +KLWTCPFC+ RNHFPPHYAENI
Sbjct:    1 MDMSSIQAQEERDGVRLSWNVWPSSRLEATRIVVPIGALYTPLKPIGN-PPPLVYDPIRCNG--CGALLNPYCQLDFRTKLWTCPFCLGRNHFPPHYAENI 98
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: W7U0J5_9STRA (Protein transport protein SEC23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0J5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 8.740e-45
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   28 EERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            EE+D +R SW VWPSSR+E TRIVVPV  LYTP++     P PL YDPIRCNG  CG +LNPY  VDF SK+WTCPFCM RNHFPPHYAENI
Sbjct:   26 EEKDGLRMSWGVWPSSRIEVTRIVVPVAGLYTPLRRIETMPAPLEYDPIRCNG--CGGVLNPYCSVDFRSKVWTCPFCMNRNHFPPHYAENI 115
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: F0XWM5_AURAN (Protein transport protein SEC23 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWM5_AURAN)

HSP 1 Score: 163 bits (412), Expect = 1.030e-44
Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 MDHWDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            MD   +++ EERD VR SWNVWPSSRLEATRIV+P+G LYTP+K   + PPPL YDPIRCNG  CGA+LNPY QVD+ +KLWTCPFC+ RNHFPPHYAENI
Sbjct:    1 MDISSIQAQEERDGVRLSWNVWPSSRLEATRIVIPIGALYTPLKPIGN-PPPLIYDPIRCNG--CGALLNPYCQVDYRTKLWTCPFCLGRNHFPPHYAENI 98
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: A0A6U3YQE8_9STRA (Protein transport protein SEC23 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YQE8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.560e-43
Identity = 71/100 (71.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:   10 WDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPP--LSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAENI 303
            WDV + EERD  R SWNVWPSSRLEATRIVVPVGCLYTP+K     PP   L YDPIRCN   CGA+LNPY Q+DF +KLW+CPFC++RNHFPP YAEN+
Sbjct:   16 WDVLAMEERDGARLSWNVWPSSRLEATRIVVPVGCLYTPLKRLGSMPPTGALPYDPIRCNN--CGAVLNPYCQIDFRTKLWSCPFCLKRNHFPPLYAENM 113
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BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Match: T1HWT2_RHOPR (Protein transport protein SEC23 n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1HWT2_RHOPR)

HSP 1 Score: 144 bits (362), Expect = 2.340e-42
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   16 VRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYA 294
            ++ +EERD +RF+WNVWPSSRLEATR+VVPVGCLY P+K R+D PP L YDP++C  N C AILNP  QVD+ +KLW C FC QRN FPP YA
Sbjct:    8 IQQSEERDGIRFTWNVWPSSRLEATRLVVPVGCLYQPLKERYDLPPIL-YDPVQCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYA 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig252.6858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCK6_ECTSI3.540e-6193.07Protein transport protein SEC23 n=2 Tax=Ectocarpus... [more]
A0A7S2Y1K9_9STRA1.150e-5579.21Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A7S4D7Q8_HETAK9.920e-5474.26Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A835YT42_9STRA1.430e-4876.53Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
A0A7S3HKU0_9STRA1.270e-4767.33Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A8J2WHU7_9STRA5.270e-4573.27Protein transport protein SEC23 n=1 Tax=Pelagomona... [more]
W7U0J5_9STRA8.740e-4570.65Protein transport protein SEC23 n=1 Tax=Nannochlor... [more]
F0XWM5_AURAN1.030e-4472.28Protein transport protein SEC23 n=1 Tax=Aureococcu... [more]
A0A6U3YQE8_9STRA3.560e-4371.00Protein transport protein SEC23 n=1 Tax=Dictyocha ... [more]
T1HWT2_RHOPR2.340e-4266.67Protein transport protein SEC23 n=1 Tax=Rhodnius p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig252contigH-paniculata_contig252:41286..41594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.2e-51
Seed eggNOG ortholog2880.D8LCK6
Preferred nameSEC23A
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001501,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003330,GO:0003331,GO:0003400,GO:0003674,GO:0005096,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007163,GO:0007275,GO:0007389,GO:0007399,GO:0007424,GO:0007517,GO:0007591,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008360,GO:0008363,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016203,GO:0016236,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019898,GO:0019941,GO:0022008,GO:0022407,GO:0022409,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030155,GO:0030163,GO:0030198,GO:0030234,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030695,GO:0031090,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033333,GO:0033334,GO:0033339,GO:0033554,GO:0034394,GO:0034613,GO:0034622,GO:0034976,GO:0035017,GO:0035107,GO:0035138,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035293,GO:0035295,GO:0035459,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048471,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048699,GO:0048701,GO:0048702,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060538,GO:0060541,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061061,GO:0061448,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071711,GO:0071840,GO:0072657,GO:0072659,GO:0090110,GO:0090113,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903053,GO:1903055,GO:1903530,GO:1903532,GO:1904888,GO:1990778,GO:2000026
EggNOG free text desc.COPII-coated vesicle budding
EggNOG OGsCOG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.7625618-CDS-H-paniculata_contig252:41285..415941622929741.7625618-CDS-H-paniculata_contig252:41285..41594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 41286..41594 +
1691480991.2473552-CDS-H-paniculata_contig252:41285..415941691480991.2473552-CDS-H-paniculata_contig252:41285..41594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 41286..41594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig252.6858.1prot_H-paniculata_contig252.6858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig252 41286..41594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig252.6858.1

