mRNA_H-paniculata_contig252.6856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig252.6856.1
Unique NamemRNA_H-paniculata_contig252.6856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig252.6856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig252contigH-paniculata_contig252:10501..12669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size465
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig252.6856.1prot_H-paniculata_contig252.6856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig252 10501..12655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.6173735-CDS-H-paniculata_contig252:10500..108661622929741.6173735-CDS-H-paniculata_contig252:10500..10866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 10501..10866 -
1691480991.1831179-CDS-H-paniculata_contig252:10500..108661691480991.1831179-CDS-H-paniculata_contig252:10500..10866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 10501..10866 -
1622929741.633063-CDS-H-paniculata_contig252:12571..126551622929741.633063-CDS-H-paniculata_contig252:12571..12655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 12572..12655 -
1691480991.1937673-CDS-H-paniculata_contig252:12571..126551691480991.1937673-CDS-H-paniculata_contig252:12571..12655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig252 12572..12655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929741.648872-UTR-H-paniculata_contig252:12655..126691622929741.648872-UTR-H-paniculata_contig252:12655..12669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig252 12656..12669 -
1691480991.2022789-UTR-H-paniculata_contig252:12655..126691691480991.2022789-UTR-H-paniculata_contig252:12655..12669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig252 12656..12669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig252.6856.1

>prot_H-paniculata_contig252.6856.1 ID=prot_H-paniculata_contig252.6856.1|Name=mRNA_H-paniculata_contig252.6856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MLLQRAVAARGRAGRPADIQVCLRSYLEYVNRRATAATAPSRIRERRSVF
TTTGASLEHNVEPAAVAALNGSDGQDDASSSNNTKPNSAGGHGRGRDGSL
RSFDRTQDRNSETRQGDTVIAETRNKVAATRMGPAALTPTVSSSVPTGAG
back to top

mRNA from alignment at H-paniculata_contig252:10501..12669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig252.6856.1 ID=mRNA_H-paniculata_contig252.6856.1|Name=mRNA_H-paniculata_contig252.6856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2169bp|location=Sequence derived from alignment at H-paniculata_contig252:10501..12669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACGCTGTTGCCATGCTCTTGCAACGAGCCGTTGCGGCTCGTGGTAGA
GCAGGGCGACCTGCTGATATACAGGTTTGTCTGCGCAGCTATTTGGAGGT
GAGATACATCCTGTGCCTCGTGCAATTCAGAAACAAGCACGAAGCAGATG
ACACACACAGCTGTCAGAATATCAGTGCGGCGGGTATCAACGCAAGTCGT
GGTGTTTGGTTGTGTTCCACTACTTAGAGTAGTTGTGTTGGCAATTGTGA
ACCCTTCAGGGAGCTAGCCATGCCAAAGCACAACAAAGCTACCATGTACC
CCCCCCCCACCCACTCTTCCCCGCCCGAAGATTATTGGATGAGACCTGGT
ACCGATGGGGTGGGTCGCTGGCATTATCGAGAGAGGCTCCAAATACGTGA
TGCCCGCCTCACCATAGTTGAAGTAAGACATCAACCACTCCAAGCTAGTT
TTTGTGTCAAAACGGTTATTTCAGGACTGCGAACAGACATGAGAGAATAC
AATCAGTGAAGACAGCACGACCCCAGGCAGTACAGTTTGGGAGTGTTGTG
CCAGCAGCCACAGTTGTGTTGTGGATATCATGGGCAGCAAAACATTTCCA
GTCAATGTGCAACGAAGTCAACCTTTCCCACGGCGAGTCAAGACTCGCAC
ATCCCATTCTCCACGTTGTAGATCCTAAGAAATCGAGCACGGGAGCGCAA
CTCACCAAATATGCGGCGTGATTGGACCATATACTATATGCTGTGTGCTG
TGTTGTGTTGTGCTGTGCTGTGCTGTGCTGTGTTGTGCTGTGCTGTGCTG
TGCTGTGCTGTGTTGTGCTGTGTTGTGTTGTGCTGTGCTGTGCTGTGTTG
TGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGGTGTGTTGTGCTGTGTTG
TGTTGTATTGTGCTGTGCTGTGCCTGTCGTCAGCAAGGTCAAGGGATTGC
TCAGGGGTCTCATTTCCACCTTCCCTTCCTTAACAAACATTACGTGGACG
AGACACTTTTATAGACACGCACACACTGTATCTAAAGAAAGGATATCATT
TTAACTTCGGAAAGTCAAAATCAACAAGTTCAAGCATAGCCCTGGAAACG
GGCCGCAGCAGAGAAAAACTTGAAAACAGTACGCTTCCTTGCGCCGCTAA
AATAAGAATGTAGCCAGAGCCTCTTCCAGTTTACCCTGAGGAGAGAGCAG
TAGATGAACTGTATGTGATTAGGCAAGCCCATCGTTTATAAATTCCTGAG
TTTGGGCCGGTGTCAACCTTCGTTTCAACCAAGTGATGGAATGCCACAGG
AAAACTCTCATTAGTTCTCCTTCCCGTCCACTGACGACAACAAAGCAATC
CTATGAATGTGCTTTTCAGACACAGCGTCACTTTCTGTCTGTATTGTTTC
AAACCGAACAATTCCAGCAATGCACATTTCCGGCATTTCTAGAGATGATT
CCCCGATGGTGGGGAGAAGCAACACTCATAGCGTGCCACGCTCGAATGTT
TCCAACTGCATCGCTCTGTTAAGAAAGCAAGGGGGCTCTCGATAAATCGG
AACAATGTAGCTACCAATACATAGTGTACAAACGTTGATACCTGTACATC
AAAATCGCATGAAACACGAGGTACACGAAGCTACGAAAACGCTTGGATAA
TAGCACAAAAACCTGACCTGGAACAACTTCACGACACAGAAAGTTAGCTC
ACTTGTGGATATTGATCTTAATACTGAGATATTGTTGATACCTCCGTGTA
CACATTGTACGCCCCCCCCCCCCCCCATACCCCCCTCTATCTCTCTACTC
CAGTACGTCAATCGTAGGGCCACAGCGGCTACAGCACCATCAAGAATTAG
AGAACGCCGATCAGTTTTCACAACGACTGGGGCATCCCTGGAGCATAATG
TAGAACCCGCAGCGGTGGCGGCCCTAAATGGCAGCGACGGCCAGGACGAC
GCCTCCTCATCCAACAATACGAAACCCAATTCCGCAGGCGGCCACGGTCG
TGGAAGGGACGGCTCATTACGTTCCTTCGATCGTACCCAGGACAGAAACA
GCGAAACGCGACAAGGAGACACTGTCATCGCCGAGACCCGTAACAAAGTA
GCCGCAACACGCATGGGTCCCGCTGCTCTTACACCTACTGTGTCATCTTC
CGTACCTACGGGGGCAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig252:10501..12669-

