mRNA_H-paniculata_contig25189.6853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25189.6853.1
Unique NamemRNA_H-paniculata_contig25189.6853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: D8LC83_ECTSI (Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC83_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.770e-23
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    4 DAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKCQV 171
            DAVLH YL GP+GGQAVAEVLFG VNPSGRLP+TYPR  GNIP+PYHRP+S+ CQ 
Sbjct:  635 DAVLHAYLPGPAGGQAVAEVLFGSVNPSGRLPITYPRHSGNIPMPYHRPVSDTCQT 690
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A6H5KCT2_9PHAE (Fn3_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.140e-23
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    4 DAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKCQV 171
            DAVLH YL GP+GGQA+AEVLFG VNPSGRLP+TYPR  GNIPLPYHRP+S+ CQ 
Sbjct:  420 DAVLHAYLPGPAGGQAMAEVLFGSVNPSGRLPITYPRHAGNIPLPYHRPVSDTCQT 475
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A484DTG8_BRELC (Fn3_like domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTG8_BRELC)

HSP 1 Score: 80.1 bits (196), Expect = 4.090e-16
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 ADAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKCQ 168
            ADA+L+  L G  GGQAVAE++FG +NPSGRLP+TYP+ PG I +PY+ P++ +C+
Sbjct:  573 ADAILYAMLPGEMGGQAVAEIIFGRINPSGRLPITYPKTPGTIAIPYNHPVNTRCR 628
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A8K1CCS7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCS7_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 9.240e-15
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 ADAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKC 165
            ADAVL+  L G  GGQAVAE++FG+VNPSGRLP+TYP+ P NI +PY+  ++ +C
Sbjct:  533 ADAVLYALLPGEVGGQAVAEIIFGDVNPSGRLPITYPKDPANIAIPYNHRVTTRC 587
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A662XBP2_9STRA (Fn3_like domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBP2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-13
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    7 AVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKCQ 168
            AVL+  L G  GGQA+AE+++G VNPSGRLP+TYP+ P NI +PY+R +S +C+
Sbjct:  525 AVLYAMLPGELGGQALAEIIYGRVNPSGRLPITYPKTPANIAIPYNRLVSTQCR 578
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A8H7SIB5_9FUNG (Fn3_like domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SIB5_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-13
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    4 DAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISE 159
            DA+L  YL GP GG+A+AEVLFG+VNPSG+LP TYP+  G++ L Y RPIS+
Sbjct:  591 DAILLAYLPGPWGGKAIAEVLFGQVNPSGKLPYTYPKYAGDVNLNYWRPISD 642
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A662Y782_9STRA (Fn3_like domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y782_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.450e-13
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    4 DAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKC 165
             AVLH  L    GGQA AE+L+GEVNPSGRLPMTYP+ PG+I +PY+  +S +C
Sbjct:  194 SAVLHAGLACELGGQATAEILYGEVNPSGRLPMTYPKDPGHIMIPYNHLVSTQC 247
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A225WVN2_9STRA (Glycoside hydrolase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVN2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.530e-13
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 ADAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKCQ 168
            A AV++  L G  GGQA+AE+LFGEVNPSGRLP+TYP+ P  I +PY+ P+   C+
Sbjct:  562 AHAVVYAMLPGELGGQALAEILFGEVNPSGRLPITYPKTPAAIGIPYNHPVDTLCR 617
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BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A8H7QNP4_9FUNG (Fn3_like domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QNP4_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 1.530e-13
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 DAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISE 159
            DA+L  YL GP GGQA+AEVLFG+ NPSG+LP TYP+  G++ L Y RP+S+
Sbjct:  597 DAILLAYLPGPWGGQAIAEVLFGQTNPSGKLPYTYPKYAGDVNLNYWRPVSD 648
[Close]
BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Match: A0A2P4YNS4_9STRA (Glycoside hydrolase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNS4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.940e-13
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 ADAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRPISEKCQ 168
            A AV++  L G  GGQA+AE+LFG VNPSGRLP+TYP+ P +I +PY+ P+   C+
Sbjct:  115 AHAVVYAMLPGELGGQALAEILFGHVNPSGRLPITYPKTPASIGIPYNHPVDTLCR 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25189.6853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC83_ECTSI3.770e-2378.57Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus si... [more]
A0A6H5KCT2_9PHAE5.140e-2378.57Fn3_like domain-containing protein n=1 Tax=Ectocar... [more]
A0A484DTG8_BRELC4.090e-1657.14Fn3_like domain-containing protein n=1 Tax=Bremia ... [more]
A0A8K1CCS7_PYTOL9.240e-1560.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XBP2_9STRA1.120e-1357.41Fn3_like domain-containing protein n=2 Tax=Nothoph... [more]
A0A8H7SIB5_9FUNG1.120e-1363.46Fn3_like domain-containing protein n=1 Tax=Thamnid... [more]
A0A662Y782_9STRA1.450e-1361.11Fn3_like domain-containing protein n=1 Tax=Nothoph... [more]
A0A225WVN2_9STRA1.530e-1357.14Glycoside hydrolase n=1 Tax=Phytophthora megakarya... [more]
A0A8H7QNP4_9FUNG1.530e-1361.54Fn3_like domain-containing protein n=1 Tax=Mucor s... [more]
A0A2P4YNS4_9STRA1.940e-1355.36Glycoside hydrolase n=1 Tax=Phytophthora palmivora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25189contigH-paniculata_contig25189:3193..3372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue6.2e-19
Seed eggNOG ortholog2880.D8LC83
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K05349
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000272,GO:0000323,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005886,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0008422,GO:0009056,GO:0009057,GO:0009251,GO:0015926,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.xylan 1,4-beta-xylosidase activity
EggNOG OGs2QQ55@2759,COG1472@1
EC3.2.1.21
COG Functional cat.G
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.9763033-CDS-H-paniculata_contig25189:3192..33721622929740.9763033-CDS-H-paniculata_contig25189:3192..3372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25189 3193..3372 +
1691480991.1273763-CDS-H-paniculata_contig25189:3192..33721691480991.1273763-CDS-H-paniculata_contig25189:3192..3372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25189 3193..3372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25189.6853.1prot_H-paniculata_contig25189.6853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25189 3193..3372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25189.6853.1