>prot_H-paniculata_contig252.6858.1 ID=prot_H-paniculata_contig252.6858.1|Name=mRNA_H-paniculata_contig252.6858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MDHWDVRSAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAP
PPLSYDPIRCNGNGCGAILNPYAQVDFMSKLWTCPFCMQRNHFPPHYAEN
IR*
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mRNA from alignment at H-paniculata_contig252:41286..41594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig252.6858.1 ID=mRNA_H-paniculata_contig252.6858.1|Name=mRNA_H-paniculata_contig252.6858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig252:41286..41594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCACTGGGACGTACGTAGCGCTGAGGAACGAGATGCTGTCCGGTT
CTCGTGGAATGTCTGGCCGAGCTCTCGGCTCGAAGCCACAAGGATCGTGG
TGCCCGTGGGCTGCCTGTACACGCCAATGAAGAGTCGGCACGATGCACCC
CCGCCGCTGTCCTACGATCCCATCCGCTGCAATGGCAACGGCTGCGGAGC
GATCCTCAACCCTTACGCCCAGGTGGACTTCATGAGCAAGCTGTGGACGT
GCCCATTCTGCATGCAACGGAATCATTTCCCGCCCCATTACGCGGAGAAT
ATCAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig252:41286..41594+

>mRNA_H-paniculata_contig252.6858.1 ID=mRNA_H-paniculata_contig252.6858.1|Name=mRNA_H-paniculata_contig252.6858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig252:41286..41594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCACTGGGACGTACGTAGCGCTGAGGAACGAGATGCTGTCCGGTT
CTCGTGGAATGTCTGGCCGAGCTCTCGGCTCGAAGCCACAAGGATCGTGG
TGCCCGTGGGCTGCCTGTACACGCCAATGAAGAGTCGGCACGATGCACCC
CCGCCGCTGTCCTACGATCCCATCCGCTGCAATGGCAACGGCTGCGGAGC
GATCCTCAACCCTTACGCCCAGGTGGACTTCATGAGCAAGCTGTGGACGT
GCCCATTCTGCATGCAACGGAATCATTTCCCGCCCCATTACGCGGAGAAT
ATCAGGTAGATGGACCACTGGGACGTACGTAGCGCTGAGGAACGAGATGC
TGTCCGGTTCTCGTGGAATGTCTGGCCGAGCTCTCGGCTCGAAGCCACAA
GGATCGTGGTGCCCGTGGGCTGCCTGTACACGCCAATGAAGAGTCGGCAC
GATGCACCCCCGCCGCTGTCCTACGATCCCATCCGCTGCAATGGCAACGG
CTGCGGAGCGATCCTCAACCCTTACGCCCAGGTGGACTTCATGAGCAAGC
TGTGGACGTGCCCATTCTGCATGCAACGGAATCATTTCCCGCCCCATTAC
GCGGAGAATATCAGGTAG
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