>mRNA_H-paniculata_contig252.6856.1 ID=mRNA_H-paniculata_contig252.6856.1|Name=mRNA_H-paniculata_contig252.6856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig252:10501..12669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTTGCAACGAGCCGTTGCGGCTCGTGGTAGAGCAGGGCGACCTGC
TGATATACAGGTTTGTCTGCGCAGCTATTTGGAGATGCTCTTGCAACGAG
CCGTTGCGGCTCGTGGTAGAGCAGGGCGACCTGCTGATATACAGGTTTGT
CTGCGCAGCTATTTGGAGTACGTCAATCGTAGGGCCACAGCGGCTACAGC
ACCATCAAGAATTAGAGAACGCCGATCAGTTTTCACAACGACTGGGGCAT
CCCTGGAGCATAATGTAGAACCCGCAGCGGTGGCGGCCCTAAATGGCAGC
GACGGCCAGGACGACGCCTCCTCATCCAACAATACGAAACCCAATTCCGC
AGGCGGCCACGGTCGTGGAAGGGACGGCTCATTACGTTCCTTCGATCGTA
CCCAGGACAGAAACAGCGAAACGCGACAAGGAGACACTGTCATCGCCGAG
ACCCGTAACAAAGTAGCCGCAACACGCATGGGTCCCGCTGCTCTTACACC
TACTGTGTCATCTTCCGTACCTACGGGGGCAGGGTACGTCAATCGTAGGG
CCACAGCGGCTACAGCACCATCAAGAATTAGAGAACGCCGATCAGTTTTC
ACAACGACTGGGGCATCCCTGGAGCATAATGTAGAACCCGCAGCGGTGGC
GGCCCTAAATGGCAGCGACGGCCAGGACGACGCCTCCTCATCCAACAATA
CGAAACCCAATTCCGCAGGCGGCCACGGTCGTGGAAGGGACGGCTCATTA
CGTTCCTTCGATCGTACCCAGGACAGAAACAGCGAAACGCGACAAGGAGA
CACTGTCATCGCCGAGACCCGTAACAAAGTAGCCGCAACACGCATGGGTC
CCGCTGCTCTTACACCTACTGTGTCATCTTCCGTACCTACGGGGGCAGGG
back to top