>prot_H-paniculata_contig25189.6853.1 ID=prot_H-paniculata_contig25189.6853.1|Name=mRNA_H-paniculata_contig25189.6853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
ADAVLHTYLLGPSGGQAVAEVLFGEVNPSGRLPMTYPRVPGNIPLPYHRP
ISEKCQVCK*
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mRNA from alignment at H-paniculata_contig25189:3193..3372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25189.6853.1 ID=mRNA_H-paniculata_contig25189.6853.1|Name=mRNA_H-paniculata_contig25189.6853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig25189:3193..3372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGATGCAGTGTTACACACGTATCTGTTGGGGCCCTCGGGGGGACAGGC
GGTAGCGGAGGTGCTGTTTGGCGAGGTCAATCCCTCGGGCAGGCTGCCCA
TGACGTATCCGCGGGTGCCTGGAAATATACCGCTGCCGTACCATCGACCT
ATCAGCGAGAAATGTCAGGTGTGTAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25189:3193..3372+

>mRNA_H-paniculata_contig25189.6853.1 ID=mRNA_H-paniculata_contig25189.6853.1|Name=mRNA_H-paniculata_contig25189.6853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig25189:3193..3372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGATGCAGTGTTACACACGTATCTGTTGGGGCCCTCGGGGGGACAGGC
GGTAGCGGAGGTGCTGTTTGGCGAGGTCAATCCCTCGGGCAGGCTGCCCA
TGACGTATCCGCGGGTGCCTGGAAATATACCGCTGCCGTACCATCGACCT
ATCAGCGAGAAATGTCAGGTGTGTAAATAGGCGGATGCAGTGTTACACAC
GTATCTGTTGGGGCCCTCGGGGGGACAGGCGGTAGCGGAGGTGCTGTTTG
GCGAGGTCAATCCCTCGGGCAGGCTGCCCATGACGTATCCGCGGGTGCCT
GGAAATATACCGCTGCCGTACCATCGACCTATCAGCGAGAAATGTCAGGT
GTGTAAATAG
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